mRNA_E-siliculosus-1a_F_contig1049.350.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match: D8LB85_ECTSI (Protein RER1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB85_ECTSI) HSP 1 Score: 104 bits (260), Expect = 2.590e-22 Identity = 61/137 (44.53%), Postives = 85/137 (62.04%), Query Frame = 2 Query: 209 RRTYRQCARQAAGCVACRWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRGLSERRRHRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFTL 619
RRTY+ ++ RW LF S +F+LR+Y +GW++V Y +GI +LNN + FL+P+I P++E GL FR F RL EF W SSQK LL+A MT+F LFDIPV+ PI+++YF+ LM T+
Sbjct: 17 RRTYQYWLDRSVIYTMWRWGLFFVSVCLFLLRIYLVKGWFIVTYGLGIFLLNNLIGFLSPQIDPESEGP-GLPTSGSDEFRPF----SRRLPEFQFWLSSQKGLLMAFGMTFFSLFDIPVFWPILLIYFIVLMFLTM 148
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match: A0A6U4CB41_9STRA (Protein RER1 n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CB41_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.770e-18 Identity = 55/137 (40.15%), Postives = 84/137 (61.31%), Query Frame = 2 Query: 212 RTYRQCARQAAGCVACRWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRGLS-ERRRHRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFTL 619
RTY+ ++ V RWL FA A+++LR+Y G+++V Y++GI +LNN + FLTP++ P+A+R GL FRP RL EF W S K L+ MT+FG+FD+PV+ PI+++YF+ L + T+
Sbjct: 22 RTYQHYLDKSTIYVVPRWLGFAGVLALYLLRIYMVNGFFLVTYALGIFLLNNLIGFLTPQMDPEADRGDGLGLPTTNSDVDEFRP-FERRLPEFQFWHSCAKGLVYCFLMTFFGVFDVPVFWPILLLYFIVLFSLTM 157
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match: A0A7R9YCX7_9STRA (Protein RER1 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCX7_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 7.100e-18 Identity = 54/137 (39.42%), Postives = 84/137 (61.31%), Query Frame = 2 Query: 212 RTYRQCARQAAGCVACRWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRGLS-ERRRHRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFTL 619
RTY+ ++A A RWL F A+++LR+Y G+++V Y++GI +LNN + FLTP++ P+A+R GL + FRP RL EF W S K L+ MT+F +FD+PV+ PI+++YF+ L + T+
Sbjct: 20 RTYQHYLDKSAIYTAPRWLSFFGILALYLLRIYVVNGFFLVTYALGIFLLNNLIGFLTPQLDPEADRGDGLGLPTTNNDVDEFRP-FERRLPEFQFWYSCIKGLVYCFMMTFFSVFDVPVFWPILLIYFIVLFSLTM 155
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match: A0A0G4H715_VITBC (Protein RER1 n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H715_VITBC) HSP 1 Score: 91.7 bits (226), Expect = 9.450e-18 Identity = 48/128 (37.50%), Postives = 82/128 (64.06%), Query Frame = 2 Query: 260 RWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRG--LSERRRHRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFTLCKVFRE 637
RWL F A A+F+LR+Y +G+Y+V Y +GI +LN + FL+P++ P+ E G L R +R F+ R+ EF CW+S+ + +++++ MT+F +FD+PV+ PI+++YF+ L T+ + R
Sbjct: 37 RWLFFFAMVALFVLRIYLTQGFYIVTYGLGIYLLNLLIGFLSPQVDPETE---GPVLPVRDAEEYRPFQRRLP----EFKCWQSATRAVVISITMTFFRMFDLPVFWPILLMYFLVLFVLTMKQQIRH 157
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match: A0A4D8YZI5_SALSN (Protein RER1 n=2 Tax=Salvia TaxID=21880 RepID=A0A4D8YZI5_SALSN) HSP 1 Score: 90.1 bits (222), Expect = 4.030e-17 Identity = 51/120 (42.50%), Postives = 76/120 (63.33%), Query Frame = 2 Query: 260 RWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRGLSERRRHRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFTL 619
RWL+ A+AA++ILRVY RG+YV++Y + I +LN + FL+P++ P+ E L G S +H FRP + RL EF W + K VA +T+F +FD+PV+ PI+ Y+ FL T+
Sbjct: 40 RWLVTLAAAAIYILRVYYARGFYVISYGLSIYILNLLIGFLSPKVDPELELLDGPSSPTKH-SEEFRPFVR-RLPEFLFWYAITKAFCVAFLLTFFSMFDVPVFWPILFFYWFFLFFLTM 157
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match: A0A6I9TR45_SESIN (Protein RER1 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TR45_SESIN) HSP 1 Score: 89.0 bits (219), Expect = 1.020e-16 Identity = 51/123 (41.46%), Postives = 79/123 (64.23%), Query Frame = 2 Query: 251 VACRWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRGLSERRRHRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFTL 619
+A RWL A+AA+++LRVY +G+YV++Y +GI +LN + F++P++ P+ E L G S + FRP + RL EF W ++ K VA MT+F +FD+PV+ PI+ Y+VFL T+
Sbjct: 37 IAKRWLGTLAAAAIYVLRVYYVQGFYVISYGLGIYILNLLIGFMSPKVDPELEVLDGASLPTKETDE-FRPFVR-RLPEFKFWYATTKAFCVAFLMTFFSIFDVPVFWPILFFYWVFLFFLTM 157
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match: A0A5A7PSB8_STRAF (Protein RER1 n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PSB8_STRAF) HSP 1 Score: 89.0 bits (219), Expect = 1.020e-16 Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 2 Query: 260 RWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRGLSERRR--HRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFTL 619
RWL A+A++++LRVY +G+YV++Y +GI +LN + F++P++ P+ E L G S R H FR F R+ EF W + K VA MT+F +FD+PV+ PI+ Y+VFL T+
Sbjct: 40 RWLGTLAAASIYVLRVYYVQGFYVISYGLGIYILNLLIGFMSPKVDPELEALDGASSPMRDPHEFRPFIRRLP----EFMFWYAITKAFCVAFMMTFFSVFDVPVFWPILFFYWVFLFFLTM 157
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match: A0A2Z7B3C3_9LAMI (Protein RER1 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7B3C3_9LAMI) HSP 1 Score: 89.0 bits (219), Expect = 1.020e-16 Identity = 50/119 (42.02%), Postives = 75/119 (63.03%), Query Frame = 2 Query: 260 RWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRGLSERRRHRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFT 616
RWL A+AA+++LRVY RG+Y+++Y +GI +LN + FL+P++ P+ E L G S + FRP + RL EF W ++ K VA MT+F FD+PV+ PI+ Y++FL T
Sbjct: 40 RWLGTLAAAAIYVLRVYFGRGFYIISYGIGIYILNLLIGFLSPKVDPEIEALDGASSPTKDTDE-FRPFVH-RLPEFKFWYATTKAFCVAFFMTFFSAFDVPVFWPILFFYWLFLFFLT 156
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match: UPI0018ADEC17 (protein RER1B-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018ADEC17) HSP 1 Score: 88.6 bits (218), Expect = 1.350e-16 Identity = 55/120 (45.83%), Postives = 75/120 (62.50%), Query Frame = 2 Query: 260 RWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRGLSERRRHRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFTL 619
RWL A AA++ILRVY +G+Y+V+Y +GI VLN + FL+P + P+ E L G S R F+P I RL EF W S K L VA MT+F +FD+PV+ PI++ Y+V L T+
Sbjct: 40 RWLGTLAVAAIYILRVYFVQGFYIVSYGLGIYVLNLLIGFLSPMVDPELEVLEGASLPTRGSDE-FKPFIR-RLPEFKFWYSITKALCVAFVMTFFSIFDVPVFWPILLFYWVVLFVLTM 157
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Match: A0A2I0A1A1_9ASPA (Protein RER1 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0A1A1_9ASPA) HSP 1 Score: 88.2 bits (217), Expect = 1.800e-16 Identity = 54/120 (45.00%), Postives = 75/120 (62.50%), Query Frame = 2 Query: 260 RWLLFAASAAVFILRVYTERGWYVVAYSVGILVLNNTVQFLTPRIGPDAERLRGLSERRRHRFRLFRPRIGGRLREFPCWRSSQKWLLVALAMTYFGLFDIPVYTPIIVVYFVFLMAFTL 619
RWL A AAV++LRVY +G+Y+V+Y +GI VLN + FL+P + P+ E L G S R F+P I RL EF W S K VA MT+F +FD+PV+ PI++ Y++ L A T+
Sbjct: 41 RWLGSLAVAAVYVLRVYLVQGFYIVSYGLGIYVLNLLIGFLSPMVDPELETLDGASLPTRGSDE-FKPFIR-RLPEFKFWYSITKAFCVAFLMTFFSIFDVPVFWPILLFYWIVLFALTM 158 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1049.350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1049.350.1 >prot_E-siliculosus-1a_F_contig1049.350.1 ID=prot_E-siliculosus-1a_F_contig1049.350.1|Name=mRNA_E-siliculosus-1a_F_contig1049.350.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=165bp MMITASHHPRRTYRQCARQAAGCVACRWLLFAASAAVFILRVYTERGWYVback to top mRNA from alignment at E-siliculosus-1a_F_contig1049:29314..36828- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1049.350.1 ID=mRNA_E-siliculosus-1a_F_contig1049.350.1|Name=mRNA_E-siliculosus-1a_F_contig1049.350.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7515bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1049:29314..36828- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1049:29314..36828- >mRNA_E-siliculosus-1a_F_contig1049.350.1 ID=mRNA_E-siliculosus-1a_F_contig1049.350.1|Name=mRNA_E-siliculosus-1a_F_contig1049.350.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=990bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1049:29314..36828- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |