|
|
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1039.300.1 vs. uniprot
Match: D7FT35_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT35_ECTSI) HSP 1 Score: 401 bits (1030), Expect = 1.990e-135 Identity = 288/332 (86.75%), Postives = 290/332 (87.35%), Query Frame = 1 Query: 319 MMEALKRSSDVDTVNFHNAGLTGASIDVLVEGLQHTTVRCLALDYNTPPVVXXXXXXXXXXXXXXXXXXXXAEAVVATEGSSSLTRNFAGLVREGSKLKALSLRGNALEDAEVIALAEAIEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPPEQEKRAAADVKIAAQNKLAADAMKKKKDAKVETRLPLSAVTVRTGEDGRSRAVAGGSRSLAALNLADNRDLGEGGALAGLLSRIVNARKEEAEEAGXXXXXXXXXGAVVLQELHLTRCQGYAEEAGGEDDTAIAAMSFALRPTKVVV 1314
MMEALKRSSDVDTV+FHNAGLTGASIDVLVEGL HTTVRC ALDYNT PVV EA ATEG SSLTRNFAGLV EGSKLKALSLRGNAL DAE IALAEAIE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLP EQEKRAAADVKIAAQNKLAADAMKKKKDAKVETRLPLSAVTVRTGEDGRSRAVAGGSRSLAALNLADNRDLGEGGALAGLLSRIVNARKEEA EAG G+VVLQELHLTRCQGYAEEAGGEDDTAIAAMSFALRPTKVVV
Sbjct: 1 MMEALKRSSDVDTVDFHNAGLTGASIDVLVEGLPHTTVRCFALDYNTLPVVLSSSSPPTRPPPSGPTEPALEEAP-ATEGFSSLTRNFAGLVSEGSKLKALSLRGNALGDAEAIALAEAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPAEQEKRAAADVKIAAQNKLAADAMKKKKDAKVETRLPLSAVTVRTGEDGRSRAVAGGSRSLAALNLADNRDLGEGGALAGLLSRIVNARKEEAGEAGEGAGFGAGGGSVVLQELHLTRCQGYAEEAGGEDDTAIAAMSFALRPTKVVV 331
BLAST of mRNA_E-siliculosus-1a_F_contig1039.300.1 vs. uniprot
Match: A0A836CBK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBK8_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 3.470e-6 Identity = 52/193 (26.94%), Postives = 81/193 (41.97%), Query Frame = 1 Query: 124 KPAGSFDADYAALCRLFEVPAHPCLASRLPGDTRNQDASAAAASKTTS-------STIQLRNFAVDLTTVRLMMEALKRSSDVDTVNFHNAGLTGASIDVLVEGLQHTTVRCLALDYNTPPVVXXXXXXXXXXXXXXXXXXXXAEAVVATEGSSSLTRNFAGLVREGSKLKALSLRGNALEDAEVIALAEAIE 681
K GSF DY LC L V HPC+ L S+A S S + + N +D ++ L+++AL + V ++ HNAGL +++ + L T + L++ +N PV FA L+ +G+ L+AL+LRG+A+ A ALA A+E
Sbjct: 26 KACGSFKGDYLQLCSLAGVIPHPCILPALRTAPSGDVNSSATLSHNASRYDMKDGDRVNVSNHVLDPASLALLLKALSLNPAVTALDLHNAGLATSAVAAIAAALPTTALSALSISFN--PVDDDTV--------------------------------FAKLLADGTALRALTLRGDAVASAGAAALAAALE 184
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1317 |
| Model size | 1317 |
| Exons | 4 |
| Ec32 ortholog | Ec-04_002680.1 |
| Ec32 ortholog description | Hypothetical leucine rich repeat protein |
| Hectar predicted targeting category | other localisation |
| BRITE | ko00000,ko03000 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | S |
| EggNOG OGs | KOG4308@1,KOG4308@2759 |
| EggNOG free text desc. | interleukin-8 biosynthetic process |
| KEGG ko | ko:K09257 |
| Seed eggNOG ortholog | 2880.D7FT35 |
| Seed ortholog evalue | 5e-110 |
| Seed ortholog score | 404.8 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1039.300.1 >prot_E-siliculosus-1a_F_contig1039.300.1 ID=prot_E-siliculosus-1a_F_contig1039.300.1|Name=mRNA_E-siliculosus-1a_F_contig1039.300.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=439bp
MVEAEKLPSAVRTKTKHSDPWQATTMDEEAECLDWAAKDGQKPAGSFDAD
YAALCRLFEVPAHPCLASRLPGDTRNQDASAAAASKTTSSTIQLRNFAVD
LTTVRLMMEALKRSSDVDTVNFHNAGLTGASIDVLVEGLQHTTVRCLALD
YNTPPVVLSSSSPPTRTPSSGTTEPAAAEAVVATEGSSSLTRNFAGLVRE
GSKLKALSLRGNALEDAEVIALAEAIEENTVLCSLNLFDNKITDVGASAF
AATLRINTVLRGLSLARNSLTPASAEAFGLLLAGGYEVLPPEQEKRAAAD
VKIAAQNKLAADAMKKKKDAKVETRLPLSAVTVRTGEDGRSRAVAGGSRS
LAALNLADNRDLGEGGALAGLLSRIVNARKEEAEEAGAGAGFGAGGGAVV
LQELHLTRCQGYAEEAGGEDDTAIAAMSFALRPTKVVV* back to topmRNA from alignment at E-siliculosus-1a_F_contig1039:11107..13495- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1039.300.1 ID=mRNA_E-siliculosus-1a_F_contig1039.300.1|Name=mRNA_E-siliculosus-1a_F_contig1039.300.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2389bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1039:11107..13495- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGGAGGCGGAGAAGTTGCCCTCTGCCGTGCGGACAAAGACGAAACA
CAGTGATCCCTGGCAAGCCACTACAATGGACGAGGAGGCTGAGTGCCTAG
ACTGGGCCGCGAAGGATGGGCAGAAGCCCGCAGGAAGCTTCGACGCTGAC
TACGCCGCTCTGTGTCGGTGTGTTAACCATGGCGATGACACCAACCCTGG
CCGTTGTTGTAGCAACCGCCGTGGAATCGGACACAACATTCCTGTAAAGC
AGAAAGGGTGATGAACAAATACCAGACACGTGTCAATCTTGTCAAGCAGT
TGTGCTGTTGGTCTTCCGGCTGTGTACATTTCTTCCATAGGTTGTCCTAT
TTGAGTGCACTTCCCCTCAGCTTCACTCGTATGGTTCTTGCTCTTTTCTA
CGCCTTCCTTGCCTCCCTTGTCCTCTCGCCAAACAAGACTTTTCGAGGTT
CCAGCTCATCCATGCCTCGCGTCACGACTGCCGGGAGACACCCGAAATCA
AGACGCCTCAGCAGCAGCAGCCTCGAAAACAACATCGTCGACTATCCAAC
TCCGAAACTTTGCGGTGGATCTCACGACTGTACGCCTCATGATGGAGGCG
CTCAAGAGATCCTCCGATGTCGACACGGTTAATTTTCACAACGCTGGGCT
AACAGGGGCTTCCATTGATGTTCTCGTAGAAGGCCTTCAACACACAACAG
TTCGCTGTCTCGCCCTGGACTACAACACCCCGCCGGTGGTGCTGTCGTCG
TCGTCACCGCCCACGAGAACACCCTCCTCAGGAACAACTGAGCCTGCAGC
GGCGGAGGCGGTAGTGGCGACCGAGGGTTCTTCATCGTTGACTAGAAATT
TTGCCGGCCTTGTCAGGGAAGGTGAGGACCAGCGCTCAAGATCTCATTTT
TGTGTGAGATTGTCTTGAAGGGAGCAGCTTGCTCTAAGAGGGTACGCTAC
TTGACGCCAGTTTGAAAGCTTCAAGAAACTCACAAACAAGCGCATTTCTG
TACCCATCCATGGCCAGGCTTTCGAAAAATAGATACGAAGACCGCCTTGA
TTCTTCACATGATCACAGTATCACTTGTGCTATGCCACAGCTTTAGTCTG
TTTCGCCGTACATCGGGCACTCCTGCGCTTGAAACCACACAGCCAAAATT
ATGTTCTCTTTGAATCCTACGTCCGCAGGCTCAAAGCTCAAGGCGCTATC
CCTCAGAGGCAACGCACTTGAAGACGCCGAGGTTATTGCCCTCGCTGAGG
CCATCGAAGAGAACACTGTCCTTTGCTCCCTCAATCTCTTCGACAATAAA
ATCACGGACGTCGGGTGAGTGAAGTCCGAAACTCGTAGACAACTCCGCTT
TGTTCACGGTACGGCGTGGGAGCACTGGAAGTCTCTATGGATAGGTGTGC
ACAGCGGAACAGCGGGTGGGTGTGGATGCAGGAGACGGAATAATCCTAGC
TCGTGATAACTACACGGCCATCGTCTTACCTTCCCGTTGTCTGGAGATTT
TCTAAGGTGTCGATTGCGGTAAGAAACGTGTCCCATGTAGCAATACAACG
GCAGAGCCCGGAAACTGCCGGCCAAGCCATCGTTCTGCTGGCGCTTGAAG
GCGTACCACCAGGTATTCTTTATGTGGTGCACTTTCTGTATGTCGGCTGT
TTCTACGTCAACCGCCGAGTACATACAGCAATGGGTATCACTCACAAATG
ATTGCAATAACGACATCGGACACATCTCATTTGTCGTGTATGGCTGTCCC
TTGCAACACGCATCAAGTAACGTCACCCAGTGTGCACATGCGTGTTCGTG
CCAATGCAGAGCCTCGGCGTTTGCGGCGACCCTGAGAATCAACACCGTCC
TGCGCGGACTGTCTCTGGCGAGAAATTCCCTGACCCCTGCCTCCGCGGAG
GCCTTCGGGCTGTTGCTGGCCGGAGGCTACGAGGTTCTTCCCCCAGAGCA
AGAGAAGCGGGCGGCCGCGGACGTCAAGATAGCGGCGCAGAACAAGCTGG
CCGCGGACGCCATGAAGAAGAAGAAGGACGCCAAGGTTGAGACGCGCCTA
CCGCTCAGCGCGGTGACGGTCCGGACCGGGGAGGACGGGCGAAGCAGGGC
CGTCGCCGGAGGCAGCCGGAGCTTGGCCGCGCTCAACCTCGCGGACAACC
GGGACCTTGGCGAGGGCGGGGCGCTCGCGGGACTCCTTTCGAGGATCGTG
AACGCGAGGAAAGAGGAGGCGGAGGAGGCGGGGGCGGGAGCCGGTTTCGG
GGCCGGGGGCGGGGCGGTCGTGCTCCAGGAGCTGCACTTGACGCGCTGTC
AGGGATATGCCGAGGAAGCGGGTGGAGAGGACGATACGGCGATAGCCGCG
ATGTCATTTGCGCTGAGGCCGACCAAAGTTGTGGTATAA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1039:11107..13495- >mRNA_E-siliculosus-1a_F_contig1039.300.1 ID=mRNA_E-siliculosus-1a_F_contig1039.300.1|Name=mRNA_E-siliculosus-1a_F_contig1039.300.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2634bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1039:11107..13495- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGGAGGCGGAGAAGTTGCCCTCTGCCGTGCGGACAAAGACGAAACA
CAGTGATCCCTGGCAAGCCACTACAATGGACGAGGAGGCTGAGTGCCTAG
ACTGGGCCGCGAAGGATGGGCAGAAGCCCGCAGGAAGCTTCGACGCTGAC
TACGCCGCTCTGTGTCGATGGTGGAGGCGGAGAAGTTGCCCTCTGCCGTG
CGGACAAAGACGAAACACAGTGATCCCTGGCAAGCCACTACAATGGACGA
GGAGGCTGAGTGCCTAGACTGGGCCGCGAAGGATGGGCAGAAGCCCGCAG
GAAGCTTCGACGCTGACTACGCCGCTCTGTGTCGACTTTTCGAGGTTCCA
GCTCATCCATGCCTCGCGTCACGACTGCCGGGAGACACCCGAAATCAAGA
CGCCTCAGCAGCAGCAGCCTCGAAAACAACATCGTCGACTATCCAACTCC
GAAACTTTGCGGTGGATCTCACGACTGTACGCCTCATGATGGAGGCGCTC
AAGAGATCCTCCGATGTCGACACGGTTAATTTTCACAACGCTGGGCTAAC
AGGGGCTTCCATTGATGTTCTCGTAGAAGGCCTTCAACACACAACAGTTC
GCTGTCTCGCCCTGGACTACAACACCCCGCCGGTGGTGCTGTCGTCGTCG
TCACCGCCCACGAGAACACCCTCCTCAGGAACAACTGAGCCTGCAGCGGC
GGAGGCGGTAGTGGCGACCGAGGGTTCTTCATCGTTGACTAGAAATTTTG
CCGGCCTTGTCAGGGAAGACTTTTCGAGGTTCCAGCTCATCCATGCCTCG
CGTCACGACTGCCGGGAGACACCCGAAATCAAGACGCCTCAGCAGCAGCA
GCCTCGAAAACAACATCGTCGACTATCCAACTCCGAAACTTTGCGGTGGA
TCTCACGACTGTACGCCTCATGATGGAGGCGCTCAAGAGATCCTCCGATG
TCGACACGGTTAATTTTCACAACGCTGGGCTAACAGGGGCTTCCATTGAT
GTTCTCGTAGAAGGCCTTCAACACACAACAGTTCGCTGTCTCGCCCTGGA
CTACAACACCCCGCCGGTGGTGCTGTCGTCGTCGTCACCGCCCACGAGAA
CACCCTCCTCAGGAACAACTGAGCCTGCAGCGGCGGAGGCGGTAGTGGCG
ACCGAGGGTTCTTCATCGTTGACTAGAAATTTTGCCGGCCTTGTCAGGGA
AGGCTCAAAGCTCAAGGCGCTATCCCTCAGAGGCAACGCACTTGAAGACG
CCGAGGTTATTGCCCTCGCTGAGGCCATCGAAGAGAACACTGTCCTTTGC
TCCCTCAATCTCTTCGACAATAAAATCACGGACGTCGGGCTCAAAGCTCA
AGGCGCTATCCCTCAGAGGCAACGCACTTGAAGACGCCGAGGTTATTGCC
CTCGCTGAGGCCATCGAAGAGAACACTGTCCTTTGCTCCCTCAATCTCTT
CGACAATAAAATCACGGACGTCGGAGCCTCGGCGTTTGCGGCGACCCTGA
GAATCAACACCGTCCTGCGCGGACTGTCTCTGGCGAGAAATTCCCTGACC
CCTGCCTCCGCGGAGGCCTTCGGGCTGTTGCTGGCCGGAGGCTACGAGGT
TCTTCCCCCAGAGCAAGAGAAGCGGGCGGCCGCGGACGTCAAGATAGCGG
CGCAGAACAAGCTGGCCGCGGACGCCATGAAGAAGAAGAAGGACGCCAAG
GTTGAGACGCGCCTACCGCTCAGCGCGGTGACGGTCCGGACCGGGGAGGA
CGGGCGAAGCAGGGCCGTCGCCGGAGGCAGCCGGAGCTTGGCCGCGCTCA
ACCTCGCGGACAACCGGGACCTTGGCGAGGGCGGGGCGCTCGCGGGACTC
CTTTCGAGGATCGTGAACGCGAGGAAAGAGGAGGCGGAGGAGGCGGGGGC
GGGAGCCGGTTTCGGGGCCGGGGGCGGGGCGGTCGTGCTCCAGGAGCTGC
ACTTGACGCGCTGTCAGGGATATGCCGAGGAAGCGGGTGGAGAGGACGAT
ACGGCGATAGCCGCGATGTCATTTGCGCTGAGGCCGACCAAAGTTGTGGT
ATAAAGCCTCGGCGTTTGCGGCGACCCTGAGAATCAACACCGTCCTGCGC
GGACTGTCTCTGGCGAGAAATTCCCTGACCCCTGCCTCCGCGGAGGCCTT
CGGGCTGTTGCTGGCCGGAGGCTACGAGGTTCTTCCCCCAGAGCAAGAGA
AGCGGGCGGCCGCGGACGTCAAGATAGCGGCGCAGAACAAGCTGGCCGCG
GACGCCATGAAGAAGAAGAAGGACGCCAAGGTTGAGACGCGCCTACCGCT
CAGCGCGGTGACGGTCCGGACCGGGGAGGACGGGCGAAGCAGGGCCGTCG
CCGGAGGCAGCCGGAGCTTGGCCGCGCTCAACCTCGCGGACAACCGGGAC
CTTGGCGAGGGCGGGGCGCTCGCGGGACTCCTTTCGAGGATCGTGAACGC
GAGGAAAGAGGAGGCGGAGGAGGCGGGGGCGGGAGCCGGTTTCGGGGCCG
GGGGCGGGGCGGTCGTGCTCCAGGAGCTGCACTTGACGCGCTGTCAGGGA
TATGCCGAGGAAGCGGGTGGAGAGGACGATACGGCGATAGCCGCGATGTC
ATTTGCGCTGAGGCCGACCAAAGTTGTGGTATAA back to top
|