prot_E-siliculosus-1a_F_contig1039.300.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1039.300.1
Unique Nameprot_E-siliculosus-1a_F_contig1039.300.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length439
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1039.300.1 vs. uniprot
Match: D7FT35_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT35_ECTSI)

HSP 1 Score: 401 bits (1030), Expect = 1.990e-135
Identity = 288/332 (86.75%), Postives = 290/332 (87.35%), Query Frame = 0 
Query:  107 MMEALKRSSDVDTVNFHNAGLTGASIDVLVEGLQHTTVRCLALDYNTPPVVXXXXXXXXXXXXXXXXXXXXAEAVVATEGSSSLTRNFAGLVREGSKLKALSLRGNALEDAEVIALAEAIEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPPEQEKRAAADVKIAAQNKLAADAMKKKKDAKVETRLPLSAVTVRTGEDGRSRAVAGGSRSLAALNLADNRDLGEGGALAGLLSRIVNARKEEAEEAGXXXXXXXXXGAVVLQELHLTRCQGYAEEAGGEDDTAIAAMSFALRPTKVVV 438
            MMEALKRSSDVDTV+FHNAGLTGASIDVLVEGL HTTVRC ALDYNT PVV                     EA  ATEG SSLTRNFAGLV EGSKLKALSLRGNAL DAE IALAEAIE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLP EQEKRAAADVKIAAQNKLAADAMKKKKDAKVETRLPLSAVTVRTGEDGRSRAVAGGSRSLAALNLADNRDLGEGGALAGLLSRIVNARKEEA EAG         G+VVLQELHLTRCQGYAEEAGGEDDTAIAAMSFALRPTKVVV
Sbjct:    1 MMEALKRSSDVDTVDFHNAGLTGASIDVLVEGLPHTTVRCFALDYNTLPVVLSSSSPPTRPPPSGPTEPALEEAP-ATEGFSSLTRNFAGLVSEGSKLKALSLRGNALGDAEAIALAEAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPAEQEKRAAADVKIAAQNKLAADAMKKKKDAKVETRLPLSAVTVRTGEDGRSRAVAGGSRSLAALNLADNRDLGEGGALAGLLSRIVNARKEEAGEAGEGAGFGAGGGSVVLQELHLTRCQGYAEEAGGEDDTAIAAMSFALRPTKVVV 331
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BLAST of mRNA_E-siliculosus-1a_F_contig1039.300.1 vs. uniprot
Match: A0A836CBK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBK8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.470e-6
Identity = 52/193 (26.94%), Postives = 81/193 (41.97%), Query Frame = 0 
Query:   42 KPAGSFDADYAALCRLFEVPAHPCLASRLPGDTRNQDASAAAASKTTS-------STIQLRNFAVDLTTVRLMMEALKRSSDVDTVNFHNAGLTGASIDVLVEGLQHTTVRCLALDYNTPPVVXXXXXXXXXXXXXXXXXXXXAEAVVATEGSSSLTRNFAGLVREGSKLKALSLRGNALEDAEVIALAEAIE 227
            K  GSF  DY  LC L  V  HPC+   L         S+A  S   S         + + N  +D  ++ L+++AL  +  V  ++ HNAGL  +++  +   L  T +  L++ +N  PV                                     FA L+ +G+ L+AL+LRG+A+  A   ALA A+E
Sbjct:   26 KACGSFKGDYLQLCSLAGVIPHPCILPALRTAPSGDVNSSATLSHNASRYDMKDGDRVNVSNHVLDPASLALLLKALSLNPAVTALDLHNAGLATSAVAAIAAALPTTALSALSISFN--PVDDDTV--------------------------------FAKLLADGTALRALTLRGDAVASAGAAALAAALE 184
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1039.300.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT35_ECTSI1.990e-13586.75Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A836CBK8_9STRA3.470e-626.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 201..228
e-value: 0.27
score: 20.3
coord: 229..256
e-value: 1.9
score: 15.1
coord: 257..284
e-value: 8.5
score: 10.6
coord: 348..374
e-value: 89.0
score: 3.4
NoneNo IPR availablePANTHERPTHR46984FAMILY NOT NAMEDcoord: 191..279
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 93..280
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 229..251
e-value: 9.8E-4
score: 19.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1039contigE-siliculosus-1a_F_contig1039:11107..13495 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1039.300.1mRNA_E-siliculosus-1a_F_contig1039.300.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1039 11107..13495 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1039.300.1 ID=prot_E-siliculosus-1a_F_contig1039.300.1|Name=mRNA_E-siliculosus-1a_F_contig1039.300.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=439bp
MVEAEKLPSAVRTKTKHSDPWQATTMDEEAECLDWAAKDGQKPAGSFDAD
YAALCRLFEVPAHPCLASRLPGDTRNQDASAAAASKTTSSTIQLRNFAVD
LTTVRLMMEALKRSSDVDTVNFHNAGLTGASIDVLVEGLQHTTVRCLALD
YNTPPVVLSSSSPPTRTPSSGTTEPAAAEAVVATEGSSSLTRNFAGLVRE
GSKLKALSLRGNALEDAEVIALAEAIEENTVLCSLNLFDNKITDVGASAF
AATLRINTVLRGLSLARNSLTPASAEAFGLLLAGGYEVLPPEQEKRAAAD
VKIAAQNKLAADAMKKKKDAKVETRLPLSAVTVRTGEDGRSRAVAGGSRS
LAALNLADNRDLGEGGALAGLLSRIVNARKEEAEEAGAGAGFGAGGGAVV
LQELHLTRCQGYAEEAGGEDDTAIAAMSFALRPTKVVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt