mRNA_E-siliculosus-1a_M_contig94.17413.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig94.17413.1 vs. uniprot
Match: D7FIP9_ECTSI (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP9_ECTSI) HSP 1 Score: 496 bits (1277), Expect = 2.580e-162 Identity = 286/297 (96.30%), Postives = 287/297 (96.63%), Query Frame = 2 Query: 2294 VPKGVGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGVPTKFLSILYDMLVEGNPQVWWERETGSVVIEDPQLFEAETMPLFFADPKVSGFLRQLAFYGFKKPGRSVKEQGRYQHPECRWKDVSCVKSLLTKKAYDLRRLEKAIRNTSAVTGPDRSPCGDGGRTGSVGAVGQGEEGDAAEVERTELEVAAEATVVRGKSVGRQVRKELRQMMSRSQLGCWQVEQTAKLMMKIMRLNAKLAEGLRQCRARGGPPVLCRYNMNSPALAKVRVENARLRRRVRRLEDEAERRGLPLTAR 3184
VPKGVGTG XXXXXXXXXXXXXXXXXXXXXXXXX VPTKFLSILYDMLVEGNPQVWWERETGSVVIEDPQLFEAETMP FF DPKVSGFLRQLAFYGFKKPGRSVKEQGRYQHPECRWKDVSCVKSLLTKKAYDLRRLEKAIRNTSAV GPD SPCGDGGRTGSVGAVGQGEEGDAAEVERTELEVAAEATVVRGKSVGRQVRKELRQMMSRSQLGCWQVEQTAKLMMKIMRLNAKLAEGLRQCRARGGPPVL RYNMNSPALAKVR+ENARLRRRVRRLEDEAERRGLPLTAR
Sbjct: 28 VPKGVGTGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPTKFLSILYDMLVEGNPQVWWERETGSVVIEDPQLFEAETMPRFFTDPKVSGFLRQLAFYGFKKPGRSVKEQGRYQHPECRWKDVSCVKSLLTKKAYDLRRLEKAIRNTSAVAGPDGSPCGDGGRTGSVGAVGQGEEGDAAEVERTELEVAAEATVVRGKSVGRQVRKELRQMMSRSQLGCWQVEQTAKLMMKIMRLNAKLAEGLRQCRARGGPPVLRRYNMNSPALAKVRLENARLRRRVRRLEDEAERRGLPLTAR 324
BLAST of mRNA_E-siliculosus-1a_M_contig94.17413.1 vs. uniprot
Match: A0A6H5JH37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH37_9PHAE) HSP 1 Score: 145 bits (367), Expect = 2.440e-37 Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 3 Query: 546 QAGYRCPRLEHSRNDSLRSCAPFLSHKAAAAAEAAAEARERCPRAAWEVQRGSTAGAARGVPGPTNGSRAPFRRRSLEGVRGVSMA 803
+ GYRCPRLEHSRN SLRSCAPFLSHKAAAAAEAAAEARE CP+AAWEV+RGSTAGAARGVPGPT+GSRA FRRR LE VRGVSMA
Sbjct: 18 EVGYRCPRLEHSRNVSLRSCAPFLSHKAAAAAEAAAEAREGCPQAAWEVRRGSTAGAARGVPGPTSGSRARFRRRFLEVVRGVSMA 103 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig94.17413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig94.17413.1 >prot_E-siliculosus-1a_M_contig94.17413.1 ID=prot_E-siliculosus-1a_M_contig94.17413.1|Name=mRNA_E-siliculosus-1a_M_contig94.17413.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1001bp MTNEGVGSTQLSSFTNPEVRQQSSSLALLGPPPPEFHPEQQQQQQQQQQHback to top mRNA from alignment at E-siliculosus-1a_M_contig94:186010..194480- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig94.17413.1 ID=mRNA_E-siliculosus-1a_M_contig94.17413.1|Name=mRNA_E-siliculosus-1a_M_contig94.17413.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=8471bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:186010..194480- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig94:186010..194480- >mRNA_E-siliculosus-1a_M_contig94.17413.1 ID=mRNA_E-siliculosus-1a_M_contig94.17413.1|Name=mRNA_E-siliculosus-1a_M_contig94.17413.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=6006bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig94:186010..194480- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |