mRNA_E-siliculosus-1a_F_contig10244.218.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10244.218.1
Unique NamemRNA_E-siliculosus-1a_F_contig10244.218.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10244.218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10244contigE-siliculosus-1a_F_contig10244:540..1440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size318
Model size320
Exons3
Hectar predicted targeting categorysignal anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10244.218.1prot_E-siliculosus-1a_F_contig10244.218.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10244 540..1440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927528.2392714-CDS-E-siliculosus-1a_F_contig10244:539..6121622927528.2392714-CDS-E-siliculosus-1a_F_contig10244:539..612Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10244 540..612 -
1696318569.2229452-CDS-E-siliculosus-1a_F_contig10244:539..6121696318569.2229452-CDS-E-siliculosus-1a_F_contig10244:539..612Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10244 540..612 -
1622927528.254526-CDS-E-siliculosus-1a_F_contig10244:856..10171622927528.254526-CDS-E-siliculosus-1a_F_contig10244:856..1017Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10244 857..1017 -
1696318569.2345252-CDS-E-siliculosus-1a_F_contig10244:856..10171696318569.2345252-CDS-E-siliculosus-1a_F_contig10244:856..1017Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10244 857..1017 -
1622927528.2669108-CDS-E-siliculosus-1a_F_contig10244:1356..14401622927528.2669108-CDS-E-siliculosus-1a_F_contig10244:1356..1440Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10244 1357..1440 -
1696318569.2455173-CDS-E-siliculosus-1a_F_contig10244:1356..14401696318569.2455173-CDS-E-siliculosus-1a_F_contig10244:1356..1440Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10244 1357..1440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10244.218.1

>prot_E-siliculosus-1a_F_contig10244.218.1 ID=prot_E-siliculosus-1a_F_contig10244.218.1|Name=mRNA_E-siliculosus-1a_F_contig10244.218.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=106bp
CYLRCCNRLCFSEMDRNQWVPDPNRTKQILLLARLPLLLPLPLPLALLHP
LLQLPLLLTLLQLPTPRWIETSGYPIQVAPNSKMKKPGGIGSSFRPKSGR
RKRPMP
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mRNA from alignment at E-siliculosus-1a_F_contig10244:540..1440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10244.218.1 ID=mRNA_E-siliculosus-1a_F_contig10244.218.1|Name=mRNA_E-siliculosus-1a_F_contig10244.218.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=901bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10244:540..1440- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTTATCTGCGCTGCTGTAATCGGCTGTGCTTCAGCGAGATGGATCGAAA
CCAGTGGGTACCCGATCCAAATCGCACCAAACAGGTGCGGCTACGTCGAT
ACTACACTGGTTTCCAGGGCACGCAGTAGTAATGCCAAGGCTGGTCAAGG
AGGATACAATGAGACAGCAGCCTTACTTTGGCAGGCTAGGTTCTTCATTC
ACATACAAGGCTTGGTAAACAAATCAGCGACGTGGACGCGAATTGGGCGT
GCACACAGTTGCGCAGCGTTTCGGAATGACCATTCTCATCACTCCTGTCG
CGCCTCATGTCTGTAGTTGCAGTCGCGCTGCTAAACATGAAGTACAAAAC
CGTCGAAACTAATTTGAGATGCTTTTCTGCCGTTTTCTACCGCTTCCCGC
CGCTGGCACGGCTCGTGTCGCAGATACTGCTATTGGCACGGCTGCCACTG
CTGCTACCGCTACCGCTTCCTCTGGCGCTCCTGCACCCGCTGCTACAGCT
ACCCCTGCTACTGACACTGCTACAACTACCGACGCCGAGATGGATCGAAA
CCAGTGGGTACCCGATCCAAGTCGCACCCAACAGGTGTGGCTATGTCGAT
CGATACTACACATAGTTTGCAGGGCACGCAGCAGTAGTACCAGGGCTGGT
CATGGAGGGTACAGAGAGACAGCAGCCTTACTATTACGTGGCTAGGTTCT
TCGCGCGTATACAAGGCTAGGTAAACCAAATCAACGACGTAGACGCGAAT
TGGGCGTGCACGCGTTTGCGCAGCGTTTCGGAATGACCACTCGTATCACT
CCTGTCGTGCCTCATGTCTACAAAACAGCAAAATGAAAAAACCCGGAGGT
ATTGGATCAAGCTTCAGGCCAAAAAGCGGAAGAAGAAAGCGGCCTATGCC
G
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10244:540..1440-

>mRNA_E-siliculosus-1a_F_contig10244.218.1 ID=mRNA_E-siliculosus-1a_F_contig10244.218.1|Name=mRNA_E-siliculosus-1a_F_contig10244.218.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10244:540..1440- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTTATCTGCGCTGCTGTAATCGGCTGTGCTTCAGCGAGATGGATCGAAA
CCAGTGGGTACCCGATCCAAATCGCACCAAACAGTGTTATCTGCGCTGCT
GTAATCGGCTGTGCTTCAGCGAGATGGATCGAAACCAGTGGGTACCCGAT
CCAAATCGCACCAAACAGATACTGCTATTGGCACGGCTGCCACTGCTGCT
ACCGCTACCGCTTCCTCTGGCGCTCCTGCACCCGCTGCTACAGCTACCCC
TGCTACTGACACTGCTACAACTACCGACGCCGAGATGGATCGAAACCAGT
GGGTACCCGATCCAAGTCGCACCCAACAGATACTGCTATTGGCACGGCTG
CCACTGCTGCTACCGCTACCGCTTCCTCTGGCGCTCCTGCACCCGCTGCT
ACAGCTACCCCTGCTACTGACACTGCTACAACTACCGACGCCGAGATGGA
TCGAAACCAGTGGGTACCCGATCCAAGTCGCACCCAACAGCAAAATGAAA
AAACCCGGAGGTATTGGATCAAGCTTCAGGCCAAAAAGCGGAAGAAGAAA
GCGGCCTATGCCGCAAAATGAAAAAACCCGGAGGTATTGGATCAAGCTTC
AGGCCAAAAAGCGGAAGAAGAAAGCGGCCTATGCCG
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