Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match:
D7G284_ECTSI (50S ribosomal protein L20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G284_ECTSI)
HSP 1 Score: 208 bits (530), Expect = 3.920e-66
Identity = 111/120 (92.50%), Postives = 113/120 (94.17%), Query Frame = 1
Query: 253 MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPKA 612
MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRK +K +FRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPKA
Sbjct: 1 MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKNKKR-----EFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPKA 115
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match:
W7TQD2_9STRA (50s ribosomal protein l20 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQD2_9STRA)
HSP 1 Score: 137 bits (345), Expect = 1.590e-37
Identity = 88/161 (54.66%), Postives = 114/161 (70.81%), Query Frame = 1
Query: 115 SLVRPGCSSVARHRGGGLGAAVGGGSSSSRQGPCDALGQQQQQCRGMAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAK 597
SLV ++VA R G AV GG +S PC G Q R +A NHRHKKI+K+AKGYRGR+ + F+IA+QRVEKALQ AYRDRK +K +FR LWI+RI A V+Q+GM YS F+ R+A++ LNRKVLA++AV+EPYSF+AVVETV+++
Sbjct: 8 SLVLRRAATVATIRAGSQPDAVYGGIASI---PCLLKGPFLQPSRSLA--NHRHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKR-----EFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRSQ 157
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match:
A0A4P5SLS5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A4P5SLS5_9PROT)
HSP 1 Score: 132 bits (333), Expect = 3.160e-36
Identity = 68/107 (63.55%), Postives = 86/107 (80.37%), Query Frame = 1
Query: 271 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 591
RHKKILKLAKGYRGR+K+ F++AI++VEKAL+ AYRDRKARK DFR LWI+RINAGVR+HGM YS F+N + A ++L+RKVLA++AV EP +F +VE K
Sbjct: 13 RHKKILKLAKGYRGRAKNCFRVAIEKVEKALRYAYRDRKARKR-----DFRSLWIQRINAGVREHGMIYSKFINGLKLAKIDLDRKVLADLAVREPETFAKIVEKAK 114
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match:
K2EJ18_9BACT (50S ribosomal protein L20 n=3 Tax=Bacteria TaxID=2 RepID=K2EJ18_9BACT)
HSP 1 Score: 132 bits (332), Expect = 4.470e-36
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 1
Query: 271 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVV 579
RHKK+LKLAKGYRGRSKS ++IA+QRVEKALQ AYRDR+ RK DFR LWI+RINAG R+HGM YS FVN +A +E++RKVLA++AV EP +F+ +V
Sbjct: 13 RHKKVLKLAKGYRGRSKSCYRIALQRVEKALQYAYRDRRTRKR-----DFRALWIQRINAGAREHGMTYSKFVNGLTRAGIEIDRKVLADLAVHEPIAFKEIV 110
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match:
A0A2S6SQA5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha6_Bin1 TaxID=2013088 RepID=A0A2S6SQA5_9PROT)
HSP 1 Score: 132 bits (332), Expect = 4.740e-36
Identity = 62/107 (57.94%), Postives = 89/107 (83.18%), Query Frame = 1
Query: 271 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 591
RHKKILK+AKGYRGRSK+VF++AIQRVEKALQ AYRDR+ +K +FR LWI+RINAG R+HGM YS F++ +KA++E++RK+L+++A+ P +F+++VE ++
Sbjct: 13 RHKKILKMAKGYRGRSKNVFRVAIQRVEKALQYAYRDRRTKKR-----NFRALWIQRINAGTREHGMSYSQFIHGIKKAEIEIDRKILSDIALNNPVTFKSIVEKIR 114
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match:
A0A1M3GWJ7_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium 41-28 TaxID=1895706 RepID=A0A1M3GWJ7_9PROT)
HSP 1 Score: 131 bits (330), Expect = 8.940e-36
Identity = 66/104 (63.46%), Postives = 85/104 (81.73%), Query Frame = 1
Query: 271 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVE 582
RHKK+LKLAKGYRGRSK+ F+IAIQRVEKALQ AYRDR+ RK DFR LWI+RINAG R+HG+ YS F+N KA ++++RKVLA++AV EP +F+++V+
Sbjct: 13 RHKKVLKLAKGYRGRSKNCFRIAIQRVEKALQYAYRDRRNRKR-----DFRGLWIQRINAGTREHGLTYSKFINGLTKAGIDIDRKVLADLAVHEPAAFKSIVD 111
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match:
A0A7S3GYL0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GYL0_9STRA)
HSP 1 Score: 132 bits (333), Expect = 9.020e-36
Identity = 70/118 (59.32%), Postives = 87/118 (73.73%), Query Frame = 1
Query: 238 QQCRGMAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 591
Q RGMA N RHKK++KLAKGYRGR+ F +AIQRV KA Q AYRDRK +K +FR LWI+RINA R +G+PYS+ +NK K D+ LNRKVL+E+A+TEP SF++VVE K
Sbjct: 40 QAVRGMA--NQRHKKMIKLAKGYRGRANRCFTVAIQRVTKARQYAYRDRKVKKR-----EFRALWIQRINAASRMYGLPYSILINKMVKTDIALNRKVLSELAITEPLSFKSVVEVAK 150
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match:
A0A2A5BDS7_9RICK (50S ribosomal protein L20 n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2A5BDS7_9RICK)
HSP 1 Score: 130 bits (327), Expect = 2.380e-35
Identity = 68/110 (61.82%), Postives = 86/110 (78.18%), Query Frame = 1
Query: 262 NNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVK 591
+ +RHKKI+K+AKGYRGR+K+ FKIAI++VEKALQ AYRDR+ RK DFR LWI+RINA VRQH M YS F+ +KA +E++RK+LAEMAV +P SF +VE VK
Sbjct: 10 SKNRHKKIIKMAKGYRGRAKNCFKIAIEKVEKALQYAYRDRRNRKR-----DFRGLWIQRINAAVRQHDMIYSTFMGGMKKAGIEVDRKMLAEMAVNDPASFTHIVEQVK 114
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match:
A0A7S2W484_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W484_9STRA)
HSP 1 Score: 134 bits (336), Expect = 2.520e-35
Identity = 73/124 (58.87%), Postives = 94/124 (75.81%), Query Frame = 1
Query: 241 QCRGMAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKAR-KADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPK 609
Q R MA+ +HK +LK+AKGYRGRSK+ F+ AI+RVEKALQ AYRDRK +K +FR+LWI+R+NAGVRQHGM YS F+ A AD+ LNR++LAE++ EP+SF+AVV+ VK K PK
Sbjct: 111 QSRTMASK--KHKAVLKMAKGYRGRSKNTFRAAIRRVEKALQYAYRDRKVKKR-----NFRKLWIQRLNAGVRQHGMSYSRFIRAAPLDADIVLNRRMLAELSTNEPFSFKAVVDVVKMKQQPK 227
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Match:
A0A7X2KDB2_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2KDB2_9PROT)
HSP 1 Score: 130 bits (327), Expect = 2.530e-35
Identity = 67/108 (62.04%), Postives = 86/108 (79.63%), Query Frame = 1
Query: 271 RHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKARKGLLNYPDFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKA 594
RHKK+LKLAKGYRGR+ + F+IA+++VEK LQ AYRDR+A+K FR+LWI RINAGVRQHGM YS F+N + A +EL+RKVLA+MA EP SF+A+V+T +A
Sbjct: 13 RHKKVLKLAKGYRGRNSTNFRIALEKVEKGLQYAYRDRRAKKRT-----FRQLWITRINAGVRQHGMTYSQFMNGMKLAGIELDRKVLADMAALEPESFKALVDTARA 115
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1041.319.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 3.92e-66 / Id = 92.50 Expect = 1.59e-37 / Id = 54.66 Expect = 3.16e-36 / Id = 63.55 Expect = 4.47e-36 / Id = 65.05 Expect = 4.74e-36 / Id = 57.94 Expect = 8.94e-36 / Id = 63.46 Expect = 9.02e-36 / Id = 59.32 Expect = 2.38e-35 / Id = 61.82 Expect = 2.52e-35 / Id = 58.87 Expect = 2.53e-35 / Id = 62.04 Sequence D7G284_ECTSI W7TQD2_9STRA A0A4P5SLS5_9PROT K2EJ18_9BACT A0A2S6SQA5_9PROT A0A1M3GWJ7_9PROT A0A7S3GYL0_9STRA A0A2A5BDS7_9RICK A0A7S2W484_9STRA A0A7X2KDB2_9PROT Pages
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1041.319.1
>prot_E-siliculosus-1a_F_contig1041.319.1 ID=prot_E-siliculosus-1a_F_contig1041.319.1|Name=mRNA_E-siliculosus-1a_F_contig1041.319.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=184bp
MSWSTVLSRVRPQALWSSLVRPGCSSVARHRGGGLGAAVGGGSSSSRQGP back to top mRNA from alignment at E-siliculosus-1a_F_contig1041:18728..21304-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1041.319.1 ID=mRNA_E-siliculosus-1a_F_contig1041.319.1|Name=mRNA_E-siliculosus-1a_F_contig1041.319.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2577bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1041:18728..21304- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)CCTCACTCTTGCTCGGCTTGGTCTGCCGCGCAGTATCTGTAGCGTCCAGT
AGTTCTGGCAACA ATGTCGTGGTCAACCGTGCTAAGCAGGGTGAGGCCGC
AAGCGCTGTGGTCGTCTCTTGTGAGACCAGGATGCTCATCGGTGGCGAGG
CATCGTGGAGGGGGGCTGGGAGCTGCTGTAGGCGGCGGCAGCAGCAGCTC
GCGACAAGGGCCGTGCGATGCGCTCGGTCAGCAGCAGCAGCAGTGCCGTG
GCATGGCAGCGAACAACCACAGGCATAAGAAAATCCTCAAGTTGGCGAAA
GG GTGAGTGGTGCTCCGTATAATATGTGGGCGTGCTGGTGTGAGAGCCCT
CATCACCAACATGACGGAAAGCACGCATGGGCGGGTACATCTACCGCACT
GCATTGCCATGCCTCGTATGCGAAGGTGTACTGCAGATACCTTGCCTGCA
ATGTCCGTTGTATTCACGCTTCGTAGTAAATATGACTGCTGCTGCTGTAG
GTGTGTTGGCTTACAATCTGATGCGTATTTCGCCCTTCATGTCTCCACTT
CGCTCCGTTTTTCACAGCTATCTGTTCGTATTTACATGTGGTCTGTAGTT
TGGACTCTGCTGTATCGCCGCCGCGTCTGGGGGAAGGGGGGAGAACGTTG
TCGCCGCTCCACACTAGGGGAACAGCGAAGCCATTCACGACAGTATTGTG
CGTTGTCTTCCCGCACATGAAACCTCTTTGCTCACGTTGCACACTTGCCA
CCCAAGACAAAACAATTGATCCACACTCGTGTAACCTACGAAGACTCACT
CGTAACCCCCCCCCCCCCAAGAGCCACAGCGTATATCGTACGTGCCGCCA
CCCCGCCCAACATCCCTCAACCCGGCAATACATTCACCGCGCACAGCGGG
TGCACCAGCCTAAGCATCGTCAATCCCACCCCCAACCCCTCCATGTTCTA
CCCCTGCACCTGGCGTAGGTATCGTGGAAGGAGCAAGAGCGTTTTCAAGA
TCGCCATCCAGAGGGTGGAGAAGGCGCTCCAGCAGGCCTACCGCGACAGA
AAGGCAAGGAAGGGCCTGCTGAATTACCC GTGGTTGTTTCTTTTCTCTGG
ATAGATAGAGATGGACTTGTTGTGCTGCGTCAAGAAAACGAAATGTCTTT
TGTGTGTTTGTACACGTGTAAGGAGCCCTCGGCTCTGGGGGAGGGTAAGG
TCCGGAGAGTGGTGACTATGACCTGCCACCGGAGGTTGGCTATTTTCGGG
TGTGTTGCATTGATTACATAGTCGTGTGAGTGAAGTTTGTACATGGCCGG
ATATGGATGTCCCTTTGCCATGCGCACTATGCTGTGTTGGTTTATAACCT
TGAATGCATCGCTCTGCTGTTGCACTATTGTCTGGCCAAGGCGAAACGCA
CGTTTCTGATGTGTACGTAAACACGTGTCTCTCTTCCTCCCCCTCCCCCC
CCCTCCGGATATTTCGTGTCCGCAGAACAAGAAGAGGGACTTCCGCAGAC
TGTGGATCGAGCGCATCAACGCCGGCGTGCGCCAGCACGGCATGCCGTAC
TCGGTGTTCGTCAACAAGGCCAGGAAAGCGGACGTGGAGTTGAACAGAAA
G GTGCATGGCTCGCGTGTGTGGGATTGGTCGCTTGCTGCGTTTGTTTTGT
GCTGCTGCATGTTATTTCGTCGCTATTCTCGTCAGATGGACCGGTACCAA
TGCATGGTACTGCGCAGAGCAGGAATGCTTTTTTCATGTGATGACAATAA
TAACAATAACAACAATTCTGGTTCGATGGGAGGGAAATTTCGTCCTCATC
CCAAACCCGAACAAGTTGGGTGCTGCGGTGTTTTTGAGCAGGAGAGACGG
CAGCAGTACAGTAGCAGGTCGACGTACGTGGGAATTAATCCGCGATTGAA
AACATTCGTCCATCACCTCTATCATAACCTGATGCTGTCGCGTCGATCGA
GGCTCACTGGTTTTGGCGTAGACGCGGCCTCCGTCTCCGCTGACAAGCTC
GAGCCCAAAATGCTGGTCGTGACTTTGCCCAGCTGGAGACACCATGCTAC
TTTTTCTTTTGTAGTTCCTTGATGAAATGTGTCGGGCGGGAATACAAGCC
GTTTCTATTGAGCCACGACGTCACCAGCCAGCGATTGACATGATCCCTGC
ACGACTACGGCAGGAGACGGGAGTTTTGTCGGAGGCACTCTTGTTTTTTT
TTTTTTGCCGTCCGTCCGTAAACAAGGGAGTGGCCTCTTTGGGGTTATCT
TGCCGACATCGCCGAACTCTGTGTGCACGAGTTACTGCGACAAGCCAGCA
TCATGTCACCCTTCGGATTTGGCTCAACGCCGCCCTGCCCTGCCCTGCCC
GGCTCCTTACCCACCCACGCGCCCCCTTCGTGTGTCCTTCCTTCCCTCGC
CTTTCTTCTGTACTGCATGACGCTCTCGCTTGGTGATAGGTGCTGGCCGA
GATGGCGGTCACGGAGCCGTACAGCTTCCGTGCCGTGGTGGAGACGGTCA
AGGCGAAGGGGTCGCCCAAAGCATAG CGCGGCGGGGGCGGGGCGGGGGGA
AGGGGTAGGGCGTGTTGGCGTAGTGAG back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1041:18728..21304-
>mRNA_E-siliculosus-1a_F_contig1041.319.1 ID=mRNA_E-siliculosus-1a_F_contig1041.319.1|Name=mRNA_E-siliculosus-1a_F_contig1041.319.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1104bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1041:18728..21304- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top