mRNA_E-siliculosus-1a_F_contig1045.328.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1045.328.1
Unique NamemRNA_E-siliculosus-1a_F_contig1045.328.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1045.328.1 vs. uniprot
Match: D7FPN8_ECTSI (RecG-like helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN8_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 2.000e-59
Identity = 119/159 (74.84%), Postives = 124/159 (77.99%), Query Frame = 1 
Query:   85 MRTAAAARGALLALXXXLLGEGALGSCSRFGGREGGXXXXXXXXXXXXXXXXXXXXXXXSSRASFVGAGSMLGRHAWRTAAARRVLTKPNFGLSRLQTIGSGAPKHGSSASTVAARELRRETSSSGNNASDELAATGTGGDGTAAARGGKKGSGPRQAR 561
            MRTAAAARGALLAL   LLGEGALG+CSRFGGREGG                       SSRASFVGAGSMLG HAWRTAAARRVLT+PNFGLSRLQT+GSGAP  GSS STVAARELRRETSSSGNNASD+ A  GTG DGT+A RGGKKGSGPRQAR
Sbjct:    1 MRTAAAARGALLALLLSLLGEGALGTCSRFGGREGGRKSHQLVCNQQPNSSATTAASTTSSRASFVGAGSMLGLHAWRTAAARRVLTRPNFGLSRLQTVGSGAPTRGSSTSTVAARELRRETSSSGNNASDDFADKGTG-DGTSATRGGKKGSGPRQAR 158
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BLAST of mRNA_E-siliculosus-1a_F_contig1045.328.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 4.450e-34
Identity = 78/89 (87.64%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:  295 MLGRHAWRTAAARRVLTKPNFGLSRLQTIGSGAPKHGSSASTVAARELRRETSSSGNNASDELAATGTGGDGTAAARGGKKGSGPRQAR 561
            MLGRHAWRT AARRVLT+PNFGL RLQT+GSGAPK GSS STVAARELRRETSSSGNNASDE AATGTG  GTAA R GKKGSGPRQAR
Sbjct:    1 MLGRHAWRTTAARRVLTRPNFGLYRLQTVGSGAPKRGSSTSTVAARELRRETSSSGNNASDEFAATGTG-YGTAATRDGKKGSGPRQAR 88
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1045.328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPN8_ECTSI2.000e-5974.84RecG-like helicase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JXY9_9PHAE4.450e-3487.64ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1045contigE-siliculosus-1a_F_contig1045:2821..5194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size561
Model size561
Exons3
Ec32 orthologEc-16_001280.1
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1045.328.1prot_E-siliculosus-1a_F_contig1045.328.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1045 2821..5194 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927546.9387965-CDS-E-siliculosus-1a_F_contig1045:2820..30051622927546.9387965-CDS-E-siliculosus-1a_F_contig1045:2820..3005Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1045 2821..3005 -
1696318579.2271817-CDS-E-siliculosus-1a_F_contig1045:2820..30051696318579.2271817-CDS-E-siliculosus-1a_F_contig1045:2820..3005Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1045 2821..3005 -
1622927547.3494408-CDS-E-siliculosus-1a_F_contig1045:3479..36331622927547.3494408-CDS-E-siliculosus-1a_F_contig1045:3479..3633Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1045 3480..3633 -
1696318579.2351801-CDS-E-siliculosus-1a_F_contig1045:3479..36331696318579.2351801-CDS-E-siliculosus-1a_F_contig1045:3479..3633Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1045 3480..3633 -
1622927547.360255-CDS-E-siliculosus-1a_F_contig1045:4972..51941622927547.360255-CDS-E-siliculosus-1a_F_contig1045:4972..5194Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1045 4973..5194 -
1696318579.2428515-CDS-E-siliculosus-1a_F_contig1045:4972..51941696318579.2428515-CDS-E-siliculosus-1a_F_contig1045:4972..5194Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1045 4973..5194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1045.328.1

>prot_E-siliculosus-1a_F_contig1045.328.1 ID=prot_E-siliculosus-1a_F_contig1045.328.1|Name=mRNA_E-siliculosus-1a_F_contig1045.328.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=187bp
CIRTQSVAGLSFWGQLLSSGPCVPASKLMRTAAAARGALLALLLLLLGEG
ALGSCSRFGGREGGGKSHHLVCNQQPHSSATTATSTTSSRASFVGAGSML
GRHAWRTAAARRVLTKPNFGLSRLQTIGSGAPKHGSSASTVAARELRRET
SSSGNNASDELAATGTGGDGTAAARGGKKGSGPRQAR
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mRNA from alignment at E-siliculosus-1a_F_contig1045:2821..5194-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1045.328.1 ID=mRNA_E-siliculosus-1a_F_contig1045.328.1|Name=mRNA_E-siliculosus-1a_F_contig1045.328.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2374bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1045:2821..5194- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTATCCGGACACAAAGCGTTGCGGGACTTAGCTTCTGGGGGCAGTTGCT
GTCCTCAGGACCGTGTGTGCCTGCCAGTAAATTGATGAGGACTGCTGCTG
CTGCGAGAGGTGCATTGCTTGCGCTGCTGCTGTTGCTGTTGGGCGAAGGT
GCCCTAGGCTCCTGCTCGCGCTTCGGGGGCCGAGAAGGAGGAGGGAAATC
CCACCACCTTGTGTGCAACCAGGTGAGAGCTTTCCGTGGCGTCCACCAGA
TAGGAGTCCGTGAGTATTCTATAATAGAGACGAAACTCAGCAGTGCAGAA
TATGAAGATTCAAGCAGTTCAAACATGCGAGTCGCACCCAGGGCAGTGTT
GAGTCGTCGTGGGATCCTTTGACGAGCAAAACGTATACCAGTGGTTGCTC
TAGGTCAAGCAAGGGCTACCGCTTGCATGTCGTCCGCTGGTGGACCGTAC
CCCGAAAGCCAGGATTAAAAAAGAAAGTTGGTGGGTTGATACTTCTGTTG
GGCACTCGTGTCGGCCCCTATGTACTGCTGTATGCGGTCGGGTTGGATGC
AACAACGGCGGTGCCGCCCTGCAACGACGAAAAGAAACTCCGCGAGCCGC
GAGCGACGGCCGTCGTGGGTTGTCTCGGGTCCCCGGAACCAATGCATCTA
CTCGCCTCTCTCTCTCTCTCTCTAGAAACCCCCCGCGTGTGCGTGACGGA
GACATGCCGTTGGCGTTTGTGTCGGTAACTGCCGACGTCGTCGGTGGGTT
TCGACCACCAAGGGCCCCTTTTTTTACCGTCGTCCGAAACGAGGCACTGC
TGCTGCTGCTGCTGCCGCCACGACCAGTTCGACGGTCGGCGGCTACACAC
CCCGCGCCCCCTCTCTCGTCGAACACCGTCTCTAGAATCACACCTCTCAA
AGCGACGTACCGTATACGACATCAGAAGGTACCACGCCCGGTGGCAATAA
CAGTTTTCGCGTTGAAAACATTAGTTACATGGTGTTGTGTGGGGTGGTGG
TATGTTCTGTCACCCGGATCTGAGAGTTTTTCGAAGGTGTGGGCTCATGT
TGAGCCGCAAAGTTGTCACCGGCTATGGTATTCTGTGGGAGGGCATGATG
TCTTCTATGGGCGAGGTACCTTTATGGCATACGGTACACTCGCAGGACCC
GCAGTGTTCCCGCTTTGTACAGAATGCGTAGGTGACATTGGATGCCACAC
GCCATGTAATCTACCGATTTTGAAGCTCGACTACTGTACTCCCCCCGCGA
CAAAGAGGAGGTATGAATCGAACGAAATGCTTTCGGAAAGCTTTGGAAGG
GGCGATTCTGACGCCGTCCTATTCGGCACCGCCATGTGTGTTGGCTGTGG
ATAGTCGCGCTCTGATAATCGGACCAAACTGCTGTTGTTGCGTGATATCT
AATGTCACCGAGGGGATGTGGTGTGACATTGCACAATGGTGCACAATTCG
ATATCATGAGGTCGTAGTCACGTGCATCCTCTCTATGCAATCAGCCGCAC
CCCCTGCTATCCCTGCTGTTCTCCCGCCCTCTGCTCCATGGCCCTCTCTT
CACGCGATCAGCAACCGCACAGCAGCGCTACTACTGCTACTTCCACAACA
TCATCCCGGGCGTCTTTCGTAGGAGCAGGCAGCATGCTTGGGCGGCATGC
CTGGAGGACGGCCGCGGCTCGGCGGGTGCTCACGAAGCCAAACTTTGGCC
TCTCTCGCCTGCAAAGTGAGCAAACGTGAACCCAACCACTTGTTTTACGT
GTAGAGAGAAGAAGCCGCTCCCGCGCTTACGATGGGTCCCCTGCTCGACG
TGTGGAGAGAAAGCCGCTCAGTGCGTTACAAACTCAATTGACACGCCCGG
CAAAGATTGTTTTTATGCACCGCACGCCAGGGCGGGTGAAGCCCGCCAGT
ACCCTAGCAACGTTTGGTGTTTTGCACGGCTCGAGACTAACCAGCACCAC
CAACACCCCCGGCCCGGCCTCCCCACGAGACTGTGCCGAAGCACGTAACG
GTATTGCATCCCAGCACTTGCGCATCGTGAACCAGGTTCTAAATAGTCCT
GTGACCTCGAAACCACGTACTCCAAGTCGGGAGAGCACGCGCCGTGTGTC
CTAATCCGCCCCTTACTGCCCACCAAGTGTCATGACTCTTGTGTTTTTCA
CCCGTTCGCGGCCGCTCTCTCCCTTTTCCCGCGCGCCAGCCATCGGCAGC
GGCGCCCCCAAACATGGCTCGTCCGCCAGCACGGTAGCAGCAAGAGAATT
GCGACGAGAAACCAGCAGCAGCGGCAATAACGCCTCCGATGAACTCGCCG
CCACGGGGACGGGGGGGGACGGGACGGCCGCCGCGAGAGGCGGGAAGAAG
GGCAGCGGTCCCAGGCAAGCCAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1045:2821..5194-

>mRNA_E-siliculosus-1a_F_contig1045.328.1 ID=mRNA_E-siliculosus-1a_F_contig1045.328.1|Name=mRNA_E-siliculosus-1a_F_contig1045.328.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1122bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1045:2821..5194- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTATCCGGACACAAAGCGTTGCGGGACTTAGCTTCTGGGGGCAGTTGCT
GTCCTCAGGACCGTGTGTGCCTGCCAGTAAATTGATGAGGACTGCTGCTG
CTGCGAGAGGTGCATTGCTTGCGCTGCTGCTGTTGCTGTTGGGCGAAGGT
GCCCTAGGCTCCTGCTCGCGCTTCGGGGGCCGAGAAGGAGGAGGGAAATC
CCACCACCTTGTGTGCAACCAGTGTATCCGGACACAAAGCGTTGCGGGAC
TTAGCTTCTGGGGGCAGTTGCTGTCCTCAGGACCGTGTGTGCCTGCCAGT
AAATTGATGAGGACTGCTGCTGCTGCGAGAGGTGCATTGCTTGCGCTGCT
GCTGTTGCTGTTGGGCGAAGGTGCCCTAGGCTCCTGCTCGCGCTTCGGGG
GCCGAGAAGGAGGAGGGAAATCCCACCACCTTGTGTGCAACCAGCAACCG
CACAGCAGCGCTACTACTGCTACTTCCACAACATCATCCCGGGCGTCTTT
CGTAGGAGCAGGCAGCATGCTTGGGCGGCATGCCTGGAGGACGGCCGCGG
CTCGGCGGGTGCTCACGAAGCCAAACTTTGGCCTCTCTCGCCTGCAAACA
ACCGCACAGCAGCGCTACTACTGCTACTTCCACAACATCATCCCGGGCGT
CTTTCGTAGGAGCAGGCAGCATGCTTGGGCGGCATGCCTGGAGGACGGCC
GCGGCTCGGCGGGTGCTCACGAAGCCAAACTTTGGCCTCTCTCGCCTGCA
AACCATCGGCAGCGGCGCCCCCAAACATGGCTCGTCCGCCAGCACGGTAG
CAGCAAGAGAATTGCGACGAGAAACCAGCAGCAGCGGCAATAACGCCTCC
GATGAACTCGCCGCCACGGGGACGGGGGGGGACGGGACGGCCGCCGCGAG
AGGCGGGAAGAAGGGCAGCGGTCCCAGGCAAGCCAGGCCATCGGCAGCGG
CGCCCCCAAACATGGCTCGTCCGCCAGCACGGTAGCAGCAAGAGAATTGC
GACGAGAAACCAGCAGCAGCGGCAATAACGCCTCCGATGAACTCGCCGCC
ACGGGGACGGGGGGGGACGGGACGGCCGCCGCGAGAGGCGGGAAGAAGGG
CAGCGGTCCCAGGCAAGCCAGG
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