mRNA_E-siliculosus-1a_F_contig1016.164.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1016.164.1
Unique NamemRNA_E-siliculosus-1a_F_contig1016.164.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: A0A6H5JKJ0_9PHAE (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ0_9PHAE)

HSP 1 Score: 269 bits (687), Expect = 6.220e-84
Identity = 215/254 (84.65%), Postives = 217/254 (85.43%), Query Frame = 3 
Query:  165 MADAPKKGSGRVRKPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG------QQPQVMVYPQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMGLPGMGFQHPIPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 908
            MADAPKKGSGRVRKPQQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                          QQ QVMVYPQHXXXXXXXXXXXXXXXXXXXXXX         RMGLPGMGFQHP+PXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAE+RQDAKLDWLFQDLS
Sbjct:    1 MADAPKKGSGRVRKPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVVGGAGMQNPPPRTHPPNPYPPGQQQQQVMVYPQHXXXXXXXXXXXXXXXXXXXXXX---------RMGLPGMGFQHPLPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEDRQDAKLDWLFQDLS 245
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: D8LL00_ECTSI (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL00_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 1.050e-80
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 3 
Query:  495 MGLPGMGFQHPIPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 908
            MGLPGMGFQHP+PXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS
Sbjct:    1 MGLPGMGFQHPVPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS 138
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: A0A835ZG91_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG91_9STRA)

HSP 1 Score: 144 bits (363), Expect = 2.460e-36
Identity = 78/131 (59.54%), Postives = 96/131 (73.28%), Query Frame = 3 
Query:  525 PIPXXXXXXAFFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPR-----LRRVSADEIIEAQQEASAEERQDAKLDWLFQD 902
            P P      +FFPG+ASL EQLDK VMVVLRDGRHLVG+MRSYDQFSNIVLEDTHERHFV  ++GDI LGLY+VRGD++VL+GE+              L+RV+ADEI++AQQE+  +     K++W F D
Sbjct:  107 PXPPVIAPPSFFPGAASLHEQLDKVVMVVLRDGRHLVGLMRSYDQFSNIVLEDTHERHFVGALYGDIPLGLYIVRGDSVVLLGEVAAEXXXXXXXXXALLKRVTADEILQAQQESDVD---PFKVEWDFGD 234
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: A0A7S2XVC4_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVC4_9STRA)

HSP 1 Score: 133 bits (335), Expect = 8.350e-34
Identity = 69/115 (60.00%), Postives = 88/115 (76.52%), Query Frame = 3 
Query:  555 FFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRL-RRVSADEIIEAQQEASAEERQDAKLDWLF 896
            FF G  SL EQLDK+++VVLRDGRHLVGV+RS+DQFSN+V+E+THERH V  IFGDI LGLY+VRGD +VL+GE+DE +E + +  RRVSA+EI+ AQ+          K+ W F
Sbjct:    4 FFAGGMSLVEQLDKKILVVLRDGRHLVGVLRSFDQFSNMVMENTHERHVVEGIFGDIPLGLYIVRGDNVVLLGEVDEEKESSSQHPRRVSAEEILHAQRNTE----DKTKVAWDF 114
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: K3WSU0_GLOUD (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSU0_GLOUD)

HSP 1 Score: 132 bits (332), Expect = 2.530e-33
Identity = 64/115 (55.65%), Postives = 88/115 (76.52%), Query Frame = 3 
Query:  555 FFPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETRE-ETPRLRRVSADEIIEAQQEASAEERQDAKLDWLF 896
            +FPGS SL EQLDK+++VVLRDGRHLVG +RS+DQFSNI+LEDT+ERH    +F DI LGL ++RGD +VL+GELDE +E + P ++R S +EI+EA++  +A+     +  W F
Sbjct:    4 YFPGSISLIEQLDKKILVVLRDGRHLVGYIRSFDQFSNIILEDTYERHVADGMFCDIELGLNIIRGDNIVLLGELDEDKERDQPHMKRASIEEILEAEERLNAKGAASVREQWDF 118
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: A0A6V1WH12_HETAK (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WH12_HETAK)

