mRNA_E-siliculosus-1a_F_contig1030.255.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1030.255.1 vs. uniprot
Match: D8LR18_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR18_ECTSI) HSP 1 Score: 540 bits (1390), Expect = 4.060e-179 Identity = 410/549 (74.68%), Postives = 416/549 (75.77%), Query Frame = 1 Query: 73 MDATCWMCQRCGHEVPIDNREVHEAQCRRNSPAQLLSPPPVTGAPPSPFDPDDQPFSRNVFTPAQPPAAEGAAPTPSQPWREVDIRAAAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRRQVQEWEQRQDWERSFTSSSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGETTTTWACAACTYLNDFGVSRCDMCGTRMSPQQRPPDATYRDTLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDQGLLDGRTTISGAAAGSAIGAIGGALLSAVQPGARASGVMSSMFQGALMGXXAXAALGGLSDEPGAGXXXXXXXXXXXXXRSSDNEFRRQRRR---QVSSFEYVRGPTARVRRGRDVVSEMESLMLARRLEALSLPASAAAMRREGRGAXXXAEAGSSVYEGILRQLAEAHNHDAGGXXXXXXXXASPASARAIAALPGETLTAGALAHLKDDGRQCCICLEDFEAGEKATRLPCLHLYHTACIENWLQTSGTCPQCKFRVD 1710
MDATCW+CQRCGHEVPIDNREVHEAQCRRNSPAQLLSPPPVTG+PPSPFDPD+QPFSRNVFTPAQPPAAE AA QP AASXXXXXXXXXXX ST SG+TTT WACAACTYLNDFGVSRCDMCGTRMSPQQRPPDATYRDTLIG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D QGLLDGRTTISGAAAGSAIGAIGGALLSAVQPGARASGVMSSMFQGALMG A AALGGLSDEPGAGXXXXXXXXXXXXX QVSSFE+VRGPTARVRRGRDVVSEMESLMLARRLEALSLPASAAAMRREG XXX SS+Y GILRQLAEA NHDA G XXXX SPASARAIAALPGE LTAGALAHLKDDGRQCCICLEDFEAGEKATRLPCLHLYHT CIENWLQTSGTCPQCKFRVD
Sbjct: 1 MDATCWVCQRCGHEVPIDNREVHEAQCRRNSPAQLLSPPPVTGSPPSPFDPDNQPFSRNVFTPAQPPAAEAAARESGQPCGFAAAGRGAASXXXXXXXXXXX------------------------------------------STEGEGE------------------------------SGDTTT-WACAACTYLNDFGVSRCDMCGTRMSPQQRPPDATYRDTLIGGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-QGLLDGRTTISGAAAGSAIGAIGGALLSAVQPGARASGVMSSMFQGALMGGMAGAALGGLSDEPGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVSSFEFVRGPTARVRRGRDVVSEMESLMLARRLEALSLPASAAAMRREG--GXXXXXXXSSIYAGILRQLAEAQNHDAAGGDAXXXXGTSPASARAIAALPGEALTAGALAHLKDDGRQCCICLEDFEAGEKATRLPCLHLYHTVCIENWLQTSGTCPQCKFRVD 473
BLAST of mRNA_E-siliculosus-1a_F_contig1030.255.1 vs. uniprot
Match: A0A6H5L176_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L176_9PHAE) HSP 1 Score: 477 bits (1227), Expect = 6.490e-153 Identity = 439/638 (68.81%), Postives = 451/638 (70.69%), Query Frame = 1 Query: 73 MDATCWMCQRCGHEVPIDNREVHEAQCRRNSPAQLLSPP-----PVTGAPPSPFDPDDQPFSRNVFTPAQPPAAEGAAPTPSQPWREVDIRAAAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRRQVQEWEQRQDWERSFTSSSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------SGETTTTWACAACTYLNDFGVSRCDMCGTRMSPQQRPPDATYRDTLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDQGLLDGRTTISGAAAGSAIGAIGGALLSAVQPGARASGVMSSMFQGALMGXXAXAALGGLSDEPGAGXXXXXXXXXXXXXRSSDNE--FRRQRRRQVSSFEYVRGPTARVRRGRDVVSEMESLMLARRLEALSLPASAAAMRREGRGAXXXAEAGSSVYEGILRQLAEAHNHDAGGXXXXXXXXASPASARAIAALPGETLTAGALAHLKDDGRQCCICLEDFEAGEKATRLPCLHLYHTACIENWLQTSGTCPQCKFRVD 1710
MDAT WMCQRCGHEVPIDNREVHEAQCRRNSPA+LLSP PVTG+ PSPFDPDD P SRNVFTPAQPPAAE AAPTPSQPWREVDIRAAAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRRQVQEWEQRQDWERSFTSSS T XXXXXXXXXXX XXXXXXXXXXXXXX SGETTTTWACAACTYLNDFGVSRCDMCGTRMSPQQRPPDATYRDTLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EDDQGLLDGR+TISGAAAGSAI QP XX XAALGGLS+EPGAG XXXXXXXXXX FRRQ RRQVSS E+VRGPTARVRRGRD VSE+ESLMLAR L+A ILR+LAEAHNHDA G XXXXXXXASPASARAIAALPGETLTAG+LAHLKDDGRQCCICLE+FEAGE+ATRLPCLHLYH+ CIENWLQTSGTCPQCKFRVD
Sbjct: 1 MDATYWMCQRCGHEVPIDNREVHEAQCRRNSPARLLSPSAAAARPVTGSLPSPFDPDDLPVSRNVFTPAQPPAAEAAAPTPSQPWREVDIRAAAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRRQVQEWEQRQDWERSFTSSSPTDASSDSGFAXXXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASSTEGEGKSGETTTTWACAACTYLNDFGVSRCDMCGTRMSPQQRPPDATYRDTLIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--EDDQGLLDGRSTISGAAAGSAIXXXXXXXXXXXQPXXXXXXXXXXXXXXXXXXXXXXAALGGLSNEPGAGGDSXXXXXXXXXXXXXXXXXXFRRQWRRQVSSVEFVRGPTARVRRGRDAVSEVESLMLAR-LDAR-----------------------------ILRRLAEAHNHDAAGGXXXXXXXASPASARAIAALPGETLTAGSLAHLKDDGRQCCICLEEFEAGERATRLPCLHLYHSVCIENWLQTSGTCPQCKFRVD 606
BLAST of mRNA_E-siliculosus-1a_F_contig1030.255.1 vs. uniprot
Match: A0A0L0FCC5_9EUKA (RING-type domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FCC5_9EUKA) HSP 1 Score: 93.6 bits (231), Expect = 7.900e-19 Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 1 Query: 1504 IAALPGETLTAGALAHLKDDGRQCCICLEDFEAGEKATRLPCLHLYHTACIENWLQTSGTCPQCKFRVD 1710
I ALP ETL+ A+A L++ + CCICLEDF+AGEK RLPCLH YH CI+ WL GTCP CK ++
Sbjct: 54 IHALPTETLSKAAIAKLEEGSQNCCICLEDFKAGEKMKRLPCLHTYHDHCIDEWLSRRGTCPVCKHALE 122
BLAST of mRNA_E-siliculosus-1a_F_contig1030.255.1 vs. uniprot
Match: A0A8J6CPI3_9ROSI (RING-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CPI3_9ROSI) HSP 1 Score: 77.8 bits (190), Expect = 5.350e-13 Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 1 Query: 1483 SPASARAIAALPGETLTAGALAHLKDDGRQCCICLEDFEAGEKATRLPCLHLYHTACIENWLQTSGTCPQCKF 1701
+PAS +I A+PG ++ G+ CCICLE+FE E+ +PC H++H+ CIE WL+ GTCP C+F
Sbjct: 35 APASKASIEAMPG--------IKVEKSGKDCCICLEEFEVDEEGREMPCKHVFHSGCIEKWLEIHGTCPICRF 99
BLAST of mRNA_E-siliculosus-1a_F_contig1030.255.1 vs. uniprot
Match: A0A2P6R2V5_ROSCH (Putative aminoacyltransferase, E1 ubiquitin-activating enzyme n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6R2V5_ROSCH) HSP 1 Score: 79.3 bits (194), Expect = 6.930e-13 Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 1 Query: 1384 EAGSSVYEGILRQLAEAHNHDAGGXXXXXXXXASPASARAIAALPGETLTAGALAHLKDDGRQCCICLEDFEAGEKATRLPCLHLYHTACIENWLQTSGTCPQCKFRV 1707
E+GS + ++RQLA+ + PAS +IAA+P T+ + GR+C ICL+ FE G +A +PC HL+H C+E WL+ GTCP C+F +
Sbjct: 72 ESGSGGIDSLMRQLAKDGH--------------PPASKASIAAMPTVTVA--------ESGRECPICLDQFEVGGEAKEMPCSHLFHGDCVEKWLKVHGTCPVCRFTM 157
BLAST of mRNA_E-siliculosus-1a_F_contig1030.255.1 vs. uniprot
Match: A0A2P5YC45_GOSBA (RING-type domain-containing protein n=4 Tax=Gossypium TaxID=3633 RepID=A0A2P5YC45_GOSBA) HSP 1 Score: 77.0 bits (188), Expect = 1.720e-12 Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 1 Query: 1483 SPASARAIAALPGETLTAGALAHLKDDGRQCCICLEDFEAGEKATRLPCLHLYHTACIENWLQTSGTCPQCKF 1701
+PAS +I A+P +++ G+ CCICLE+FE E+ +PC HL+H+ CIE WL+ GTCP C+F
Sbjct: 35 TPASKASIKAMPR--------IQVEESGKDCCICLEEFEVDEEGRAMPCKHLFHSGCIEKWLEIHGTCPICRF 99
BLAST of mRNA_E-siliculosus-1a_F_contig1030.255.1 vs. uniprot
Match: A0A4D9BPB7_SALSN (RING-type domain-containing protein n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9BPB7_SALSN) HSP 1 Score: 77.0 bits (188), Expect = 3.270e-12 Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 1 Query: 1486 PASARAIAALPGETLTAGALAHLKDDGRQCCICLEDFEAGEKATRLPCLHLYHTACIENWLQTSGTCPQCKFRV 1707
PAS AI A+ + G ++ G QC ICLED+EAGEKA R+PC H +H CIE WL+ G+CP C++ +
Sbjct: 90 PASKAAIDAMETVEVVVGE----EEGGDQCVICLEDWEAGEKAKRMPCKHTFHGECIEKWLKIDGSCPVCRYEM 159
BLAST of mRNA_E-siliculosus-1a_F_contig1030.255.1 vs. uniprot
Match: A0A1U8I433_GOSHI (E3 ubiquitin-protein ligase RING1-like n=20 Tax=Gossypium TaxID=3633 RepID=A0A1U8I433_GOSHI) HSP 1 Score: 75.5 bits (184), Expect = 4.510e-12 Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 1 Query: 1486 PASARAIAALPGETLTAGALAHLKDDGRQCCICLEDFEAGEKATRLPCLHLYHTACIENWLQTSGTCPQCKF 1701
PAS +I A+P +++ G+ CCICLE+FE E+ +PC H++H++CIE WL+ GTCP C+F
Sbjct: 36 PASKASIEAMPR--------IKVEETGKDCCICLEEFEVDEEGREMPCKHVFHSSCIEKWLEIHGTCPICRF 99
BLAST of mRNA_E-siliculosus-1a_F_contig1030.255.1 vs. uniprot
Match: A0A5D2F4P4_GOSDA (RING-type domain-containing protein n=1 Tax=Gossypium darwinii TaxID=34276 RepID=A0A5D2F4P4_GOSDA) HSP 1 Score: 77.0 bits (188), Expect = 4.980e-12 Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 1 Query: 1483 SPASARAIAALPGETLTAGALAHLKDDGRQCCICLEDFEAGEKATRLPCLHLYHTACIENWLQTSGTCPQCKF 1701
+PAS +I A+P +++ G+ CCICLE+FE E+ +PC HL+H+ CIE WL+ GTCP C+F
Sbjct: 35 TPASKASIKAMPR--------IQVEESGKDCCICLEEFEVDEEGRAMPCKHLFHSGCIEKWLEIHGTCPICRF 99
BLAST of mRNA_E-siliculosus-1a_F_contig1030.255.1 vs. uniprot
Match: A0A7S2I4A8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I4A8_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 7.650e-12 Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 1 Query: 1480 ASPASARAIAALPGETLTAGALAHLKDDGRQCCICLEDFEAGEKATRLPCLHLYHTACIENWLQTSGTCPQCKFRV 1707
A PAS +AI LP ++T L + ++ R+CCICL++ G++ TRLPC H++H CI +WL S TCP C++ +
Sbjct: 61 APPASKKAILQLPTVSVTPEDL--VDENNRECCICLDENNLGDRVTRLPCAHIFHQKCIYDWLLKSCTCPVCRYEL 134 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1030.255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1030.255.1 >prot_E-siliculosus-1a_F_contig1030.255.1 ID=prot_E-siliculosus-1a_F_contig1030.255.1|Name=mRNA_E-siliculosus-1a_F_contig1030.255.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=547bp MDATCWMCQRCGHEVPIDNREVHEAQCRRNSPAQLLSPPPVTGAPPSPFDback to top mRNA from alignment at E-siliculosus-1a_F_contig1030:7587..12232+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1030.255.1 ID=mRNA_E-siliculosus-1a_F_contig1030.255.1|Name=mRNA_E-siliculosus-1a_F_contig1030.255.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4646bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1030:7587..12232+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1030:7587..12232+ >mRNA_E-siliculosus-1a_F_contig1030.255.1 ID=mRNA_E-siliculosus-1a_F_contig1030.255.1|Name=mRNA_E-siliculosus-1a_F_contig1030.255.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3282bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1030:7587..12232+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |