Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match:
D8LB85_ECTSI (Protein RER1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB85_ECTSI)
HSP 1 Score: 104 bits (260), Expect = 2.590e-22
Identity = 61/137 (44.53%), Postives = 85/137 (62.04%), Query Frame = 2
Query: 209 RRTYRQCARQAAGCVACRWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRGLSERRRHRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFTL 619
RRTY+ ++ RW LF S +F+LR+Y +GW++V Y +GI +LNN + FL+P+I P++E GL FR F RL EF W SSQK LL+A MT+F LFDIPV+ PI+++YF+ LM T+
Sbjct: 17 RRTYQYWLDRSVIYTMWRWGLFFVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQIDPESEGP-GLPTSGSDEFRPF----SRRLPEFQFWLSSQKGLLMAFGMTFFSLFDIPVFWPILLIYFIVLMFLTM 148
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match:
A0A6U4CB41_9STRA (Protein RER1 n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CB41_9STRA)
HSP 1 Score: 93.6 bits (231), Expect = 1.770e-18
Identity = 55/137 (40.15%), Postives = 84/137 (61.31%), Query Frame = 2
Query: 212 RTYRQCARQAAGCVACRWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRGLS-ERRRHRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFTL 619
RTY+ ++ V RWL FA A+++LR+Y G+++V Y++GI +LNN + FLTP++ P+A+R GL FRP RL EF W S K L+ MT+FG+FD+PV+ PI+++YF+ L + T+
Sbjct: 22 RTYQHYLDKSTIYVVPRWLGFAGVLALYLLRIYMVNGFFLVTYALGIFLLNNLIGFLTPQMDPEADRGDGLGLPTTNSDVDEFRP-FERRLPEFQFWHSCAKGLVYCFLMTFFGVFDVPVFWPILLLYFIVLFSLTM 157
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match:
A0A7R9YCX7_9STRA (Protein RER1 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCX7_9STRA)
HSP 1 Score: 92.0 bits (227), Expect = 7.100e-18
Identity = 54/137 (39.42%), Postives = 84/137 (61.31%), Query Frame = 2
Query: 212 RTYRQCARQAAGCVACRWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRGLS-ERRRHRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFTL 619
RTY+ ++A A RWL F A+++LR+Y G+++V Y++GI +LNN + FLTP++ P+A+R GL + FRP RL EF W S K L+ MT+F +FD+PV+ PI+++YF+ L + T+
Sbjct: 20 RTYQHYLDKSAIYTAPRWLSFFGILALYLLRIYVVNGFFLVTYALGIFLLNNLIGFLTPQLDPEADRGDGLGLPTTNNDVDEFRP-FERRLPEFQFWYSCIKGLVYCFMMTFFSVFDVPVFWPILLIYFIVLFSLTM 155
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match:
A0A0G4H715_VITBC (Protein RER1 n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H715_VITBC)
HSP 1 Score: 91.7 bits (226), Expect = 9.450e-18
Identity = 48/128 (37.50%), Postives = 82/128 (64.06%), Query Frame = 2
Query: 260 RWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRG--LSERRRHRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFTLCKVFRE 637
RWL F A A+F+LR+Y +G+Y+V Y +GI +LN + FL+P++ P+ E G L R +R F+ R+ EF CW+S+ + +++++ MT+F +FD+PV+ PI+++YF+ L T+ + R
Sbjct: 37 RWLFFFAMVALFVLRIYLTQGFYIVTYGLGIYLLNLLIGFLSPQVDPETE---GPVLPVRDAEEYRPFQRRLP----EFKCWQSATRAVVISITMTFFRMFDLPVFWPILLMYFLVLFVLTMKQQIRH 157
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match:
A0A4D8YZI5_SALSN (Protein RER1 n=2 Tax=Salvia TaxID=21880 RepID=A0A4D8YZI5_SALSN)
HSP 1 Score: 90.1 bits (222), Expect = 4.030e-17
Identity = 51/120 (42.50%), Postives = 76/120 (63.33%), Query Frame = 2
Query: 260 RWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRGLSERRRHRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFTL 619
RWL+ A+AA++ILRVY RG+YV++Y + I +LN + FL+P++ P+ E L G S +H FRP + RL EF W + K VA +T+F +FD+PV+ PI+ Y+ FL T+
Sbjct: 40 RWLVTLAAAAIYILRVYYARGFYVISYGLSIYILNLLIGFLSPKVDPELELLDGPSSPTKH-SEEFRPFVR-RLPEFLFWYAITKAFCVAFLLTFFSMFDVPVFWPILFFYWFFLFFLTM 157
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match:
A0A6I9TR45_SESIN (Protein RER1 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TR45_SESIN)
HSP 1 Score: 89.0 bits (219), Expect = 1.020e-16
Identity = 51/123 (41.46%), Postives = 79/123 (64.23%), Query Frame = 2
Query: 251 VACRWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRGLSERRRHRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFTL 619
+A RWL A+AA+++LRVY +G+YV++Y +GI +LN + F++P++ P+ E L G S + FRP + RL EF W ++ K VA MT+F +FD+PV+ PI+ Y+VFL T+
Sbjct: 37 IAKRWLGTLAAAAIYVLRVYYVQGFYVISYGLGIYILNLLIGFMSPKVDPELEVLDGASLPTKETDE-FRPFVR-RLPEFKFWYATTKAFCVAFLMTFFSIFDVPVFWPILFFYWVFLFFLTM 157
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match:
A0A5A7PSB8_STRAF (Protein RER1 n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PSB8_STRAF)
HSP 1 Score: 89.0 bits (219), Expect = 1.020e-16
Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 2
Query: 260 RWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRGLSERRR--HRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFTL 619
RWL A+A++++LRVY +G+YV++Y +GI +LN + F++P++ P+ E L G S R H FR F R+ EF W + K VA MT+F +FD+PV+ PI+ Y+VFL T+
Sbjct: 40 RWLGTLAAASIYVLRVYYVQGFYVISYGLGIYILNLLIGFMSPKVDPELEALDGASSPMRDPHEFRPFIRRLP----EFMFWYAITKAFCVAFMMTFFSVFDVPVFWPILFFYWVFLFFLTM 157
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match:
A0A2Z7B3C3_9LAMI (Protein RER1 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7B3C3_9LAMI)
HSP 1 Score: 89.0 bits (219), Expect = 1.020e-16
Identity = 50/119 (42.02%), Postives = 75/119 (63.03%), Query Frame = 2
Query: 260 RWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRGLSERRRHRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFT 616
RWL A+AA+++LRVY RG+Y+++Y +GI +LN + FL+P++ P+ E L G S + FRP + RL EF W ++ K VA MT+F FD+PV+ PI+ Y++FL T
Sbjct: 40 RWLGTLAAAAIYVLRVYFGRGFYIISYGIGIYILNLLIGFLSPKVDPEIEALDGASSPTKDTDE-FRPFVH-RLPEFKFWYATTKAFCVAFFMTFFSAFDVPVFWPILFFYWLFLFFLT 156
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match:
UPI0018ADEC17 (protein RER1B-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018ADEC17)
HSP 1 Score: 88.6 bits (218), Expect = 1.350e-16
Identity = 55/120 (45.83%), Postives = 75/120 (62.50%), Query Frame = 2
Query: 260 RWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRGLSERRRHRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFTL 619
RWL A AA++ILRVY +G+Y+V+Y +GI VLN + FL+P + P+ E L G S R F+P I RL EF W S K L VA MT+F +FD+PV+ PI++ Y+V L T+
Sbjct: 40 RWLGTLAVAAIYILRVYFVQGFYIVSYGLGIYVLNLLIGFLSPMVDPELEVLEGASLPTRGSDE-FKPFIR-RLPEFKFWYSITKALCVAFVMTFFSIFDVPVFWPILLFYWVVLFVLTM 157
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match:
A0A2I0A1A1_9ASPA (Protein RER1 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0A1A1_9ASPA)
HSP 1 Score: 88.2 bits (217), Expect = 1.800e-16
Identity = 54/120 (45.00%), Postives = 75/120 (62.50%), Query Frame = 2
Query: 260 RWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRGLSERRRHRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFTL 619
RWL A AAV++LRVY +G+Y+V+Y +GI VLN + FL+P + P+ E L G S R F+P I RL EF W S K VA MT+F +FD+PV+ PI++ Y++ L A T+
Sbjct: 41 RWLGSLAVAAVYVLRVYLVQGFYIVSYGLGIYVLNLLIGFLSPMVDPELETLDGASLPTRGSDE-FKPFIR-RLPEFKFWYSITKAFCVAFLMTFFSIFDVPVFWPILLFYWIVLFALTM 158
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 2.59e-22 / Id = 44.53 Expect = 1.77e-18 / Id = 40.15 Expect = 7.10e-18 / Id = 39.42 Expect = 9.45e-18 / Id = 37.50 Expect = 4.03e-17 / Id = 42.50 Expect = 1.02e-16 / Id = 41.46 Expect = 1.02e-16 / Id = 40.98 Expect = 1.02e-16 / Id = 42.02 Expect = 1.35e-16 / Id = 45.83 Expect = 1.80e-16 / Id = 45.00 Sequence D8LB85_ECTSI A0A6U4CB41_9STRA A0A7R9YCX7_9STRA A0A0G4H715_VITBC A0A4D8YZI5_SALSN A0A6I9TR45_SESIN A0A5A7PSB8_STRAF A0A2Z7B3C3_9LAMI UPI0018ADEC17 A0A2I0A1A1_9ASPA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1 Stop 1 Cds size 495 Model size 1681 Exons 6 Hectar predicted targeting category other localisation Best eggNOG OG NA|NA|NA Best tax level Eukaryota COG Functional cat. U Ec32 ortholog Ec-13_004060.2 Ec32 ortholog description RER1 family protein EggNOG OGs COG5249@1,KOG1688@2759 EggNOG free text desc. retrograde vesicle-mediated transport, Golgi to ER GOs GO:0000139,GO:0000322,GO:0000323,GO:0000324,GO:0001941,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0006621,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0007528,GO:0008104,GO:0008150,GO:0009986,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0030134,GO:0030135,GO:0030137,GO:0030173,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032507,GO:0032879,GO:0032880,GO:0033036,GO:0033130,GO:0033365,GO:0034613,GO:0035437,GO:0042886,GO:0043113,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045185,GO:0046907,GO:0048193,GO:0048518,GO:0050789,GO:0050808,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0051668,GO:0060341,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0071340,GO:0071702,GO:0071705,GO:0071840,GO:0072595,GO:0072657,GO:0097708,GO:0098588,GO:0098791,GO:0099173,GO:1903076,GO:1903078,GO:1903827,GO:1903829,GO:1904375,GO:1904377,GO:1905475,GO:1905477 Preferred name RER1 Seed eggNOG ortholog 2880.D8LB85 Seed ortholog evalue 2.4e-20 Seed ortholog score 105.5 Taxonomic scope Eukaryota
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1049.350.1
>prot_E-siliculosus-1a_F_contig1049.350.1 ID=prot_E-siliculosus-1a_F_contig1049.350.1|Name=mRNA_E-siliculosus-1a_F_contig1049.350.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=165bp
MMITASHHPRRTYRQCARQAAGCVACRWLLFAASAAVFILRVYTERGWYV back to top mRNA from alignment at E-siliculosus-1a_F_contig1049:29314..36828-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1049.350.1 ID=mRNA_E-siliculosus-1a_F_contig1049.350.1|Name=mRNA_E-siliculosus-1a_F_contig1049.350.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7515bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1049:29314..36828- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)CACCCATCCCACAGATTGACCCAGGATAGAGAGCGGGTGCCAGCCCTCAA
GGCGCAGGGCTGATTGACCAGTCCAACTGGGTCGTGCCGCTTCGTTTGGG
GGTGCGGTTGGTGTTGGCAAGGCCCGGCTGGACGAGCCAACTGCAGGGGC
AGCGACCCGAGAAAGTGTCAAGACGTGCAGT ATGATGATCACTGCATCCC
ACCACCCCCGACG GTATGATCCAAAGCAGTATCAATCATATGGCGTGGGT
GGGTGTCCGTTCGCCCCCCATCTATTGATCGTGGTACCAGTCTACACACG
TTATGGTTGTGTGCTGCTGTGTGCCTTGGCGGATCACAGCCGGGGTCACA
ACGTCACACCGCACCATCACACAGGTTGAAATCGCCTTTTTTTTTTTTTT
TTGAAAGTAAACATAACCTCACAGAAAGACTGCCCGTTCGAGATATAACC
TCAGTCGAAAGGGATTTGGTGAAGTATTTTCAGTAAGTGGTCCTCTCCCA
TTGGCCGGAGGCCGGGGCAGCGAACGCCGCGCGGAGCGTTGCCTTTTTTC
AAGGAGGCTCTGGAAACATCTCACACGACTTATTTATTTCGCAGCATAGG
ATGTGACCAATCAATAATGGGGTCCCGATGTCGCGGAGAGAAGGAAGGAG
CTGTTTGTGTCGTTGTTTCGACGTCTCTGTCTGCATCGTGCATGCCCTAA
GAAAAACACCGGCTGTTCCTCTGAAATCAAAATCAACCGTTTTTGTTTTG
GTGTTCTTATCAGCAACATGTTCATAAAACCAGTATATATATTTTTTTTT
GCAGAACCACCGATCTACGCTACAGACGTGTGGACCTCACATCGTCTACG
ACTTCGTGTGTCTCGATGTCATCATAGCGTCTACTTCCTCTGCCGATCGA
ACCGCCGCACCCATCCCACGCATGCATGCTGGCCGCCCGCCCAATTGGGG
GGCGGGGGCGCAATCGTTCCCCCTAGCAACCAGCAAGACCCAGGACCTTT
CAGCGAAACAAAAAAGAGCGGGAAGAGACTGCGTGTTTCTCGCACCCTTC
TAAGGGGCCGATGGTCCCCCTAGACTGCCGTGGCGCGGCCTTGACTCATT
GGCACGCCAGCAACGTTTAACGACCTCCACCCCTCCCCCCCGGAAACGAT
TGGCCGTCGGCAATCGGTCCTCCTGCGGGAACAACGCTCCGTCCTCTCGA
GGACGACGTGGTCAGTCAGTGGTCTAACCGCTAAGGCATCCAAAACATGA
CATGAGTAGAGGACACCCATCTCTTTCAGAAGAACGATGCCCCGTAGAAT
GAAAAACATGACATGAGTACACCCCCCCCCCCCGCGCTGACCCGCGCCTT
CTTCCAGGACGTACCGGCAGTGCGCTCGGCAAGCGGCCGGCTGCGTGGCA
TGCAG GTGACTCTCGTTCATGCAACGATTGGGAGGGGTGCCTGAACTGTT
TCTGGGTCTGTCTGTGTCTCAAAGTGAGAAGCTCGGTGTCTCAAGCCCGG
AATGGATACAGACACAACGAACGCGAGCATGCTGCGCGACAAGTAGATGA
AACACTAAAATGAAATTCAAATCGGCATGGATTCTTACGGGTTGGTTACT
TATCTGAGGAACACGAACACGAGAAGATTCTGCGTCATGGTAAACGTGCT
ATCCCTACCGCCGTTGCATGTTGGCTGCCTCCGCGTCTTCCAGCGGACGC
TACCGCGCCTTCCCGCGGTAGTGTGGGTTGAGTTCGGGGACTACAATATG
TTAATCCAGGACCGATATTGATTGATGACATAAACCTTGAGTATCATACA
CCGTGCTCATTCCAGCACACAGACATGGAGAGTGTAAACACACACAGAGA
AACACACATAGCATATGCAATGCGTGCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTGTCTGTCTCTCGAGGGGCCCCGCACTTGAACCCCCAACAG
CATACACCCCACACACACACACACATAGTTCCCAGATCGGCTGTATCGTA
TCCAAGTACCCCCAACATTGCACGACTGACTCAGGTGGTTGCTGTTCGCG
GCGTCGGCGGCGGTGTTTATCTTGCGGGTCTACACCGAGAGGGGGTGGTA
CGTGGTGGCGTACTCCGTCGGCATCTTGGTCCTGAACAACACCGTGCAGT
TTTTGACGCCCCGG GTACGTGCGTTTTGAGCAACACCGGTCTTGGACAGC
GCTGCATAATACTGGCCTTGAACAACACCCATACGGTTTTTTGGTACGCC
CCGCAGGAATGTGTGTCTGGAACAACACTACTGCTGGACAGCTTTTGACC
CCGCAGACATGTGTGTCTTTAGCAACACTGTACAGTTTTGACGCCGCAGG
TGTGTCTTGAGCCACACTCGTCGTTATCAACATTCGCTGGTACATGTATT
CTGGAACGACACAGCTTTTTACTTCCAGGTATGCTGTACGTCTTGCAAGG
AAGGCTGGTCGTCGCACTCCAGGTATGTAGTTATTGGCTGTGATCCCGAA
ACATCCGCGCCTGCTGTGGCGAATCACTGGTGTTGGTCTACGTAGGCGAA
CTCTTCTTGCACTGTTGTTACTGCGCTGGCTCGAACCGTTCGGTCCGGTC
CCATCAACGTAGAGGATTGAGGCGAAAGCTTCAAGACGTTACGAGTGTTG
CCACCATGAAAAGCCGCCCGGCGTGTGTACCTCGTCCGTCGCGACTTCTG
CGATTGAGAGGCCCGGACGAAACCACTGCCGTCGCCGTCGTCGCGCTTAA
CTAAACTGGATCGTGTTTCTTTTCTCTATTTCCATCGCCGTTTTTATTGG
CTGAACGAACTGTCCGCCTGGTTGACCAATGAAATTGTGTCGGGGCCGGG
ACTAGCAACGAAACCTTGTTGTCGCGTATTCTACCACGTTTGTTTCCAGC
GGTATCTCTGTGCGTGGGCGGTGGGCGATTTACTCGGTTCGGTGTGTGAA
GACTACGGGGTGCTGAACACGCAAGCCGGATTACCGTGATGCCCCCCCAA
ATATGCCCCGCCCCCCGCACGCGTTTCATCCGCAAGTAGCCTTCTTGGGC
GATTTTTCTTGAGACTCGCCCGCAAAATCGCTTTATTCAACGCCGTTATC
GCTACCTCGCCGCCACCCGTCACCTGCTTCTCCTTGCCTCCTACAAAAAA
TTGGCAAAAAATAAAAGATTGGCCCGGACGCGGAGAGACTACGGGGCCTC
TCTGAACGGCGGCGGCATCGTTTCAG GTACGTTTTCTCACCACAGAACGC
GCCACCGCTTGAGACCTTAGCAGTTAGGAACTTCAGCCTCAATAATTCCA
AAATGTGAGAACACACCGACAAGAACAGGTTCTCAGCCAAGAGGCCTGCA
CCATAACCGATGTTGTTGCCGAGGGGGGTCGTCTACCCCATAGACAAATT
ATATATCGGGCCTCGGCGAATAGAGGGTTCCCGCAAGTGGTGGCGCGTTC
TGTACTTGACGTTGGCTTCATCATGATTTCTACAACCAAGAAGAGTCTCC
GACGCTACTGCTGGTCTCCCCCATCCCGTGCTGCGTGCTGCGACGTAGCT
CAGACGAGCGCCTCGACGTCTACAACCTTACAAGTCTTTGCTTCTGTAGA
TGGAACATAAACCAAAACATGACCGAAAAACGTGGCCTGTCGGCTTGCAT
CGAACTACTTGCTGTCGCTGCGTTTCCCACCCGAAGCCTGCCCGCCTGTA
CGGTGTCTTTGCTCCGGAATACCGTAAGGCTGCGAGAGTTGGCACCGCCC
TAGACCGATTTTCAAAGCTCGATTGCCCCACGAAAAGAGTAGGTACGGAA
AGAGCCCGATACATGTACGTGTGCTGAAAGACCTGCACGAGATGTTTCAA
AAATGAACATTTTCGGGGCTATCACAAGCTCGAGTGTGGAGCAATCGAGC
TGTTTTGAAGATCGGCCTACGGGGTGGCGCCTTCTCTCACATACTTGCGG
TGCACCGTGGTGGTGGTGGTGGTGCCCTATGTTCCGTTGCTTCGGATCCC
CGTTGCTGTGCTGCAGATGTAGCTCCCGGCCGGTTAACCTCGACTGCTGT
CCCACCTCCAGATAAGTAGCAGTAGGTGTTTTATCGTGTTTTGTTTTTCG
GCTGCCTCGCAGAGGCAGGAGAGAGGGAGAGAACGAGACGGCGAGTGGCA
ACACAGCCCACGAACGGCTACATAACGCAGGTACCAAGTCACCCCGCGTG
TGCGTACGCCCAGCCGACACGAAACCGCCATTGTTGCGGGAGAGATCATG
TGCCGACGGCACGATGATGCCAGTCGTGATACTCACGGATGGGACGTTTG
TCCATCCCACGGCAGCAGGCTCTTCCGTCCCCGAATCGGCGGCCGCCTAA
GGGAGTTCCCGTGCTGGAGATCGTCGCAGAAATGGCTGCTGGTAGCGCTC
GCCATGACGTACTTCGGCCTGTTCGACATCCCAGTGTACACACCGATTAT
TGTCGTGTACTTCGTCTTCCTCATG GTGGGTGGTGGGTGGTTGGCCGGAG
CTGTACAGAGAGGGTCCCGCAGATTAGGCACGCACGTCATAATCGGGTCG
AGGCTCAATTTCTGATTTCGTCTCCACCTTCTCAGCTTACTTGTTCGTCG
CCACTTCCGTCGGGATGCGAGAGAACGCACGGGGGTGGGTGCGATCGATT
TTCAAAGCGTAGTTTCTCCACAACCAGGAGGGTAGATACCACTTGTCGAA
TAGGGTGGTTTTGGAAATATCTCATCGAGAGCTTTCCTGAGAGGTATCAG
TTGGCGCTCGCACCCTCCTGGTTGTGGAGAAAATGCGCTTTGAAAATCGA
TCGCACCCCCGTGCGTTCTCTCGTATCCTTGCGGTACTCTGTCGAGCACA
CGTTGTAATATAGACTTTGGTGTAATGATGCACCCCTCAGGTGTGCTTCT
TAACCCATTTTTCTTCCGTTTCAAAATGTACGCCTCTGTTTCCAAAGAAA
AATATTTCTTACCTGCCGGCCCGCAGCAGGGTTGCTTCCGCTCGGGAAAG
ATTTATTGCGTGCCACCGGTGCGCACCTTTCCCGATATCCGTTAGTTTCA
AGTGTACCGTAAGGATACAAGAGATGACACCCCTCCGAGACCGAGGCTTC
AGAGTTCGATTGCTCCACAAACACACATGTGGGTGCCGAACGAGCACGAT
ACGGTACGTCAACGGAATGCCCTCGGGGAAGTTCTCGTTCGTTCCAGATC
CGTAATTTTTTGTGTTGGCACAACCTTGGTTGTGGAGAAGTCGAGCATGA
CAATCTTTCTAGGAGGGATGCCATCTCTTGCACCCTTATTATAGTTCCAA
CTTCCTTTCCGACGCCGCTTTTTTTTCCCAACATCGGCTAGTGAGTGTAT
AGTCTGTGGCGGGTCAGGCGGATCAGTTTCATGAACTGTTTGAGACACCG
CCGACAAGATCTCGGCAAGGGGGATGGGTACCCTAGGTGAAGCAAGATAT
CACAACCTCTTTGGACCCATTTTCGAAACTTGATTACTCCGCAGCAGCAG
AGGAGAGTGGCGGTGCAGAGAATGACGGCGTTGAAACTATCTCGTCGAAA
GCTTGCCGAAGACGAATCGTTTGATTTATACGCCCTCTTTTCCGTCGTGG
AGTACTGTTGTAGTTGAGCTTTGAAATCGGTCCAGGGGGTGTGATATCTT
GTGTGACCTCCGGTAGGCCCCCCTTACATCACCGACAGGAAGAAAGGGTA
CATCGGGTCCCAAAGCGATGAGTTAGTTGTCTGTCACAAGGAATGAATGA
GAGGCTAGCCCGCTCCACATCATCACTCAGTAGAAACCCGCTGGCCGACT
AGTGTACAGAGAGAGGTAGACGTCGGGCCTTCAATGAGTGCTCAGGGTTA
GCCGTTGTACAGCAGCGCCCTCCCTGACACTGTAATCAGGGCTAAGTTTG
CAGAAGAAACAAAATGGAGTTGTTGTTACCAGGGCTAAGTGAATAAAAGA
AAAAGTATGGATTTTCGCACCCGGCGGCGAGACGTTTTTTCCACCGGAGT
TGACACTAAAACAGTCATACACTTGTAAGAGGCGGTTAGATGGCACCCTC
CCTAGCCCCGGCTTTGGAGGGATGCGAGGTCAATGGTTTAACGACAACGG
CATGCACGACTATGAGTACCCCCCCCCCCCCCCCCAAGACCAGCTTTCAA
GCCTCCATTGCTCCATAACCAAAAGGGGTGCCGACACCCCTAGACGAGAT
GTTTGCAAAACCGTCGTTTTTATTGATGGTACAGTCTTAGTTGCGGAGAA
ATCGAGCTTTGAAATCGGTGTAGGGTTGTTGCCATCTCTCCGCCTCTTAC
GGTATCTGTGCCGAGACAACTGCACGTCTAGTCAGAAACGTGGCGGTGCG
AACTCTTTAGGCTAATTGGGTGGCGTTTTCCGTGGTGCAAGAAAGCCAAT
ATACACACGACCCGCCTTGCTTAATTCCAACGCTTCCCAAGGCGTTCACC
CTGTGCAAGGTTTTTCGGGAGAGGCGACGGGCGAGTGGAAGGCGAATGTG
GATGCTATGA CACGTATCTCGCCGCAGGGGCGACAAGAGATGATGCACTG
TAGCGTCCGAGGTTTATGAGAGAGAAAACCGTATTTCTGAGAGTGTTCGG
CTGCTTGTCCCGGCCATGAGGGAACCGTTTTCGGTATTTTTCACAAGTAC
GATTTAAAAGCAAGCTGGATTTTTAGAGGGAGTATTGTTAGCTTGTGCCA
ACCCTCTCATCAACCGTAGCCTGGAACATGGCGACAGGGGCAAGACCTCG
CGTAGATGGAACGCGTGTTGTATACATAGATGAATGCAGTGGGGGCGTGA
GGTTCTCTGGCGTCTGGTTTGGGCTTTGTACGTATTTGCGTGTCGTGTGC
ATCAGACTTGAAAATACGACGTTTTTGCTCTGAGGCAGGAGTAGGCGTAC
CGTAACGGGGTCGGTGCATGCCGCGATGAGAGTTGCATGTCTTGTGACCG
TGCGGTGACGACCACCGGGCTGTCGCGTCGTGGGGGTGAGGCGAGCGTGT
ATGTATCTACAGACCCGGGCCGCACCTAAGAACCGCTTATTTTTCGTGAG
GCTAGTTTTCTCACTTTGTCTATGGGTTAGACTACCCCCACAGCGATTAT
ACAGGTTCTAGTGTAACCTTCTTGACTGAGCACCCGTTCTAATGGTCAAG
TTATTTTAACACTAAACTTCTTAACTATTTCACCAAGTTCTTGAAGCGCC
GGCCGGTTCTTCTGTAGCACCAGTAGAGGTGTACTTAGATGGTCAATATG
ACGAGAGGGGCAATGTACACATGGGTTGCCAAACTGCAGAGCCTACCGGG
TGTTCCTTGTTTGCCAGAGGATTGCGATTCAATCTCCCTCCCTCTGCGTG
GCAAATCCAACAGGGGCTTCTTGTAGAGACAGGCTATTAAGTTGGGTGGG
GTTCAAGCTCGAATTTGTGTAGTGCTCAAGGTGTTTTGCGACCTCTCCTT
GTTTTGCGGCGCCATCTTACGTAAATAAGGAGAGGTCGATCCAAGCCTTG
CAGGCTCAACTCGGT back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1049:29314..36828-
>mRNA_E-siliculosus-1a_F_contig1049.350.1 ID=mRNA_E-siliculosus-1a_F_contig1049.350.1|Name=mRNA_E-siliculosus-1a_F_contig1049.350.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=990bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1049:29314..36828- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top