prot_E-siliculosus-1a_M_contig96.17620.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17620.1
Unique Nameprot_E-siliculosus-1a_M_contig96.17620.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length115
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17620.1 vs. uniprot
Match: Q6XM58_9PHYC (FirrV-1-A29 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM58_9PHYC)

HSP 1 Score: 95.9 bits (237), Expect = 2.880e-23
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 0 
Query:    9 FAMCRDLCSRSQHSRFHHGAVTVLRRGHRVLGKGSNRHNAHAEVSSIKAIPQYQRHDNLVVYVCRVNSSGRFMNSRPCLNCLTFMKANHVTRVFFTDGLG-FTKINL 114
            F  C+ L   SQH  F HGA+   R    ++GKGSNR + HAEVS+++ + Q  +H  L VYVCRVN+ G+FMNS+PC NC+ +MK   V RV+++D  G F+K+ L
Sbjct:    9 FLECQHLAKFSQHPVFRHGALVTNRTT--IVGKGSNRSSLHAEVSALQNV-QGGQHMRLRVYVCRVNARGKFMNSKPCQNCMNYMKHRGVYRVYYSDDAGGFSKLVL 112
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17620.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q6XM58_9PHYC2.880e-2347.66FirrV-1-A29 n=1 Tax=Feldmannia irregularis virus a... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.140.10coord: 1..112
e-value: 2.5E-10
score: 42.2
IPR002125Cytidine and deoxycytidylate deaminase domainPFAMPF00383dCMP_cyt_deam_1coord: 3..103
e-value: 2.6E-8
score: 33.7
IPR016193Cytidine deaminase-likeSUPERFAMILY53927Cytidine deaminase-likecoord: 5..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:567541..567885 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17620.1mRNA_E-siliculosus-1a_M_contig96.17620.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig96 567541..567885 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig96.17620.1 ID=prot_E-siliculosus-1a_M_contig96.17620.1|Name=mRNA_E-siliculosus-1a_M_contig96.17620.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=115bp
MKRQHTDYFAMCRDLCSRSQHSRFHHGAVTVLRRGHRVLGKGSNRHNAHA
EVSSIKAIPQYQRHDNLVVYVCRVNSSGRFMNSRPCLNCLTFMKANHVTR
VFFTDGLGFTKINL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016193Cytidine_deaminase-like
IPR002125CMP_dCMP_dom