Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match:
D7G723_ECTSI (DNA topoisomerase I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G723_ECTSI)
HSP 1 Score: 114 bits (286), Expect = 5.140e-31
Identity = 69/103 (66.99%), Postives = 72/103 (69.90%), Query Frame = 1
Query: 7 GTERSGQEGGVPRHHPGDTRQGVRG-QTGIL*PRSGPGEEARRILDRFH-------TWIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDVVANATAA 291
GTE SGQEG VPRHHP DTRQGVRG +T PRSGP EEAR ILD W FVAP L AGRVQ VA A V+ER+ A LK SADCWDVVANATAA
Sbjct: 16 GTESSGQEGSVPRHHPEDTRQGVRGTRTDWREPRSGPREEARCILDCLAGFTLTPVIWNFVAPGLSAGRVQSVAPAMVIERECARLKSNSADCWDVVANATAA 118
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match:
D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI)
HSP 1 Score: 79.0 bits (193), Expect = 4.770e-15
Identity = 45/65 (69.23%), Postives = 47/65 (72.31%), Query Frame = 1
Query: 118 EEARRILDRFH-------TWIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDVVANATAA 291
+EARRILDR W FVAP L AGRVQ VALA VVER+RA LKFKSAD WDVVAN TAA
Sbjct: 249 QEARRILDRLAGFTLTPVIWNFVAPGLSAGRVQSVALAMVVERERARLKFKSADYWDVVANVTAA 313
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match:
A0A010YGE9_9ACTN (DNA topoisomerase 1 n=4 Tax=Cryptosporangium TaxID=65502 RepID=A0A010YGE9_9ACTN)
HSP 1 Score: 59.7 bits (143), Expect = 2.760e-8
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 118 EEARRILDRFH-------TWIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDV 270
+E RRILDR + W V PRL AGRVQ VA VVER+RA +KF+SA+ WD+
Sbjct: 172 QETRRILDRLYGYEVSPVLWKKVMPRLSAGRVQSVATRIVVERERARMKFRSAEYWDI 229
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match:
A0A543AWD6_9ACTN (DNA topoisomerase 1 n=1 Tax=Stackebrandtia endophytica TaxID=1496996 RepID=A0A543AWD6_9ACTN)
HSP 1 Score: 58.9 bits (141), Expect = 5.150e-8
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 118 EEARRILDRFH-------TWIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDVVAN 279
+EARRILDR + W V PRL AGRVQ VA VVER+RA +KF +AD W + A+
Sbjct: 152 QEARRILDRLYGYEVSPVLWKKVMPRLSAGRVQSVATRIVVERERARMKFVTADYWGITAH 212
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match:
A0A6J4HFQ2_9ACTN (DNA topoisomerase 1 n=1 Tax=uncultured Corynebacteriales bacterium TaxID=581187 RepID=A0A6J4HFQ2_9ACTN)
HSP 1 Score: 58.5 bits (140), Expect = 7.040e-8
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 118 EEARRILDRFH-------TWIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDV 270
+E RRILDR + W V P+L AGRVQ VA VVER+RA +KF+SA+ WD+
Sbjct: 172 QETRRILDRLYGYEVSPVLWKKVMPKLSAGRVQSVATRLVVERERARMKFRSAEYWDI 229
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match:
A0A835Z3T3_9STRA (DNA topoisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T3_9STRA)
HSP 1 Score: 58.5 bits (140), Expect = 7.170e-8
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 118 EEARRILDRF-----------HT-----WIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDVVANATA 288
+EARRI+D +T W +AP+L AGRVQ VALA +++R+ A LKFKSA+ WD+ AN TA
Sbjct: 499 QEARRIIDSILDRKYPVLLAGYTMSPLLWRKIAPKLSAGRVQSVALAMIIKREMARLKFKSAEYWDLNANVTA 571
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match:
A0A7W1E0A8_9ACTN (DNA topoisomerase 1 n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1E0A8_9ACTN)
HSP 1 Score: 58.2 bits (139), Expect = 9.570e-8
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 1
Query: 118 EEARRILDRFH-------TWIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDV 270
+EARRILDR + W V P+L AGRVQ VA +VER+RA ++F++AD WD+
Sbjct: 150 QEARRILDRLYGYEVSPVLWKKVMPKLSAGRVQSVATRILVERERARMRFRAADWWDI 207
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match:
A0A562V2E0_9ACTN (DNA topoisomerase 1 n=1 Tax=Stackebrandtia albiflava TaxID=406432 RepID=A0A562V2E0_9ACTN)
HSP 1 Score: 57.8 bits (138), Expect = 1.310e-7
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 118 EEARRILDRFH-------TWIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDVVAN 279
+EARRILDR + W V PRL AGRVQ VA VVER+RA ++F +AD W + A+
Sbjct: 152 QEARRILDRLYGYEVSPVLWKKVRPRLSAGRVQSVATRIVVERERARMRFVTADYWGITAH 212
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match:
D3Q5R3_STANL (DNA topoisomerase 1 n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / CIP 108903 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) TaxID=446470 RepID=D3Q5R3_STANL)
HSP 1 Score: 57.4 bits (137), Expect = 1.790e-7
Identity = 31/60 (51.67%), Postives = 38/60 (63.33%), Query Frame = 1
Query: 118 EEARRILDRFH-------TWIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDVVA 276
+EARRILDR + W V PRL AGRVQ VA VVER+RA ++F +AD W + A
Sbjct: 152 QEARRILDRLYGYEVSPVLWKKVMPRLSAGRVQSVATRIVVERERARMRFVTADYWGITA 211
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Match:
A0A518F0G3_9BACT (DNA topoisomerase 1 n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518F0G3_9BACT)
HSP 1 Score: 57.4 bits (137), Expect = 1.790e-7
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 1
Query: 118 EEARRILDRFH-------TWIFVAPRLRAGRVQGVALATVVERDRAHLKFKSADCWDVVANAT 285
+E+RRILDR + W + PRL AGRVQ VA +V+R+RA ++F+ A+ WD+VA T
Sbjct: 149 QESRRILDRLYGYEVSPILWRKIKPRLSAGRVQSVATKILVDRERARMRFREAEYWDLVAQFT 211
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10288.241.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 5.14e-31 / Id = 66.99 Expect = 4.77e-15 / Id = 69.23 Expect = 2.76e-8 / Id = 53.45 Expect = 5.15e-8 / Id = 52.46 Expect = 7.04e-8 / Id = 51.72 Expect = 7.17e-8 / Id = 46.58 Expect = 9.57e-8 / Id = 50.00 Expect = 1.31e-7 / Id = 50.82 Expect = 1.79e-7 / Id = 51.67 Expect = 1.79e-7 / Id = 46.03 Sequence D7G723_ECTSI D8LDU2_ECTSI A0A010YGE9_9ACTN A0A543AWD6_9ACTN A0A6J4HFQ2_9ACTN A0A835Z3T3_9STRA A0A7W1E0A8_9ACTN A0A562V2E0_9ACTN D3Q5R3_STANL A0A518F0G3_9BACT Pages
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10288.241.1
>prot_E-siliculosus-1a_F_contig10288.241.1 ID=prot_E-siliculosus-1a_F_contig10288.241.1|Name=mRNA_E-siliculosus-1a_F_contig10288.241.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=96bp
MEPNVPVKRAVFHDITQETLVKAFEVRREFFNLGQAQEKRPAASLTAFIP back to top mRNA from alignment at E-siliculosus-1a_F_contig10288:717..2068+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10288.241.1 ID=mRNA_E-siliculosus-1a_F_contig10288.241.1|Name=mRNA_E-siliculosus-1a_F_contig10288.241.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1352bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10288:717..2068+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)GGTC ATGGAACCGAACGTTCCGGTCAAGAGGGCGGTGTTCCACGACATCA
CCCAGGAGACACTCGTCAAGGCGTTCGAGGTCAGACGGGAATTCTTT GTT
ATGTTGGTGGTGGTTTGTTGGAGTGTGTGTTTGTTGTTGTTGTTATCGAT
GGCGTTGATGTCGTTGTCGTTTTGGTGCCTGGAAGATCGTTTTTCGACAA
CTACATGTAGTCGCACGGTCATGAGTCAGACTTTATGTTGGCAACGACGG
GGACAACGGGCCCTGCACCAACGCCGGTGTACTCGACGCAACCGACCGTC
CTGCAACAGCCCTCCACCATGTTGTCCGCAGCCACATGAGCGTCAGGATT
CCATGTTTCCATGTTTAGATCCTCTCTGACGCCCGCGCACCCTTCTCCGA
CGACAGCAACGGCGACAACGACGTAGTTGGTATTCAACCACCAAGCCTTC
ACCGGATCAATCCCCCTTCCACTCCCTCCCATGTACCATGTCGTCATTGG
TGCGAGTTTCGATGATCACGCGACTATTGAGGCAAGAAGCAGATGAGGTA
TCCCCGGGCCCCCCTCTCTTGTCTCTGGCGGTGCCGTGCATTTTCCTCTC
TTTTTTTTGTCTTTTCTTTATCATTCTTCAGGAACCAGGACAGATTGACG
AGAACCTCGGTCAGGCCCAGGAGAAGAGGCCCGCCGCATCCTTGACCGCT
TTCATACCTGG GTAAGAGAGGGAAGGGGGGAAAGGAAGTCATATGGACAA
TGGAGCATTCGCCGGGCTAGTGGGTAGAGGAGTCTGGTACGTTTGCGTCC
GGGCTAGTTGATGGGGAACCTTGGAAGTCTGGTGGTGTTCCATGGATTTC
ATCGACGTTGCAGTTGAGAAAGGGGACTGCTGATTCTCCTCCCGGTGTTG
CCCGTGTTGTTGGTTGTTTTTCGTTCTATGTTGGAAAATAGCTGATACGG
TTCCCATTGGAATCGCGCAAGTGGCCCGCAGTATCCCCCCCCCCCCCCCA
TCTGGTCTGGTCACAGTAAACGCAAGGATGATCACCAGCTTCTGAATCAT
CCTTGTGAAACCTATAGCCAGGGCCGGGCGAGAACCCGGCATGTGGCTCC
GTCCCGGCATGCGAAGTCTATCGTCTAACGAACTACGGCGTGCGTTCACA
CGAGTCCCCCCCCCCCTGCCCGTGCGTGCTGGTTCACACAGCTTCACCCT
GACCCCGGTTATCTAGATCTTCGTCGCTCCGAGGCTTCGCGCCGGACGGG
TGCAAGGTGTGGCGCTTGCGACGGTGGTCGAGCGCGACCGCGCGCACCTC
AAGTTCAAGTCCGCGGATTGCTGGGACGTGGTCGCCAACGCTACCGCCGC
GG back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10288:717..2068+
>mRNA_E-siliculosus-1a_F_contig10288.241.1 ID=mRNA_E-siliculosus-1a_F_contig10288.241.1|Name=mRNA_E-siliculosus-1a_F_contig10288.241.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=576bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10288:717..2068+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top