HSP 1 Score: 126 bits (316), Expect = 4.230e-31
Identity = 63/105 (60.00%), Postives = 82/105 (78.10%), Query Frame = 3 
Query:  561 PGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQD 875
            PG   L EQLDKR+++VL+DGRHL+G +RS+DQFSN+V+E+T ERH V   +GDI LGLYLVRGDA+VL+GE+D+   E   LRRVSADEI+E ++E  +  R D
Sbjct:    7 PGIMGLVEQLDKRILIVLQDGRHLIGTLRSFDQFSNVVIENTFERHVVDGCYGDIPLGLYLVRGDAVVLLGEVDDAGHEGI-LRRVSADEILELEREKESRARDD 110
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: H3GH42_PHYRM (U6 snRNA-associated Sm-like protein LSm1 n=43 Tax=Peronosporaceae TaxID=4777 RepID=H3GH42_PHYRM)

HSP 1 Score: 124 bits (311), Expect = 2.370e-30
Identity = 58/115 (50.43%), Postives = 86/115 (74.78%), Query Frame = 3 
Query:  558 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETRE-ETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQ 899
            FPG++SL +QLDK+V++VLRDGRHLVG +RS+DQ+SNI+LEDT ERH    +F DI LGL ++RGD +VL+GELD  +E + P ++RV  +E++EA+++ +       +  W F+
Sbjct:    5 FPGNSSLIQQLDKQVLMVLRDGRHLVGYLRSFDQYSNIILEDTFERHVAGGLFCDIELGLNIIRGDNIVLLGELDSEKERDQPHMKRVELEEVLEAEEQLNEAGNTSVRQQWDFE 119
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: A0A7S2CG66_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG66_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.360e-29
Identity = 58/114 (50.88%), Postives = 86/114 (75.44%), Query Frame = 3 
Query:  561 PGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQD 902
            PG+ASL +QLDKR+++VLRDGRHLVG++RS+DQFSN+VLEDTHERH    +  D++LGL++VRGD +VL+GELD  +E +  L     D ++EA++ ++       K++W F++
Sbjct:   16 PGAASLVDQLDKRILIVLRDGRHLVGILRSFDQFSNMVLEDTHERHVANGLRSDMALGLFIVRGDNIVLLGELDPEKEASSGLIDAEPDVVLEAERNSAF-----TKVEWDFEN 124
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: A0A0P1A9M0_PLAHL (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9M0_PLAHL)

HSP 1 Score: 121 bits (304), Expect = 2.530e-29
Identity = 59/113 (52.21%), Postives = 85/113 (75.22%), Query Frame = 3 
Query:  558 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETRE-ETPRLRRVSADEIIEAQQEASAEERQDAKLDWL 893
            FPG++SL +QLDK+V++VLRDGRHLVG +RS+DQFSNI+LEDT+ERH    +F DI LGL ++RG  +VL+GELD  +E + P ++RV  +E++EA++  + E      L +L
Sbjct:    5 FPGNSSLIQQLDKQVLMVLRDGRHLVGNLRSFDQFSNIILEDTYERHVAGGLFCDIELGLNIIRGGNIVLLGELDSDKERDQPHMKRVKLEEVLEAEERLNEEGNTSLSLSFL 117
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Match: W4GB80_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GB80_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.600e-29
Identity = 63/114 (55.26%), Postives = 85/114 (74.56%), Query Frame = 3 
Query:  558 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETRE-ETPRLRRVSADEIIEAQQEASAEERQDAKLDWLF 896
            FPG +SL EQLDK+++VVLRDGRHLVG++RS+DQFSNIVLE T ERH V + + DI LGLY++RG+ +VLMGELD+ +E E   L R SA+E++ A+ E + +     +  W F
Sbjct:    7 FPGVSSLVEQLDKQLLVVLRDGRHLVGIIRSFDQFSNIVLEGTCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAEDVNLTRKSAEEVLTAEMEQNEQGLPTVRDAWNF 120
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1016.164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKJ0_9PHAE6.220e-8484.65U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
D8LL00_ECTSI1.050e-8099.28U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
A0A835ZG91_9STRA2.460e-3659.54U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=T... [more]
A0A7S2XVC4_9STRA8.350e-3460.00U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=F... [more]
K3WSU0_GLOUD2.530e-3355.65U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=G... [more]
A0A6V1WH12_HETAK4.230e-3160.00U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=H... [more]
H3GH42_PHYRM2.370e-3050.43U6 snRNA-associated Sm-like protein LSm1 n=43 Tax=... [more]
A0A7S2CG66_9STRA1.360e-2950.88U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=D... [more]
A0A0P1A9M0_PLAHL2.530e-2952.21U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=P... [more]
W4GB80_9STRA2.600e-2955.26U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1016contigE-siliculosus-1a_F_contig1016:31162..34582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size747
Model size1538
Exons4
Ec32 orthologEc-11_006170.1
Ec32 ortholog descriptionSm-like protein LSm1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko03009,ko03019
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGsKOG1782@1,KOG1782@2759
EggNOG free text desc.deadenylation-dependent decapping of nuclear-transcribed mRNA
GOsGO:0000288,GO:0000290,GO:0000291,GO:0000339,GO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005845,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009414,GO:0009415,GO:0009628,GO:0009631,GO:0009651,GO:0009892,GO:0009987,GO:0010035,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010629,GO:0010721,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019827,GO:0022008,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030424,GO:0030425,GO:0032501,GO:0032502,GO:0032991,GO:0033962,GO:0034518,GO:0034622,GO:0034641,GO:0034655,GO:0035770,GO:0036002,GO:0036464,GO:0036477,GO:0042221,GO:0042538,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044297,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0065003,GO:0065007,GO:0070925,GO:0071044,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097447,GO:0097458,GO:0098727,GO:0120025,GO:0120038,GO:0120114,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1990124,GO:1990726,GO:1990904,GO:2000026
KEGG ModuleM00146,M00397
KEGG Pathwayko00190,ko01100,ko03018,ko04714,ko04723,ko04913,ko04925,ko04927,ko04932,ko04934,ko04979,ko05010,ko05012,ko05016,map00190,map01100,map03018,map04714,map04723,map04913,map04925,map04927,map04932,map04934,map04979,map05010,map05012,map05016
KEGG TC3.D.1.6
KEGG koko:K03952,ko:K12620,ko:K14794,ko:K16931
Preferred nameLSM1
Seed eggNOG ortholog2880.D8LL00
Seed ortholog evalue3e-67
Seed ortholog score261.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1016.164.1prot_E-siliculosus-1a_F_contig1016.164.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1016 31789..33635 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927518.1593163-UTR-E-siliculosus-1a_F_contig1016:31161..317881622927518.1593163-UTR-E-siliculosus-1a_F_contig1016:31161..31788Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1016 31162..31788 -
1696318564.51175-UTR-E-siliculosus-1a_F_contig1016:31161..317881696318564.51175-UTR-E-siliculosus-1a_F_contig1016:31161..31788Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1016 31162..31788 -
1622927518.224213-UTR-E-siliculosus-1a_F_contig1016:33635..337581622927518.224213-UTR-E-siliculosus-1a_F_contig1016:33635..33758Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1016 33636..33758 -
1696318564.5562608-UTR-E-siliculosus-1a_F_contig1016:33635..337581696318564.5562608-UTR-E-siliculosus-1a_F_contig1016:33635..33758Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1016 33636..33758 -
1622927518.2368076-UTR-E-siliculosus-1a_F_contig1016:34541..345821622927518.2368076-UTR-E-siliculosus-1a_F_contig1016:34541..34582Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1016 34542..34582 -
1696318564.5732534-UTR-E-siliculosus-1a_F_contig1016:34541..345821696318564.5732534-UTR-E-siliculosus-1a_F_contig1016:34541..34582Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1016 34542..34582 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927518.17348-CDS-E-siliculosus-1a_F_contig1016:31788..319911622927518.17348-CDS-E-siliculosus-1a_F_contig1016:31788..31991Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1016 31789..31991 -
1696318564.5250301-CDS-E-siliculosus-1a_F_contig1016:31788..319911696318564.5250301-CDS-E-siliculosus-1a_F_contig1016:31788..31991Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1016 31789..31991 -
1622927518.195985-CDS-E-siliculosus-1a_F_contig1016:32582..326851622927518.195985-CDS-E-siliculosus-1a_F_contig1016:32582..32685Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1016 32583..32685 -
1696318564.534251-CDS-E-siliculosus-1a_F_contig1016:32582..326851696318564.534251-CDS-E-siliculosus-1a_F_contig1016:32582..32685Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1016 32583..32685 -
1622927518.2100945-CDS-E-siliculosus-1a_F_contig1016:33194..336351622927518.2100945-CDS-E-siliculosus-1a_F_contig1016:33194..33635Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1016 33195..33635 -
1696318564.5431612-CDS-E-siliculosus-1a_F_contig1016:33194..336351696318564.5431612-CDS-E-siliculosus-1a_F_contig1016:33194..33635Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1016 33195..33635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1016.164.1

