mRNA_E-siliculosus-1a_M_contig96.17597.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 198 bits (504), Expect = 8.170e-64
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

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BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: H4_SOLLC (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC)

HSP 1 Score: 198 bits (503), Expect = 1.160e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

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BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.660e-63
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   23 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125

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BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: B7FX68_PHATC (Histone H4 n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FX68_PHATC)

HSP 1 Score: 197 bits (501), Expect = 2.340e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQG+TLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 103

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BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: C1MUM2_MICPC (Histone H4 n=20 Tax=Eukaryota TaxID=2759 RepID=C1MUM2_MICPC)

HSP 1 Score: 197 bits (501), Expect = 2.340e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

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BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: A0A067CU13_SAPPC (Histone H4 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CU13_SAPPC)

HSP 1 Score: 197 bits (501), Expect = 2.340e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVI+DSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIKDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

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BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: F0W2L9_9STRA (Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID=F0W2L9_9STRA)

HSP 1 Score: 197 bits (501), Expect = 2.340e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            M+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

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BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: A0A7S3RVL2_9SPIT (Histone H4 (Fragment) n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3RVL2_9SPIT)

HSP 1 Score: 197 bits (501), Expect = 2.420e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

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BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: UPI0007EE9419 (LOW QUALITY PROTEIN: histone H4 n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=UPI0007EE9419)

HSP 1 Score: 197 bits (502), Expect = 2.750e-63
Identity = 103/111 (92.79%), Postives = 106/111 (95.50%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*SSSSSCP 333
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG   +S  P
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGGXRPASQLP 111

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BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Match: H4_ARATH (Histone H4 n=272 Tax=Eukaryota TaxID=2759 RepID=H4_ARATH)

HSP 1 Score: 197 bits (500), Expect = 3.330e-63
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 1

Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig96.17597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
A0A024G0M5_9STRA	8.170e-64	100.00	Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI...	[more]
H4_SOLLC	1.160e-63	99.03	Histone H4 n=13 Tax=cellular organisms TaxID=13156...	[more]
A0A3L6V663_9STRA	1.660e-63	100.00	Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID...	[more]
B7FX68_PHATC	2.340e-63	99.03	Histone H4 n=13 Tax=Bacillariophyta TaxID=2836 Rep...	[more]
C1MUM2_MICPC	2.340e-63	99.03	Histone H4 n=20 Tax=Eukaryota TaxID=2759 RepID=C1M...	[more]
A0A067CU13_SAPPC	2.340e-63	99.03	Histone H4 n=5 Tax=Saprolegniaceae TaxID=4764 RepI...	[more]
F0W2L9_9STRA	2.340e-63	99.03	Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID...	[more]
A0A7S3RVL2_9SPIT	2.420e-63	99.03	Histone H4 (Fragment) n=2 Tax=Sar TaxID=2698737 Re...	[more]
UPI0007EE9419	2.750e-63	92.79	LOW QUALITY PROTEIN: histone H4 n=1 Tax=Oryctolagu...	[more]
H4_ARATH	3.330e-63	98.06	Histone H4 n=272 Tax=Eukaryota TaxID=2759 RepID=H4...	[more]

Pages

Properties


Property Name	Value
Start	1
Stop	1
Cds size	312
Model size	401
Exons	1
Hectar predicted targeting category	other localisation
BRITE	ko00000,ko00001,ko03036
Best eggNOG OG	NA\|NA\|NA
Best tax level	Eukaryota
COG Functional cat.	B
EggNOG OGs	COG2036@1,KOG3467@2759
EggNOG free text desc.	protein heterodimerization activity
GOs	GO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
KEGG Pathway	ko05034,ko05203,ko05322,map05034,map05203,map05322
KEGG ko	ko:K11254
Seed eggNOG ortholog	157072.XP_008863623.1
Seed ortholog evalue	1.3e-48
Seed ortholog score	198.7
Taxonomic scope	Eukaryota