mRNA_E-siliculosus-1a_F_contig10365.288.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.090e-9
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1

Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGMLSAQG 129
            GKY EAEPLY+RCQ ++   LGP+HPSLA+TL+NRA +L AQG
Sbjct:  187 GKYSEAEPLYDRCQAMKGKALGPEHPSLAATLNNRAELLRAQG 229

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BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.350e-9
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1

Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGMLSAQ 126
            GKY +AEPLYERCQ I E  LGP+HP +A+TL+NRAG+L AQ
Sbjct:  941 GKYTDAEPLYERCQAIYEKRLGPEHPYVATTLNNRAGLLEAQ 982

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BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 6.620e-9
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 1

Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGMLSAQ 126
            GKY+EAEPLYER Q I+E VLG +HP +AS+L+NR  +L AQ
Sbjct:   19 GKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQ 60

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BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 58.5 bits (140), Expect = 2.450e-8
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1

Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGM 114
            GKY EAEPLY+R   I E VLGPDHPS+A+TL+N AG+
Sbjct:    5 GKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42

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BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.910e-8
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1

Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGMLSAQ 126
            GKY +AEPL ER QTI E VLGP+HP +A +L+NRAG+L AQ
Sbjct:  499 GKYDDAEPLNERSQTIREKVLGPEHPDVAQSLNNRAGLLEAQ 540

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BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 6.220e-8
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 1

Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGMLSAQ 126
            GKY EAEPLYER Q I+ENVLGP+HP + ++L+NRA +L  Q
Sbjct:  661 GKYAEAEPLYERSQAIQENVLGPEHPDVGTSLNNRALLLEKQ 702

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 8.110e-8
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1

Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGMLSAQ 126
            GKY EAEPLYER Q I E  LGP+HP++A+ L+NRAG+L  Q
Sbjct:   31 GKYAEAEPLYERWQAIFETALGPEHPNVATALNNRAGLLEDQ 72

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BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.290e-7
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1

Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGML 117
            GKY EAEPLYER   I+E VLGP+HP +A++LDNRA +L
Sbjct:  694 GKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLL 732

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: A0A6H5JPL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.480e-7
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 1

Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGMLSAQ 126
            GKY EA PLY RCQ I+E VLGPDHP LA+TL N A +L  Q
Sbjct:   22 GKYTEAGPLYARCQAIQEAVLGPDHPRLATTLGNWAALLYEQ 63

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 3.140e-7
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1

Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGMLSAQ 126
            GKY EA+PLY R   I EN LGPDHP+LA+ L+NRAG+L +Q
Sbjct:  613 GKYAEADPLYLRAIEIGENTLGPDHPALATQLNNRAGLLGSQ 654

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 23

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POSITION

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Match Name	E-value	Identity	Description
A0A6H5JUC1_9PHAE	2.090e-9	67.44	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JJK0_9PHAE	2.350e-9	69.05	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K3K8_9PHAE	6.620e-9	64.29	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
UPI0013D29528	2.450e-8	68.42	tetratricopeptide repeat protein n=1 Tax=Desulfoba...	[more]
A0A6H5KIY6_9PHAE	5.910e-8	66.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KXS7_9PHAE	6.220e-8	64.29	NB-ARC domain-containing protein n=1 Tax=Ectocarpu...	[more]
A0A6H5K5H9_9PHAE	8.110e-8	64.29	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G722_ECTSI	2.290e-7	66.67	NB-ARC and TPR repeat-containing protein n=1 Tax=E...	[more]
A0A6H5JPL8_9PHAE	2.480e-7	66.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G6W2_ECTSI	3.140e-7	64.29	NB-ARC and TPR repeat-containing protein n=1 Tax=E...	[more]

Pages

Properties


Property Name	Value
Start	0
Stop	0
Cds size	558
Model size	558
Exons	4
Hectar predicted targeting category	other localisation
BRITE	ko00000,ko00001,ko03019,ko04812
Best eggNOG OG	NA\|NA\|NA
Best tax level	Eukaryota
COG Functional cat.	C
EggNOG OGs	COG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
EggNOG free text desc.	determination of stomach left/right asymmetry
KEGG Pathway	ko05132,map05132
KEGG ko	ko:K10407
Seed eggNOG ortholog	2880.D7G722
Seed ortholog evalue	9.9e-07
Seed ortholog score	60.5
Taxonomic scope	Eukaryota

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig10365:1129..2539+
coding sequence from alignment at E-siliculosus-1a_F_contig10365:1129..2539+

protein sequence of mRNA_E-siliculosus-1a_F_contig10365.288.1

>prot_E-siliculosus-1a_F_contig10365.288.1 ID=prot_E-siliculosus-1a_F_contig10365.288.1|Name=mRNA_E-siliculosus-1a_F_contig10365.288.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=186bp
GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGMLSAQGKFAEAQP
LFERALAINEVALGVDHPSTITSRAWMADLYKNQGFLDKASPLLEEVVSA
RERVQGRDHPDVASALNNRAGLLRAQGKYEEAEPLYERSQAIREKVLGPE
HPDVAQSLNNRAELLRAQGKYEEAEPLYERSQAIRE

mRNA from alignment at E-siliculosus-1a_F_contig10365:1129..2539+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig10365.288.1 ID=mRNA_E-siliculosus-1a_F_contig10365.288.1|Name=mRNA_E-siliculosus-1a_F_contig10365.288.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1411bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10365:1129..2539+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCAAATACGTGGAGGCGGAGCCACTCTATGAGCGGTGTCAGACGATAGA
GGAGAACGTCCTAGGTCCTGACCACCCAAGCTTGGCCTCAACGCTCGACA
ACCGGGCGGGGATGTTGAGCGCCCAGGTGAGAGCCGACAGAATTTTCCAG
GAAATATCTTGTAGTGTTCTATGAATATTGCGCAGTGCTTAACAACCAGA
CGCTTATGTTAAAGAATCAGGTAAGGGCCATCAATGTTTCCGGGCTCTTT
TTTTTGTGGTGATCGGTGGATGTTGTAGGGCGGCGTGCACAAGAACCGGG
CGGGGTTGCTGATGAGTCAGGTGAGAGCCAAGCGATTCTCTTCGTTCTAG
AAGATGCTTCGGATGCCCCTTGAAAGCTTTTCTAGATGTTTCTAGATGCC
TCGAGGCCTCCTTTCTGGTTCTAGAACACTTGGGACAATTTTGGCACGGT
GTCAATGGTCTGGGAGGCTGTTGTTTCTTCCGTCAATTCATGTCACGGTG
GGAACTTTGCTACGGAACATGGGGGTGCCACCGTAATTTCGCTGTCACCT
TGACATGTGTAAACTGTTCTCGAACTTTTCTTACAGGGAAAGTTCGCTGA
GGCGCAGCCGTTGTTCGAAAGAGCTCTGGCAATCAATGAAGTTGCTCTGG
GGGTGGACCACCCGAGCACGATCACGTCTCGTGCGTGGATGGCGGACTTG
TACAAGAATCAGGGTTTCCTGGACAAGGCTTCTCCTCTGTTGGAGGAGGT
TGTGAGCGCCCGTGAGCGTGTTCAAGGACGTGACCATCCGGATGTCGCTT
CAGCGCTCAACAACAGGGCGGGGTTGTTGAGAGCGCAGGTGAGAGGAGTG
AGAATTTTCCAAGATATTTCGTAGGGTTCACACTTGTTTTGAGAGTTTGG
GGCGGGGTTGTTGATGAGCCAGATGAAAGTCAAACGATGTTCTAGAAGCT
TCAAGCAAAAATATCCTCCGCAGTTCTAGATCCCACTTGTGCTGAAACAA
GACCCACGCTGTCGACGCCATTCCAGGGGAAGTATGAGGAGGCCGAGCCG
CTGTATGAGCGGTCACAGGCCATACGGGAGAAGGTGCTAGGTCCTGAGCA
CCCTGATGTAGCCCAGTCGCTCAACAACAGGGCGGAGTTGTTGAGAGCGC
AGGTGAGAGCCATCAGAAATTCCAGGAAGTTTCTTGTGGTACCCGATAGA
TTTCGGGAGTGCTGAACGACAGGGCGTTGTTGTTGGAAAGTCAGGTGAGA
GCCAAATAATGCTTCTAGATTCTCTTCTATCTAAAAGGTAATGTTTCTCC
GCAGTTCTAGATCCCACTTGTGCTGAAACAAGACCCACGCTGTCGACGCC
ATTCCAGGGGAAGTATGAGGAGGCCGAGCCGCTGTATGAGCGGTCACAGG
CCATACGGGAG

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10365:1129..2539+

>mRNA_E-siliculosus-1a_F_contig10365.288.1 ID=mRNA_E-siliculosus-1a_F_contig10365.288.1|Name=mRNA_E-siliculosus-1a_F_contig10365.288.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1116bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10365:1129..2539+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCAAATACGTGGAGGCGGAGCCACTCTATGAGCGGTGTCAGACGATAGA
GGAGAACGTCCTAGGTCCTGACCACCCAAGCTTGGCCTCAACGCTCGACA
ACCGGGCGGGGATGTTGAGCGCCCAGGGCAAATACGTGGAGGCGGAGCCA
CTCTATGAGCGGTGTCAGACGATAGAGGAGAACGTCCTAGGTCCTGACCA
CCCAAGCTTGGCCTCAACGCTCGACAACCGGGCGGGGATGTTGAGCGCCC
AGGGAAAGTTCGCTGAGGCGCAGCCGTTGTTCGAAAGAGCTCTGGCAATC
AATGAAGTTGCTCTGGGGGTGGACCACCCGAGCACGATCACGTCTCGTGC
GTGGATGGCGGACTTGTACAAGAATCAGGGTTTCCTGGACAAGGCTTCTC
CTCTGTTGGAGGAGGTTGTGAGCGCCCGTGAGCGTGTTCAAGGACGTGAC
CATCCGGATGTCGCTTCAGCGCTCAACAACAGGGCGGGGTTGTTGAGAGC
GCAGGGAAAGTTCGCTGAGGCGCAGCCGTTGTTCGAAAGAGCTCTGGCAA
TCAATGAAGTTGCTCTGGGGGTGGACCACCCGAGCACGATCACGTCTCGT
GCGTGGATGGCGGACTTGTACAAGAATCAGGGTTTCCTGGACAAGGCTTC
TCCTCTGTTGGAGGAGGTTGTGAGCGCCCGTGAGCGTGTTCAAGGACGTG
ACCATCCGGATGTCGCTTCAGCGCTCAACAACAGGGCGGGGTTGTTGAGA
GCGCAGGGGAAGTATGAGGAGGCCGAGCCGCTGTATGAGCGGTCACAGGC
CATACGGGAGAAGGTGCTAGGTCCTGAGCACCCTGATGTAGCCCAGTCGC
TCAACAACAGGGCGGAGTTGTTGAGAGCGCAGGGGAAGTATGAGGAGGCC
GAGCCGCTGTATGAGCGGTCACAGGCCATACGGGAGAAGGTGCTAGGTCC
TGAGCACCCTGATGTAGCCCAGTCGCTCAACAACAGGGCGGAGTTGTTGA
GAGCGCAGGGGAAGTATGAGGAGGCCGAGCCGCTGTATGAGCGGTCACAG
GCCATACGGGAGGGGAAGTATGAGGAGGCCGAGCCGCTGTATGAGCGGTC
ACAGGCCATACGGGAG