mRNA_E-siliculosus-1a_F_contig10365.288.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10365.288.1
Unique NamemRNA_E-siliculosus-1a_F_contig10365.288.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.090e-9
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGMLSAQG 129
            GKY EAEPLY+RCQ ++   LGP+HPSLA+TL+NRA +L AQG
Sbjct:  187 GKYSEAEPLYDRCQAMKGKALGPEHPSLAATLNNRAELLRAQG 229
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BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.350e-9
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGMLSAQ 126
            GKY +AEPLYERCQ I E  LGP+HP +A+TL+NRAG+L AQ
Sbjct:  941 GKYTDAEPLYERCQAIYEKRLGPEHPYVATTLNNRAGLLEAQ 982
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BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 6.620e-9
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGMLSAQ 126
            GKY+EAEPLYER Q I+E VLG +HP +AS+L+NR  +L AQ
Sbjct:   19 GKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQ 60
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BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 58.5 bits (140), Expect = 2.450e-8
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGM 114
            GKY EAEPLY+R   I E VLGPDHPS+A+TL+N AG+
Sbjct:    5 GKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
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BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.910e-8
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGMLSAQ 126
            GKY +AEPL ER QTI E VLGP+HP +A +L+NRAG+L AQ
Sbjct:  499 GKYDDAEPLNERSQTIREKVLGPEHPDVAQSLNNRAGLLEAQ 540
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BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 6.220e-8
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGMLSAQ 126
            GKY EAEPLYER Q I+ENVLGP+HP + ++L+NRA +L  Q
Sbjct:  661 GKYAEAEPLYERSQAIQENVLGPEHPDVGTSLNNRALLLEKQ 702
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 8.110e-8
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGMLSAQ 126
            GKY EAEPLYER Q I E  LGP+HP++A+ L+NRAG+L  Q
Sbjct:   31 GKYAEAEPLYERWQAIFETALGPEHPNVATALNNRAGLLEDQ 72
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BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.290e-7
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGML 117
            GKY EAEPLYER   I+E VLGP+HP +A++LDNRA +L
Sbjct:  694 GKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLL 732
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: A0A6H5JPL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.480e-7
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGMLSAQ 126
            GKY EA PLY RCQ I+E VLGPDHP LA+TL N A +L  Q
Sbjct:   22 GKYTEAGPLYARCQAIQEAVLGPDHPRLATTLGNWAALLYEQ 63
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 3.140e-7
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGMLSAQ 126
            GKY EA+PLY R   I EN LGPDHP+LA+ L+NRAG+L +Q
Sbjct:  613 GKYAEADPLYLRAIEIGENTLGPDHPALATQLNNRAGLLGSQ 654
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10365.288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5JUC1_9PHAE2.090e-967.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJK0_9PHAE2.350e-969.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3K8_9PHAE6.620e-964.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0013D295282.450e-868.42tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
A0A6H5KIY6_9PHAE5.910e-866.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXS7_9PHAE6.220e-864.29NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5K5H9_9PHAE8.110e-864.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G722_ECTSI2.290e-766.67NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5JPL8_9PHAE2.480e-766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6W2_ECTSI3.140e-764.29NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10365contigE-siliculosus-1a_F_contig10365:1129..2539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size558
Model size558
Exons4
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03019,ko04812
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.C
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
EggNOG free text desc.determination of stomach left/right asymmetry
KEGG Pathwayko05132,map05132
KEGG koko:K10407
Seed eggNOG ortholog2880.D7G722
Seed ortholog evalue9.9e-07
Seed ortholog score60.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10365.288.1prot_E-siliculosus-1a_F_contig10365.288.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10365 1129..2539 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927539.61329-CDS-E-siliculosus-1a_F_contig10365:1128..12541622927539.61329-CDS-E-siliculosus-1a_F_contig10365:1128..1254Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10365 1129..1254 +
1696318575.3343656-CDS-E-siliculosus-1a_F_contig10365:1128..12541696318575.3343656-CDS-E-siliculosus-1a_F_contig10365:1128..1254Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10365 1129..1254 +
1622927539.6235285-CDS-E-siliculosus-1a_F_contig10365:1714..19661622927539.6235285-CDS-E-siliculosus-1a_F_contig10365:1714..1966Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10365 1715..1966 +
1696318575.3462834-CDS-E-siliculosus-1a_F_contig10365:1714..19661696318575.3462834-CDS-E-siliculosus-1a_F_contig10365:1714..1966Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10365 1715..1966 +
1622927539.6363258-CDS-E-siliculosus-1a_F_contig10365:2154..22801622927539.6363258-CDS-E-siliculosus-1a_F_contig10365:2154..2280Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10365 2155..2280 +
1696318575.3593435-CDS-E-siliculosus-1a_F_contig10365:2154..22801696318575.3593435-CDS-E-siliculosus-1a_F_contig10365:2154..2280Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10365 2155..2280 +
1622927539.647214-CDS-E-siliculosus-1a_F_contig10365:2485..25391622927539.647214-CDS-E-siliculosus-1a_F_contig10365:2485..2539Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10365 2486..2539 +
1696318575.3672428-CDS-E-siliculosus-1a_F_contig10365:2485..25391696318575.3672428-CDS-E-siliculosus-1a_F_contig10365:2485..2539Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10365 2486..2539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10365.288.1

>prot_E-siliculosus-1a_F_contig10365.288.1 ID=prot_E-siliculosus-1a_F_contig10365.288.1|Name=mRNA_E-siliculosus-1a_F_contig10365.288.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=186bp
GKYVEAEPLYERCQTIEENVLGPDHPSLASTLDNRAGMLSAQGKFAEAQP
LFERALAINEVALGVDHPSTITSRAWMADLYKNQGFLDKASPLLEEVVSA
RERVQGRDHPDVASALNNRAGLLRAQGKYEEAEPLYERSQAIREKVLGPE
HPDVAQSLNNRAELLRAQGKYEEAEPLYERSQAIRE
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mRNA from alignment at E-siliculosus-1a_F_contig10365:1129..2539+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10365.288.1 ID=mRNA_E-siliculosus-1a_F_contig10365.288.1|Name=mRNA_E-siliculosus-1a_F_contig10365.288.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1411bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10365:1129..2539+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCAAATACGTGGAGGCGGAGCCACTCTATGAGCGGTGTCAGACGATAGA
GGAGAACGTCCTAGGTCCTGACCACCCAAGCTTGGCCTCAACGCTCGACA
ACCGGGCGGGGATGTTGAGCGCCCAGGTGAGAGCCGACAGAATTTTCCAG
GAAATATCTTGTAGTGTTCTATGAATATTGCGCAGTGCTTAACAACCAGA
CGCTTATGTTAAAGAATCAGGTAAGGGCCATCAATGTTTCCGGGCTCTTT
TTTTTGTGGTGATCGGTGGATGTTGTAGGGCGGCGTGCACAAGAACCGGG
CGGGGTTGCTGATGAGTCAGGTGAGAGCCAAGCGATTCTCTTCGTTCTAG
AAGATGCTTCGGATGCCCCTTGAAAGCTTTTCTAGATGTTTCTAGATGCC
TCGAGGCCTCCTTTCTGGTTCTAGAACACTTGGGACAATTTTGGCACGGT
GTCAATGGTCTGGGAGGCTGTTGTTTCTTCCGTCAATTCATGTCACGGTG
GGAACTTTGCTACGGAACATGGGGGTGCCACCGTAATTTCGCTGTCACCT
TGACATGTGTAAACTGTTCTCGAACTTTTCTTACAGGGAAAGTTCGCTGA
GGCGCAGCCGTTGTTCGAAAGAGCTCTGGCAATCAATGAAGTTGCTCTGG
GGGTGGACCACCCGAGCACGATCACGTCTCGTGCGTGGATGGCGGACTTG
TACAAGAATCAGGGTTTCCTGGACAAGGCTTCTCCTCTGTTGGAGGAGGT
TGTGAGCGCCCGTGAGCGTGTTCAAGGACGTGACCATCCGGATGTCGCTT
CAGCGCTCAACAACAGGGCGGGGTTGTTGAGAGCGCAGGTGAGAGGAGTG
AGAATTTTCCAAGATATTTCGTAGGGTTCACACTTGTTTTGAGAGTTTGG
GGCGGGGTTGTTGATGAGCCAGATGAAAGTCAAACGATGTTCTAGAAGCT
TCAAGCAAAAATATCCTCCGCAGTTCTAGATCCCACTTGTGCTGAAACAA
GACCCACGCTGTCGACGCCATTCCAGGGGAAGTATGAGGAGGCCGAGCCG
CTGTATGAGCGGTCACAGGCCATACGGGAGAAGGTGCTAGGTCCTGAGCA
CCCTGATGTAGCCCAGTCGCTCAACAACAGGGCGGAGTTGTTGAGAGCGC
AGGTGAGAGCCATCAGAAATTCCAGGAAGTTTCTTGTGGTACCCGATAGA
TTTCGGGAGTGCTGAACGACAGGGCGTTGTTGTTGGAAAGTCAGGTGAGA
GCCAAATAATGCTTCTAGATTCTCTTCTATCTAAAAGGTAATGTTTCTCC
GCAGTTCTAGATCCCACTTGTGCTGAAACAAGACCCACGCTGTCGACGCC
ATTCCAGGGGAAGTATGAGGAGGCCGAGCCGCTGTATGAGCGGTCACAGG
CCATACGGGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10365:1129..2539+

>mRNA_E-siliculosus-1a_F_contig10365.288.1 ID=mRNA_E-siliculosus-1a_F_contig10365.288.1|Name=mRNA_E-siliculosus-1a_F_contig10365.288.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1116bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10365:1129..2539+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCAAATACGTGGAGGCGGAGCCACTCTATGAGCGGTGTCAGACGATAGA
GGAGAACGTCCTAGGTCCTGACCACCCAAGCTTGGCCTCAACGCTCGACA
ACCGGGCGGGGATGTTGAGCGCCCAGGGCAAATACGTGGAGGCGGAGCCA
CTCTATGAGCGGTGTCAGACGATAGAGGAGAACGTCCTAGGTCCTGACCA
CCCAAGCTTGGCCTCAACGCTCGACAACCGGGCGGGGATGTTGAGCGCCC
AGGGAAAGTTCGCTGAGGCGCAGCCGTTGTTCGAAAGAGCTCTGGCAATC
AATGAAGTTGCTCTGGGGGTGGACCACCCGAGCACGATCACGTCTCGTGC
GTGGATGGCGGACTTGTACAAGAATCAGGGTTTCCTGGACAAGGCTTCTC
CTCTGTTGGAGGAGGTTGTGAGCGCCCGTGAGCGTGTTCAAGGACGTGAC
CATCCGGATGTCGCTTCAGCGCTCAACAACAGGGCGGGGTTGTTGAGAGC
GCAGGGAAAGTTCGCTGAGGCGCAGCCGTTGTTCGAAAGAGCTCTGGCAA
TCAATGAAGTTGCTCTGGGGGTGGACCACCCGAGCACGATCACGTCTCGT
GCGTGGATGGCGGACTTGTACAAGAATCAGGGTTTCCTGGACAAGGCTTC
TCCTCTGTTGGAGGAGGTTGTGAGCGCCCGTGAGCGTGTTCAAGGACGTG
ACCATCCGGATGTCGCTTCAGCGCTCAACAACAGGGCGGGGTTGTTGAGA
GCGCAGGGGAAGTATGAGGAGGCCGAGCCGCTGTATGAGCGGTCACAGGC
CATACGGGAGAAGGTGCTAGGTCCTGAGCACCCTGATGTAGCCCAGTCGC
TCAACAACAGGGCGGAGTTGTTGAGAGCGCAGGGGAAGTATGAGGAGGCC
GAGCCGCTGTATGAGCGGTCACAGGCCATACGGGAGAAGGTGCTAGGTCC
TGAGCACCCTGATGTAGCCCAGTCGCTCAACAACAGGGCGGAGTTGTTGA
GAGCGCAGGGGAAGTATGAGGAGGCCGAGCCGCTGTATGAGCGGTCACAG
GCCATACGGGAGGGGAAGTATGAGGAGGCCGAGCCGCTGTATGAGCGGTC
ACAGGCCATACGGGAG
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