mRNA_E-siliculosus-1a_F_contig10192.182.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10192.182.1
Unique NamemRNA_E-siliculosus-1a_F_contig10192.182.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10192.182.1 vs. uniprot
Match: D7G017_ECTSI (Tub domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G017_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 3.240e-21
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1
Query:    4 EGSDIITFETLSPSWNEVLHAWTLNFNGRVKIPSKKNFLVAPEK 135
            EGSDIITFETLSPSWNEVLHAWTLNFNGRVKIPSKKNFLV+PEK
Sbjct:  456 EGSDIITFETLSPSWNEVLHAWTLNFNGRVKIPSKKNFLVSPEK 499          
BLAST of mRNA_E-siliculosus-1a_F_contig10192.182.1 vs. uniprot
Match: A0A8K1C842_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C842_PYTOL)

HSP 1 Score: 68.6 bits (166), Expect = 2.940e-12
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1
Query:   13 DIITFETLSPSWNEVLHAWTLNFNGRVKIPSKKNFLVAPEK 135
            D++ FET  PSWNE L AWTLNFNGRVK+PSKKNFL+  E+
Sbjct:  549 DLLVFETRKPSWNEELGAWTLNFNGRVKLPSKKNFLIVAEE 589          
BLAST of mRNA_E-siliculosus-1a_F_contig10192.182.1 vs. uniprot
Match: A0A2D4C602_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C602_PYTIN)

HSP 1 Score: 67.4 bits (163), Expect = 7.460e-12
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 1
Query:   13 DIITFETLSPSWNEVLHAWTLNFNGRVKIPSKKNFLVAPE 132
            D++TFET  PSWNE L AWTLNF GRVK+ SKKNFL+ PE
Sbjct:  391 DLLTFETKKPSWNEELGAWTLNFQGRVKMASKKNFLIVPE 430          
BLAST of mRNA_E-siliculosus-1a_F_contig10192.182.1 vs. uniprot
Match: A0A836CGA0_9STRA (Tubby C-terminal-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.480e-12
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1
Query:   10 SDIITFETLSPSWNEVLHAWTLNFNGRVKIPSKKNFLVAPEK 135
            SDI+  ET  PSWN  L AW LNFNGRV+IPSKKNFL APE+
Sbjct:  378 SDIMVLETKRPSWNPALEAWVLNFNGRVRIPSKKNFLGAPER 419          
BLAST of mRNA_E-siliculosus-1a_F_contig10192.182.1 vs. uniprot
Match: A0A5D6XV38_9STRA (PDZ domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XV38_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.400e-11
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 1
Query:   13 DIITFETLSPSWNEVLHAWTLNFNGRVKIPSKKNFLVAPEKVSS 144
            D++TFET  P+WN+ L AWTLNF+GRVK+ SKKNFL+ PE+ S+
Sbjct:  653 DLLTFETKKPAWNDELGAWTLNFHGRVKLASKKNFLLVPEQGSA 696          
BLAST of mRNA_E-siliculosus-1a_F_contig10192.182.1 vs. uniprot
Match: K3X577_GLOUD (PDZ domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X577_GLOUD)

HSP 1 Score: 65.5 bits (158), Expect = 3.580e-11
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 1
Query:   13 DIITFETLSPSWNEVLHAWTLNFNGRVKIPSKKNFLVAPEK 135
            D++TFET  P+WN+ L AWTLNF+GRVK+ SKKNFL+ PE+
Sbjct:  665 DLLTFETKKPAWNDELGAWTLNFHGRVKLASKKNFLLVPEQ 705          
BLAST of mRNA_E-siliculosus-1a_F_contig10192.182.1 vs. uniprot
Match: A0A2R5GUZ5_9STRA (Tubby protein-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUZ5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.250e-10
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 1
Query:    1 QEGSDIITFETLSPSWNEVLHAWTLNFNGRVKIPSKKNFLVAPE 132
            +E S+++ F+TL P WNE L AWTLNFN RVK+ SKKNF++ P+
Sbjct:  575 EELSELLEFDTLKPQWNEELQAWTLNFNSRVKMASKKNFMLVPQ 618          
BLAST of mRNA_E-siliculosus-1a_F_contig10192.182.1 vs. uniprot
Match: A0A662YJH7_9STRA (PDZ domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YJH7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.250e-10
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 1
Query:   13 DIITFETLSPSWNEVLHAWTLNFNGRVKIPSKKNFLV 123
            D++TFET  PSWNE L AWTLNF GRVK+ SKKNFL+
Sbjct:  637 DLLTFETKKPSWNETLSAWTLNFQGRVKVASKKNFLL 673          
BLAST of mRNA_E-siliculosus-1a_F_contig10192.182.1 vs. uniprot
Match: A0A6V1UG96_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UG96_HETAK)

HSP 1 Score: 63.5 bits (153), Expect = 1.690e-10
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:   13 DIITFETLSPSWNEVLHAWTLNFNGRVKIPSKKNFLVAPE 132
            D++ FET  P WNE + AWTLNFNGRVKIPSKKNF +  E
Sbjct:  330 DLMIFETKRPVWNEQIQAWTLNFNGRVKIPSKKNFFIQAE 369          
BLAST of mRNA_E-siliculosus-1a_F_contig10192.182.1 vs. uniprot
Match: A0A7S1TR98_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TR98_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.970e-10
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 1
Query:   13 DIITFETLSPSWNEVLHAWTLNFNGRVKIPSKKNFLVAPEK 135
            D++  ET  P+W+E L AWTLNF GRVK  SKKNFL+APEK
Sbjct:  613 DLLVLETKRPAWSEELKAWTLNFEGRVKRASKKNFLIAPEK 653          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10192.182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G017_ECTSI3.240e-2197.73Tub domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A8K1C842_PYTOL2.940e-1270.73Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C602_PYTIN7.460e-1272.50Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A836CGA0_9STRA7.480e-1271.43Tubby C-terminal-like domain-containing protein (F... [more]
A0A5D6XV38_9STRA1.400e-1163.64PDZ domain-containing protein n=1 Tax=Pythium bras... [more]
K3X577_GLOUD3.580e-1165.85PDZ domain-containing protein n=1 Tax=Globisporang... [more]
A0A2R5GUZ5_9STRA1.250e-1059.09Tubby protein-like n=1 Tax=Hondaea fermentalgiana ... [more]
A0A662YJH7_9STRA1.250e-1072.97PDZ domain-containing protein n=2 Tax=Nothophytoph... [more]
A0A6V1UG96_HETAK1.690e-1067.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1TR98_9STRA5.970e-1065.85Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10192contigE-siliculosus-1a_F_contig10192:1927..2073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size147
Model size147
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG2502@1,KOG2502@2759
EggNOG free text desc.phosphatidylinositol binding
KEGG koko:K19600
Seed eggNOG ortholog2880.D7G017
Seed ortholog evalue2.1e-17
Seed ortholog score94.0
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927520.99516-CDS-E-siliculosus-1a_F_contig10192:1926..20731622927520.99516-CDS-E-siliculosus-1a_F_contig10192:1926..2073Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10192 1927..2073 +
1696318565.984251-CDS-E-siliculosus-1a_F_contig10192:1926..20731696318565.984251-CDS-E-siliculosus-1a_F_contig10192:1926..2073Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10192 1927..2073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10192.182.1prot_E-siliculosus-1a_F_contig10192.182.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10192 1927..2073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10192.182.1

>prot_E-siliculosus-1a_F_contig10192.182.1 ID=prot_E-siliculosus-1a_F_contig10192.182.1|Name=mRNA_E-siliculosus-1a_F_contig10192.182.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=49bp
QEGSDIITFETLSPSWNEVLHAWTLNFNGRVKIPSKKNFLVAPEKVSS*
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mRNA from alignment at E-siliculosus-1a_F_contig10192:1927..2073+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10192.182.1 ID=mRNA_E-siliculosus-1a_F_contig10192.182.1|Name=mRNA_E-siliculosus-1a_F_contig10192.182.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=147bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10192:1927..2073+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGAGGGAAGCGATATCATCACTTTCGAGACCCTCAGCCCGTCTTGGAA CGAGGTTCTGCACGCCTGGACGCTCAACTTCAACGGTCGCGTCAAGATCC CGTCTAAGAAGAACTTCCTCGTTGCACCAGAAAAGGTATCATCCTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10192:1927..2073+

>mRNA_E-siliculosus-1a_F_contig10192.182.1 ID=mRNA_E-siliculosus-1a_F_contig10192.182.1|Name=mRNA_E-siliculosus-1a_F_contig10192.182.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=294bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10192:1927..2073+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGAGGGAAGCGATATCATCACTTTCGAGACCCTCAGCCCGTCTTGGAA
CGAGGTTCTGCACGCCTGGACGCTCAACTTCAACGGTCGCGTCAAGATCC
CGTCTAAGAAGAACTTCCTCGTTGCACCAGAAAAGGTATCATCCTAACAG
GAGGGAAGCGATATCATCACTTTCGAGACCCTCAGCCCGTCTTGGAACGA
GGTTCTGCACGCCTGGACGCTCAACTTCAACGGTCGCGTCAAGATCCCGT
CTAAGAAGAACTTCCTCGTTGCACCAGAAAAGGTATCATCCTAA
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