mRNA_E-siliculosus-1a_M_contig96.17620.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17620.1 vs. uniprot
Match: Q6XM58_9PHYC (FirrV-1-A29 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM58_9PHYC) HSP 1 Score: 95.9 bits (237), Expect = 2.880e-23 Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 1 Query: 25 FAMCRDLCSRSQHSRFHHGAVTVLRRGHRVLGKGSNRHNAHAEVSSIKAIPQYQRHDNLVVYVCRVNSSGRFMNSRPCLNCLTFMKANHVTRVFFTDGLG-FTKINL 342
F C+ L SQH F HGA+ R ++GKGSNR + HAEVS+++ + Q +H L VYVCRVN+ G+FMNS+PC NC+ +MK V RV+++D G F+K+ L
Sbjct: 9 FLECQHLAKFSQHPVFRHGALVTNRTT--IVGKGSNRSSLHAEVSALQNV-QGGQHMRLRVYVCRVNARGKFMNSKPCQNCMNYMKHRGVYRVYYSDDAGGFSKLVL 112 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17620.1 >prot_E-siliculosus-1a_M_contig96.17620.1 ID=prot_E-siliculosus-1a_M_contig96.17620.1|Name=mRNA_E-siliculosus-1a_M_contig96.17620.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=115bp MKRQHTDYFAMCRDLCSRSQHSRFHHGAVTVLRRGHRVLGKGSNRHNAHAback to top mRNA from alignment at E-siliculosus-1a_M_contig96:567541..567885- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig96.17620.1 ID=mRNA_E-siliculosus-1a_M_contig96.17620.1|Name=mRNA_E-siliculosus-1a_M_contig96.17620.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=345bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:567541..567885- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:567541..567885- >mRNA_E-siliculosus-1a_M_contig96.17620.1 ID=mRNA_E-siliculosus-1a_M_contig96.17620.1|Name=mRNA_E-siliculosus-1a_M_contig96.17620.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=690bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:567541..567885- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |