mRNA_E-siliculosus-1a_M_contig98.17685.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig98.17685.1
Unique NamemRNA_E-siliculosus-1a_M_contig98.17685.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17685.1 vs. uniprot
Match: D7FZP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZP1_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 4.220e-8
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 LWDVGNDTLRNEDVSGLWKLTVLTSLVGWSPWV 99
            LWDVGNDTLRNEDVSGLWKLTVLTSL+   P V
Sbjct:  468 LWDVGNDTLRNEDVSGLWKLTVLTSLISPVPLV 500
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZP1_ECTSI4.220e-884.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig98contigE-siliculosus-1a_M_contig98:40617..41003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size342
Model size389
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs29S8M@1,2RXD7@2759
EggNOG free text desc.BT1 family
Seed eggNOG ortholog2880.D7FZP1
Seed ortholog evalue4.6e-07
Seed ortholog score60.8
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936556.3986516-CDS-E-siliculosus-1a_M_contig98:40616..409581622936556.3986516-CDS-E-siliculosus-1a_M_contig98:40616..40958Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 40617..40958 +
1696251129.4430394-CDS-E-siliculosus-1a_M_contig98:40616..409581696251129.4430394-CDS-E-siliculosus-1a_M_contig98:40616..40958Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 40617..40958 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936556.466745-UTR-E-siliculosus-1a_M_contig98:40958..410031622936556.466745-UTR-E-siliculosus-1a_M_contig98:40958..41003Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 40959..41003 +
1696251129.4528077-UTR-E-siliculosus-1a_M_contig98:40958..410031696251129.4528077-UTR-E-siliculosus-1a_M_contig98:40958..41003Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 40959..41003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig98.17685.1prot_E-siliculosus-1a_M_contig98.17685.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig98 40617..40958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig98.17685.1

>prot_E-siliculosus-1a_M_contig98.17685.1 ID=prot_E-siliculosus-1a_M_contig98.17685.1|Name=mRNA_E-siliculosus-1a_M_contig98.17685.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=114bp
LWDVGNDTLRNEDVSGLWKLTVLTSLVGWSPWVGIADGGLVFVFVLASSF
FSECTENRFGVCVVSLPPSLVVGCNGSNFGVFEVARLSPTPENQHQDLGV
LHLPRDTPLNRTM*
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mRNA from alignment at E-siliculosus-1a_M_contig98:40617..41003+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig98.17685.1 ID=mRNA_E-siliculosus-1a_M_contig98.17685.1|Name=mRNA_E-siliculosus-1a_M_contig98.17685.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=387bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:40617..41003+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTGTGGGACGTTGGGAACGACACGCTGCGAAATGAAGACGTGTCCGGGCT
GTGGAAACTCACGGTGCTCACTAGCTTGGTGGGTTGGTCTCCGTGGGTGG
GGATAGCGGATGGAGGTCTCGTTTTTGTCTTCGTTCTGGCTTCGAGTTTT
TTCTCCGAGTGCACAGAGAATCGTTTCGGCGTATGCGTTGTCTCCCTGCC
CCCCTCTCTTGTCGTTGGGTGCAATGGTTCCAATTTTGGTGTGTTTGAAG
TTGCTCGCTTGTCCCCAACGCCCGAAAACCAACATCAAGACCTCGGCGTG
CTTCACCTACCCCGCGACACCCCTCTCAATCGTACTATGTAGTTGAGTGT
GCGAACGTATGTATCACCTGCGTCTGCTGTCTCCTCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:40617..41003+

>mRNA_E-siliculosus-1a_M_contig98.17685.1 ID=mRNA_E-siliculosus-1a_M_contig98.17685.1|Name=mRNA_E-siliculosus-1a_M_contig98.17685.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=684bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:40617..41003+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CTGTGGGACGTTGGGAACGACACGCTGCGAAATGAAGACGTGTCCGGGCT
GTGGAAACTCACGGTGCTCACTAGCTTGGTGGGTTGGTCTCCGTGGGTGG
GGATAGCGGATGGAGGTCTCGTTTTTGTCTTCGTTCTGGCTTCGAGTTTT
TTCTCCGAGTGCACAGAGAATCGTTTCGGCGTATGCGTTGTCTCCCTGCC
CCCCTCTCTTGTCGTTGGGTGCAATGGTTCCAATTTTGGTGTGTTTGAAG
TTGCTCGCTTGTCCCCAACGCCCGAAAACCAACATCAAGACCTCGGCGTG
CTTCACCTACCCCGCGACACCCCTCTCAATCGTACTATGTAGCTGTGGGA
CGTTGGGAACGACACGCTGCGAAATGAAGACGTGTCCGGGCTGTGGAAAC
TCACGGTGCTCACTAGCTTGGTGGGTTGGTCTCCGTGGGTGGGGATAGCG
GATGGAGGTCTCGTTTTTGTCTTCGTTCTGGCTTCGAGTTTTTTCTCCGA
GTGCACAGAGAATCGTTTCGGCGTATGCGTTGTCTCCCTGCCCCCCTCTC
TTGTCGTTGGGTGCAATGGTTCCAATTTTGGTGTGTTTGAAGTTGCTCGC
TTGTCCCCAACGCCCGAAAACCAACATCAAGACCTCGGCGTGCTTCACCT
ACCCCGCGACACCCCTCTCAATCGTACTATGTAG
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