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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1045.328.1 vs. uniprot
Match: D7FPN8_ECTSI (RecG-like helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN8_ECTSI) HSP 1 Score: 200 bits (509), Expect = 2.000e-59 Identity = 119/159 (74.84%), Postives = 124/159 (77.99%), Query Frame = 1 Query: 85 MRTAAAARGALLALXXXLLGEGALGSCSRFGGREGGXXXXXXXXXXXXXXXXXXXXXXXSSRASFVGAGSMLGRHAWRTAAARRVLTKPNFGLSRLQTIGSGAPKHGSSASTVAARELRRETSSSGNNASDELAATGTGGDGTAAARGGKKGSGPRQAR 561
MRTAAAARGALLAL LLGEGALG+CSRFGGREGG SSRASFVGAGSMLG HAWRTAAARRVLT+PNFGLSRLQT+GSGAP GSS STVAARELRRETSSSGNNASD+ A GTG DGT+A RGGKKGSGPRQAR
Sbjct: 1 MRTAAAARGALLALLLSLLGEGALGTCSRFGGREGGRKSHQLVCNQQPNSSATTAASTTSSRASFVGAGSMLGLHAWRTAAARRVLTRPNFGLSRLQTVGSGAPTRGSSTSTVAARELRRETSSSGNNASDDFADKGTG-DGTSATRGGKKGSGPRQAR 158
BLAST of mRNA_E-siliculosus-1a_F_contig1045.328.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE) HSP 1 Score: 137 bits (345), Expect = 4.450e-34 Identity = 78/89 (87.64%), Postives = 80/89 (89.89%), Query Frame = 1 Query: 295 MLGRHAWRTAAARRVLTKPNFGLSRLQTIGSGAPKHGSSASTVAARELRRETSSSGNNASDELAATGTGGDGTAAARGGKKGSGPRQAR 561
MLGRHAWRT AARRVLT+PNFGL RLQT+GSGAPK GSS STVAARELRRETSSSGNNASDE AATGTG GTAA R GKKGSGPRQAR
Sbjct: 1 MLGRHAWRTTAARRVLTRPNFGLYRLQTVGSGAPKRGSSTSTVAARELRRETSSSGNNASDEFAATGTG-YGTAATRDGKKGSGPRQAR 88
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 561 |
| Model size | 561 |
| Exons | 3 |
| Ec32 ortholog | Ec-16_001280.1 |
| Ec32 ortholog description | Nucleic acid-binding, OB-fold |
| Hectar predicted targeting category | signal peptide |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1045.328.1 >prot_E-siliculosus-1a_F_contig1045.328.1 ID=prot_E-siliculosus-1a_F_contig1045.328.1|Name=mRNA_E-siliculosus-1a_F_contig1045.328.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=187bp
CIRTQSVAGLSFWGQLLSSGPCVPASKLMRTAAAARGALLALLLLLLGEG
ALGSCSRFGGREGGGKSHHLVCNQQPHSSATTATSTTSSRASFVGAGSML
GRHAWRTAAARRVLTKPNFGLSRLQTIGSGAPKHGSSASTVAARELRRET
SSSGNNASDELAATGTGGDGTAAARGGKKGSGPRQAR back to topmRNA from alignment at E-siliculosus-1a_F_contig1045:2821..5194- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1045.328.1 ID=mRNA_E-siliculosus-1a_F_contig1045.328.1|Name=mRNA_E-siliculosus-1a_F_contig1045.328.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2374bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1045:2821..5194- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTATCCGGACACAAAGCGTTGCGGGACTTAGCTTCTGGGGGCAGTTGCT
GTCCTCAGGACCGTGTGTGCCTGCCAGTAAATTGATGAGGACTGCTGCTG
CTGCGAGAGGTGCATTGCTTGCGCTGCTGCTGTTGCTGTTGGGCGAAGGT
GCCCTAGGCTCCTGCTCGCGCTTCGGGGGCCGAGAAGGAGGAGGGAAATC
CCACCACCTTGTGTGCAACCAGGTGAGAGCTTTCCGTGGCGTCCACCAGA
TAGGAGTCCGTGAGTATTCTATAATAGAGACGAAACTCAGCAGTGCAGAA
TATGAAGATTCAAGCAGTTCAAACATGCGAGTCGCACCCAGGGCAGTGTT
GAGTCGTCGTGGGATCCTTTGACGAGCAAAACGTATACCAGTGGTTGCTC
TAGGTCAAGCAAGGGCTACCGCTTGCATGTCGTCCGCTGGTGGACCGTAC
CCCGAAAGCCAGGATTAAAAAAGAAAGTTGGTGGGTTGATACTTCTGTTG
GGCACTCGTGTCGGCCCCTATGTACTGCTGTATGCGGTCGGGTTGGATGC
AACAACGGCGGTGCCGCCCTGCAACGACGAAAAGAAACTCCGCGAGCCGC
GAGCGACGGCCGTCGTGGGTTGTCTCGGGTCCCCGGAACCAATGCATCTA
CTCGCCTCTCTCTCTCTCTCTCTAGAAACCCCCCGCGTGTGCGTGACGGA
GACATGCCGTTGGCGTTTGTGTCGGTAACTGCCGACGTCGTCGGTGGGTT
TCGACCACCAAGGGCCCCTTTTTTTACCGTCGTCCGAAACGAGGCACTGC
TGCTGCTGCTGCTGCCGCCACGACCAGTTCGACGGTCGGCGGCTACACAC
CCCGCGCCCCCTCTCTCGTCGAACACCGTCTCTAGAATCACACCTCTCAA
AGCGACGTACCGTATACGACATCAGAAGGTACCACGCCCGGTGGCAATAA
CAGTTTTCGCGTTGAAAACATTAGTTACATGGTGTTGTGTGGGGTGGTGG
TATGTTCTGTCACCCGGATCTGAGAGTTTTTCGAAGGTGTGGGCTCATGT
TGAGCCGCAAAGTTGTCACCGGCTATGGTATTCTGTGGGAGGGCATGATG
TCTTCTATGGGCGAGGTACCTTTATGGCATACGGTACACTCGCAGGACCC
GCAGTGTTCCCGCTTTGTACAGAATGCGTAGGTGACATTGGATGCCACAC
GCCATGTAATCTACCGATTTTGAAGCTCGACTACTGTACTCCCCCCGCGA
CAAAGAGGAGGTATGAATCGAACGAAATGCTTTCGGAAAGCTTTGGAAGG
GGCGATTCTGACGCCGTCCTATTCGGCACCGCCATGTGTGTTGGCTGTGG
ATAGTCGCGCTCTGATAATCGGACCAAACTGCTGTTGTTGCGTGATATCT
AATGTCACCGAGGGGATGTGGTGTGACATTGCACAATGGTGCACAATTCG
ATATCATGAGGTCGTAGTCACGTGCATCCTCTCTATGCAATCAGCCGCAC
CCCCTGCTATCCCTGCTGTTCTCCCGCCCTCTGCTCCATGGCCCTCTCTT
CACGCGATCAGCAACCGCACAGCAGCGCTACTACTGCTACTTCCACAACA
TCATCCCGGGCGTCTTTCGTAGGAGCAGGCAGCATGCTTGGGCGGCATGC
CTGGAGGACGGCCGCGGCTCGGCGGGTGCTCACGAAGCCAAACTTTGGCC
TCTCTCGCCTGCAAAGTGAGCAAACGTGAACCCAACCACTTGTTTTACGT
GTAGAGAGAAGAAGCCGCTCCCGCGCTTACGATGGGTCCCCTGCTCGACG
TGTGGAGAGAAAGCCGCTCAGTGCGTTACAAACTCAATTGACACGCCCGG
CAAAGATTGTTTTTATGCACCGCACGCCAGGGCGGGTGAAGCCCGCCAGT
ACCCTAGCAACGTTTGGTGTTTTGCACGGCTCGAGACTAACCAGCACCAC
CAACACCCCCGGCCCGGCCTCCCCACGAGACTGTGCCGAAGCACGTAACG
GTATTGCATCCCAGCACTTGCGCATCGTGAACCAGGTTCTAAATAGTCCT
GTGACCTCGAAACCACGTACTCCAAGTCGGGAGAGCACGCGCCGTGTGTC
CTAATCCGCCCCTTACTGCCCACCAAGTGTCATGACTCTTGTGTTTTTCA
CCCGTTCGCGGCCGCTCTCTCCCTTTTCCCGCGCGCCAGCCATCGGCAGC
GGCGCCCCCAAACATGGCTCGTCCGCCAGCACGGTAGCAGCAAGAGAATT
GCGACGAGAAACCAGCAGCAGCGGCAATAACGCCTCCGATGAACTCGCCG
CCACGGGGACGGGGGGGGACGGGACGGCCGCCGCGAGAGGCGGGAAGAAG
GGCAGCGGTCCCAGGCAAGCCAGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1045:2821..5194- >mRNA_E-siliculosus-1a_F_contig1045.328.1 ID=mRNA_E-siliculosus-1a_F_contig1045.328.1|Name=mRNA_E-siliculosus-1a_F_contig1045.328.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1122bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1045:2821..5194- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTATCCGGACACAAAGCGTTGCGGGACTTAGCTTCTGGGGGCAGTTGCT
GTCCTCAGGACCGTGTGTGCCTGCCAGTAAATTGATGAGGACTGCTGCTG
CTGCGAGAGGTGCATTGCTTGCGCTGCTGCTGTTGCTGTTGGGCGAAGGT
GCCCTAGGCTCCTGCTCGCGCTTCGGGGGCCGAGAAGGAGGAGGGAAATC
CCACCACCTTGTGTGCAACCAGTGTATCCGGACACAAAGCGTTGCGGGAC
TTAGCTTCTGGGGGCAGTTGCTGTCCTCAGGACCGTGTGTGCCTGCCAGT
AAATTGATGAGGACTGCTGCTGCTGCGAGAGGTGCATTGCTTGCGCTGCT
GCTGTTGCTGTTGGGCGAAGGTGCCCTAGGCTCCTGCTCGCGCTTCGGGG
GCCGAGAAGGAGGAGGGAAATCCCACCACCTTGTGTGCAACCAGCAACCG
CACAGCAGCGCTACTACTGCTACTTCCACAACATCATCCCGGGCGTCTTT
CGTAGGAGCAGGCAGCATGCTTGGGCGGCATGCCTGGAGGACGGCCGCGG
CTCGGCGGGTGCTCACGAAGCCAAACTTTGGCCTCTCTCGCCTGCAAACA
ACCGCACAGCAGCGCTACTACTGCTACTTCCACAACATCATCCCGGGCGT
CTTTCGTAGGAGCAGGCAGCATGCTTGGGCGGCATGCCTGGAGGACGGCC
GCGGCTCGGCGGGTGCTCACGAAGCCAAACTTTGGCCTCTCTCGCCTGCA
AACCATCGGCAGCGGCGCCCCCAAACATGGCTCGTCCGCCAGCACGGTAG
CAGCAAGAGAATTGCGACGAGAAACCAGCAGCAGCGGCAATAACGCCTCC
GATGAACTCGCCGCCACGGGGACGGGGGGGGACGGGACGGCCGCCGCGAG
AGGCGGGAAGAAGGGCAGCGGTCCCAGGCAAGCCAGGCCATCGGCAGCGG
CGCCCCCAAACATGGCTCGTCCGCCAGCACGGTAGCAGCAAGAGAATTGC
GACGAGAAACCAGCAGCAGCGGCAATAACGCCTCCGATGAACTCGCCGCC
ACGGGGACGGGGGGGGACGGGACGGCCGCCGCGAGAGGCGGGAAGAAGGG
CAGCGGTCCCAGGCAAGCCAGG back to top
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