mRNA_E-siliculosus-1a_M_contig96.17597.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig96.17597.1
Unique NamemRNA_E-siliculosus-1a_M_contig96.17597.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 198 bits (504), Expect = 8.170e-64
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: H4_SOLLC (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC)

HSP 1 Score: 198 bits (503), Expect = 1.160e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.660e-63
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   23 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: B7FX68_PHATC (Histone H4 n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FX68_PHATC)

HSP 1 Score: 197 bits (501), Expect = 2.340e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQG+TLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 103
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: C1MUM2_MICPC (Histone H4 n=20 Tax=Eukaryota TaxID=2759 RepID=C1MUM2_MICPC)

HSP 1 Score: 197 bits (501), Expect = 2.340e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: A0A067CU13_SAPPC (Histone H4 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CU13_SAPPC)

HSP 1 Score: 197 bits (501), Expect = 2.340e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVI+DSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIKDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: F0W2L9_9STRA (Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID=F0W2L9_9STRA)

HSP 1 Score: 197 bits (501), Expect = 2.340e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            M+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: A0A7S3RVL2_9SPIT (Histone H4 (Fragment) n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3RVL2_9SPIT)

HSP 1 Score: 197 bits (501), Expect = 2.420e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: UPI0007EE9419 (LOW QUALITY PROTEIN: histone H4 n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=UPI0007EE9419)

HSP 1 Score: 197 bits (502), Expect = 2.750e-63
Identity = 103/111 (92.79%), Postives = 106/111 (95.50%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*SSSSSCP 333
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG   +S  P
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGGXRPASQLP 111
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: H4_ARATH (Histone H4 n=272 Tax=Eukaryota TaxID=2759 RepID=H4_ARATH)

HSP 1 Score: 197 bits (500), Expect = 3.330e-63
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A024G0M5_9STRA8.170e-64100.00Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI... [more]
H4_SOLLC1.160e-6399.03Histone H4 n=13 Tax=cellular organisms TaxID=13156... [more]
A0A3L6V663_9STRA1.660e-63100.00Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]
B7FX68_PHATC2.340e-6399.03Histone H4 n=13 Tax=Bacillariophyta TaxID=2836 Rep... [more]
C1MUM2_MICPC2.340e-6399.03Histone H4 n=20 Tax=Eukaryota TaxID=2759 RepID=C1M... [more]
A0A067CU13_SAPPC2.340e-6399.03Histone H4 n=5 Tax=Saprolegniaceae TaxID=4764 RepI... [more]
F0W2L9_9STRA2.340e-6399.03Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A7S3RVL2_9SPIT2.420e-6399.03Histone H4 (Fragment) n=2 Tax=Sar TaxID=2698737 Re... [more]
UPI0007EE94192.750e-6392.79LOW QUALITY PROTEIN: histone H4 n=1 Tax=Oryctolagu... [more]
H4_ARATH3.330e-6398.06Histone H4 n=272 Tax=Eukaryota TaxID=2759 RepID=H4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig96contigE-siliculosus-1a_M_contig96:419922..420322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size312
Model size401
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.B
EggNOG OGsCOG2036@1,KOG3467@2759
EggNOG free text desc.protein heterodimerization activity
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
KEGG koko:K11254
Seed eggNOG ortholog157072.XP_008863623.1
Seed ortholog evalue1.3e-48
Seed ortholog score198.7
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936536.136655-CDS-E-siliculosus-1a_M_contig96:419921..4202331622936536.136655-CDS-E-siliculosus-1a_M_contig96:419921..420233Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 419922..420233 +
1696251121.6055312-CDS-E-siliculosus-1a_M_contig96:419921..4202331696251121.6055312-CDS-E-siliculosus-1a_M_contig96:419921..420233Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig96 419922..420233 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936536.1534479-UTR-E-siliculosus-1a_M_contig96:420233..4203221622936536.1534479-UTR-E-siliculosus-1a_M_contig96:420233..420322Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 420234..420322 +
1696251121.6206934-UTR-E-siliculosus-1a_M_contig96:420233..4203221696251121.6206934-UTR-E-siliculosus-1a_M_contig96:420233..420322Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig96 420234..420322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig96.17597.1prot_E-siliculosus-1a_M_contig96.17597.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig96 419922..420233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig96.17597.1

>prot_E-siliculosus-1a_M_contig96.17597.1 ID=prot_E-siliculosus-1a_M_contig96.17597.1|Name=mRNA_E-siliculosus-1a_M_contig96.17597.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*
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mRNA from alignment at E-siliculosus-1a_M_contig96:419922..420322+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig96.17597.1 ID=mRNA_E-siliculosus-1a_M_contig96.17597.1|Name=mRNA_E-siliculosus-1a_M_contig96.17597.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=401bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:419922..420322+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAAGGGTGGCGCCAA
GCGCCACCGCAAGGTACTCCGCGACAACATCCAGGGCATCACCAAGCCCG
CCATCCGCCGCCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCGGGACTC
ATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTCGAGAACGTCAT
CCGTGACTCGGTGACCTACACCGAGCACGCCCGCCGGAAGACGGTGACGG
CCATGGACGTGGTGTACGCTCTCAAGCGCCAGGGCCGCACCCTCTACGGT
TTCGGCGGCTAAAGCTCATCATCATCCTGCCCTGCTTGAACAAGGCAAGA
GGCTAAACGCTCTCACCCTCCCTGGCCGAGAAGCTCCCCTCACAAACCAA
C
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig96:419922..420322+

>mRNA_E-siliculosus-1a_M_contig96.17597.1 ID=mRNA_E-siliculosus-1a_M_contig96.17597.1|Name=mRNA_E-siliculosus-1a_M_contig96.17597.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=624bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig96:419922..420322+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAAGGGTGGCGCCAA
GCGCCACCGCAAGGTACTCCGCGACAACATCCAGGGCATCACCAAGCCCG
CCATCCGCCGCCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCGGGACTC
ATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTCGAGAACGTCAT
CCGTGACTCGGTGACCTACACCGAGCACGCCCGCCGGAAGACGGTGACGG
CCATGGACGTGGTGTACGCTCTCAAGCGCCAGGGCCGCACCCTCTACGGT
TTCGGCGGCTAAATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAA
GGGTGGCGCCAAGCGCCACCGCAAGGTACTCCGCGACAACATCCAGGGCA
TCACCAAGCCCGCCATCCGCCGCCTGGCTCGCCGTGGCGGTGTGAAGCGT
ATCTCGGGACTCATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCT
CGAGAACGTCATCCGTGACTCGGTGACCTACACCGAGCACGCCCGCCGGA
AGACGGTGACGGCCATGGACGTGGTGTACGCTCTCAAGCGCCAGGGCCGC
ACCCTCTACGGTTTCGGCGGCTAA
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