prot_E-siliculosus-1a_M_contig94.17413.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_M_contig94.17413.1
Unique Name	prot_E-siliculosus-1a_M_contig94.17413.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length	1001

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig94.17413.1 vs. uniprot
Match: D7FIP9_ECTSI (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP9_ECTSI)

HSP 1 Score: 495 bits (1274), Expect = 8.990e-165
Identity = 286/297 (96.30%), Postives = 287/297 (96.63%), Query Frame = 0

Query:  704 VPKGVGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGVPTKFLSILYDMLVEGNPQVWWERETGSVVIEDPQLFEAETMPLFFADPKVSGFLRQLAFYGFKKPGRSVKEQGRYQHPECRWKDVSCVKSLLTKKAYDLRRLEKAIRNTSAVTGPDRSPCGDGGRTGSVGAVGQGEEGDAAEVERTELEVAAEATVVRGKSVGRQVRKELRQMMSRSQLGCWQVEQTAKLMMKIMRLNAKLAEGLRQCRARGGPPVLCRYNMNSPALAKVRVENARLRRRVRRLEDEAERRGLPLTAR 1000
            VPKGVGTG  XXXXXXXXXXXXXXXXXXXXXXXXX   VPTKFLSILYDMLVEGNPQVWWERETGSVVIEDPQLFEAETMP FF DPKVSGFLRQLAFYGFKKPGRSVKEQGRYQHPECRWKDVSCVKSLLTKKAYDLRRLEKAIRNTSAV GPD SPCGDGGRTGSVGAVGQGEEGDAAEVERTELEVAAEATVVRGKSVGRQVRKELRQMMSRSQLGCWQVEQTAKLMMKIMRLNAKLAEGLRQCRARGGPPVL RYNMNSPALAKVR+ENARLRRRVRRLEDEAERRGLPLTAR
Sbjct:   28 VPKGVGTGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPTKFLSILYDMLVEGNPQVWWERETGSVVIEDPQLFEAETMPRFFTDPKVSGFLRQLAFYGFKKPGRSVKEQGRYQHPECRWKDVSCVKSLLTKKAYDLRRLEKAIRNTSAVAGPDGSPCGDGGRTGSVGAVGQGEEGDAAEVERTELEVAAEATVVRGKSVGRQVRKELRQMMSRSQLGCWQVEQTAKLMMKIMRLNAKLAEGLRQCRARGGPPVLRRYNMNSPALAKVRLENARLRRRVRRLEDEAERRGLPLTAR 324

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig94.17413.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig94.17413.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1

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POSITION

0


Match Name	E-value	Identity	Description
D7FIP9_ECTSI	8.990e-165	96.30	HSF_DOMAIN domain-containing protein n=2 Tax=Ectoc...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29

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x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 969..989
None	No IPR available	PANTHER	PTHR14445	GRB10 INTERACTING GYF PROTEIN	coord: 108..367
None	No IPR available	PANTHER	PTHR14445:SF41		coord: 108..367
IPR000232	Heat shock factor (HSF)-type, DNA-binding	SMART	SM00415	hsfneu3	coord: 742..918 e-value: 0.0011 score: 5.3
IPR000232	Heat shock factor (HSF)-type, DNA-binding	PFAM	PF00447	HSF_DNA-bind	coord: 746..821 e-value: 4.0E-12 score: 46.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 739..836 e-value: 8.9E-12 score: 47.1
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 744..810

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig94	contig	E-siliculosus-1a_M_contig94:186652..193282 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig94.17413.1	mRNA_E-siliculosus-1a_M_contig94.17413.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	mRNA	E-siliculosus-1a_M_contig94 186010..194480 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_M_contig94.17413.1 ID=prot_E-siliculosus-1a_M_contig94.17413.1|Name=mRNA_E-siliculosus-1a_M_contig94.17413.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1001bp
MTNEGVGSTQLSSFTNPEVRQQSSSLALLGPPPPEFHPEQQQQQQQQQQH
FQYPGSLGQQQQHQHQRQLPESQALPSLRSSINFSGTRSRDHHHQRHHHQ
HIGPNNPAAAQQQPQRSPGRTGGIPVPAVGALPQRQSPQLRPLSFPQSSG
GSGSSSGSPGALSPSGLGGAAGFYSRGGERGTGTHQRLARTLPSPFSGGG
SRGVDGLDIGPSSTQQQQQQQQQQQQFSVAALPNAAWPPSLLPGYRTMSM
PPSQAQDSAPPLRQPQSPAVAVAGGGWGVASPPAGMAARRGGGSEGDRAA
CPSSGMGGTSTRPASPGSWVAPQAQRSGSGGSGGGVAGDSSAMGGTGSGQ
IKTRVVQQQQQQQQPQAPFARVAGGSGESYGGGGLPQPLLPQVAHHSPRA
QQQQQQWGMGATTNVLARSVTAGGPWPVNRSHGGGGGGGGGGGGTARTDL
QQTPTYGWSSQDSSSRLPQQSPDVGAMMARAIGGGAQRQQKAGMNLVGGG
ATVGPAALRGGGVFAGAGAAASSSGPVSLLSAPVGDFVKQPHRVGKRPQQ
QQQQQQRGRGLVLAPRQELAGQQGPPSAAAAAAVAAINAAAMGDAASREW
SALRTTIPFYQGMLKIPQQGQQPKMLPQQQQQQQQQQQQQQQQQQPQQPQ
QHVAAPASPPLPVTVSPLTSPRFTPIAPMIPKQQPAAMPPPTPPPPPPPP
TPAVPKGVGTGGKGEGGKAGGAATGGNGGGGGAGRGPGRRGVPTKFLSIL
YDMLVEGNPQVWWERETGSVVIEDPQLFEAETMPLFFADPKVSGFLRQLA
FYGFKKPGRSVKEQGRYQHPECRWKDVSCVKSLLTKKAYDLRRLEKAIRN
TSAVTGPDRSPCGDGGRTGSVGAVGQGEEGDAAEVERTELEVAAEATVVR
GKSVGRQVRKELRQMMSRSQLGCWQVEQTAKLMMKIMRLNAKLAEGLRQC
RARGGPPVLCRYNMNSPALAKVRVENARLRRRVRRLEDEAERRGLPLTAR
*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036390	WH_DNA-bd_sf
IPR036388	WH-like_DNA-bd_sf
IPR000232	HSF_DNA-bd