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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA) HSP 1 Score: 198 bits (504), Expect = 8.170e-64 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 Query: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: H4_SOLLC (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC) HSP 1 Score: 198 bits (503), Expect = 1.160e-63 Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 Query: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA) HSP 1 Score: 198 bits (504), Expect = 1.660e-63 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 Query: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 23 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: B7FX68_PHATC (Histone H4 n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FX68_PHATC) HSP 1 Score: 197 bits (501), Expect = 2.340e-63 Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 Query: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQG+TLYGFGG
Sbjct: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 103
BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: C1MUM2_MICPC (Histone H4 n=20 Tax=Eukaryota TaxID=2759 RepID=C1MUM2_MICPC) HSP 1 Score: 197 bits (501), Expect = 2.340e-63 Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 Query: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: A0A067CU13_SAPPC (Histone H4 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CU13_SAPPC) HSP 1 Score: 197 bits (501), Expect = 2.340e-63 Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 Query: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVI+DSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIKDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: F0W2L9_9STRA (Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID=F0W2L9_9STRA) HSP 1 Score: 197 bits (501), Expect = 2.340e-63 Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 Query: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
M+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: A0A7S3RVL2_9SPIT (Histone H4 (Fragment) n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3RVL2_9SPIT) HSP 1 Score: 197 bits (501), Expect = 2.420e-63 Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 Query: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: UPI0007EE9419 (LOW QUALITY PROTEIN: histone H4 n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=UPI0007EE9419) HSP 1 Score: 197 bits (502), Expect = 2.750e-63 Identity = 103/111 (92.79%), Postives = 106/111 (95.50%), Query Frame = 1 Query: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*SSSSSCP 333
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG +S P
Sbjct: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGGXRPASQLP 111
BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: H4_ARATH (Histone H4 n=272 Tax=Eukaryota TaxID=2759 RepID=H4_ARATH) HSP 1 Score: 197 bits (500), Expect = 3.330e-63 Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 1 Query: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 312 |
| Model size | 401 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
| BRITE | ko00000,ko00001,ko03036 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | B |
| EggNOG OGs | COG2036@1,KOG3467@2759 |
| EggNOG free text desc. | protein heterodimerization activity |
| GOs | GO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363 |
| KEGG Pathway | ko05034,ko05203,ko05322,map05034,map05203,map05322 |
| KEGG ko | ko:K11254 |
| Seed eggNOG ortholog | 157072.XP_008863623.1 |
| Seed ortholog evalue | 1.3e-48 |
| Seed ortholog score | 198.7 |
| Taxonomic scope | Eukaryota |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936536.136655-CDS-E-siliculosus-1a_M_contig96:419921..420233 | 1622936536.136655-CDS-E-siliculosus-1a_M_contig96:419921..420233 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 419922..420233 + |
| 1696251121.6055312-CDS-E-siliculosus-1a_M_contig96:419921..420233 | 1696251121.6055312-CDS-E-siliculosus-1a_M_contig96:419921..420233 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig96 419922..420233 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936536.1534479-UTR-E-siliculosus-1a_M_contig96:420233..420322 | 1622936536.1534479-UTR-E-siliculosus-1a_M_contig96:420233..420322 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 420234..420322 + |
| 1696251121.6206934-UTR-E-siliculosus-1a_M_contig96:420233..420322 | 1696251121.6206934-UTR-E-siliculosus-1a_M_contig96:420233..420322 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig96 420234..420322 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig96.17597.1 >prot_E-siliculosus-1a_M_contig96.17597.1 ID=prot_E-siliculosus-1a_M_contig96.17597.1|Name=mRNA_E-siliculosus-1a_M_contig96.17597.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG* back to topmRNA from alignment at E-siliculosus-1a_M_contig96:419922..420322+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig96.17597.1 ID=mRNA_E-siliculosus-1a_M_contig96.17597.1|Name=mRNA_E-siliculosus-1a_M_contig96.17597.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=401bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:419922..420322+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAAGGGTGGCGCCAA
GCGCCACCGCAAGGTACTCCGCGACAACATCCAGGGCATCACCAAGCCCG
CCATCCGCCGCCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCGGGACTC
ATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTCGAGAACGTCAT
CCGTGACTCGGTGACCTACACCGAGCACGCCCGCCGGAAGACGGTGACGG
CCATGGACGTGGTGTACGCTCTCAAGCGCCAGGGCCGCACCCTCTACGGT
TTCGGCGGCTAAAGCTCATCATCATCCTGCCCTGCTTGAACAAGGCAAGA
GGCTAAACGCTCTCACCCTCCCTGGCCGAGAAGCTCCCCTCACAAACCAA
C back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:419922..420322+ >mRNA_E-siliculosus-1a_M_contig96.17597.1 ID=mRNA_E-siliculosus-1a_M_contig96.17597.1|Name=mRNA_E-siliculosus-1a_M_contig96.17597.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=624bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:419922..420322+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAAGGGTGGCGCCAA
GCGCCACCGCAAGGTACTCCGCGACAACATCCAGGGCATCACCAAGCCCG
CCATCCGCCGCCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCGGGACTC
ATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTCGAGAACGTCAT
CCGTGACTCGGTGACCTACACCGAGCACGCCCGCCGGAAGACGGTGACGG
CCATGGACGTGGTGTACGCTCTCAAGCGCCAGGGCCGCACCCTCTACGGT
TTCGGCGGCTAAATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAA
GGGTGGCGCCAAGCGCCACCGCAAGGTACTCCGCGACAACATCCAGGGCA
TCACCAAGCCCGCCATCCGCCGCCTGGCTCGCCGTGGCGGTGTGAAGCGT
ATCTCGGGACTCATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCT
CGAGAACGTCATCCGTGACTCGGTGACCTACACCGAGCACGCCCGCCGGA
AGACGGTGACGGCCATGGACGTGGTGTACGCTCTCAAGCGCCAGGGCCGC
ACCCTCTACGGTTTCGGCGGCTAA back to top
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