>prot_E-siliculosus-1a_F_contig1016.164.1 ID=prot_E-siliculosus-1a_F_contig1016.164.1|Name=mRNA_E-siliculosus-1a_F_contig1016.164.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=249bp
MADAPKKGSGRVRKPQQQQQQQQQQRPQAPQGGAAGAPRGARAAVVGGAG
MQPPPPRTHPPNPPPPGQQPQVMVYPQHPQHHLQQHQQHQQHQQHQQHPQ
HPQHPQHPQRMGLPGMGFQHPIPPPPPPPAFFPGSASLFEQLDKRVMVVL
RDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALV
LMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLFQDLS*
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mRNA from alignment at E-siliculosus-1a_F_contig1016:31162..34582-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1016.164.1 ID=mRNA_E-siliculosus-1a_F_contig1016.164.1|Name=mRNA_E-siliculosus-1a_F_contig1016.164.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3421bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1016:31162..34582- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGCTGCCTTCTGGTCGTCCGCCGTGTTGTAGAAGCTATCAGGTGCGTTAA
CGTGTCGTCGTAGCATGGCATTGGTGTATTATTGTGCTCGTAGGTGAAGC
AGAGGGGTGACGTCGGCACACCCAAAATCTTCTCCTAATCCCTGTTGAGC
GTTTTGGAAAACAGCTCTTGAAAAGGTACGAAGCGGTGTGTGCTGCCTCG
CTGCTCTCCGAGATATTCATATTGTTGTCAAGCATGTTATGTATACCAAC
ACGTGGGGTAGCTGTTTCTGTTGCTTGTTACTGACTGAGGCATTTTCCGG
TCGGTGCCACTGCGTTACTGCTTCACAAGCACATGGTCGTTATCTGCCCG
ATGACATCATATGGACGTGTTCGTCTCTCGCTGCGGTTCAGCTGATGCCG
CAGCGACACCGGTCGACTGCACGTGTTGCACACTTACGACTAACTGCTGT
AGGAACACAACGGGATCGTACCTCCCGCGCTGCTGATGTGATGATGACGC
TGCAGTTACAACAGTAGATATCAAGTACCGCTGTAAAAACAAACGGCTGT
CTGTGGCAAAATAATCCTCTACTCCAGCCGGTGTCCCTCCACTCACTGAA
GAGACTTCAGCACATCCCTTTCGACTACTGCTCTGTTATATCTCGAACAG
GTAGTCTTTCTGTGTTCATGTATATTTCCAATAGTCCTCTTGTGTCGGCG
AACGGTGTACGGACTGCAATACGCATACACCCTGCTTTCCCGAGAGAGCG
AGGTACGCTGAACCCATCGTGATGTCGCTCCTCAAAACGTGTCGTGCCTT
GCAACCATGCCGAATCTCTCCCAGAGCGAAGCAGCTGTCGAACAAGTGAC
CAACAGCAGGGGCGCGGCTTTTGGCGGTGGCGCGGGCTGGCGAGGAGGAC
ATATTAGTCCACCACATCGCAATTTAGTCGGCACGACTTCCTTAGCCATG
GCGGATGCTCCTAAGAAAGGCTCCGGCAGGGTTCGAAAGCCACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCGCCCACAAGCACCACAAGGGGGAGCGG
CCGGCGCACCGAGAGGGGCGAGGGCCGCGGTAGTTGGAGGGGCAGGGATG
CAACCCCCCCCTCCTAGAACACACCCACCTAATCCCCCCCCCCCCGGGCA
GCAGCCGCAGGTAATGGTGTACCCCCAACACCCCCAGCACCATCTACAAC
AACACCAACAACACCAACAACACCAACAACACCAACAGCATCCGCAGCAT
CCCCAGCATCCCCAGCACCCGCAACGGATGGGGCTCCCTGGGATGGGCTT
TCAGCACCCCATACCGCCCCCGCCACCACCCCCGGCGTTTTTTCCTGGGT
CGGCGAGTCTGTTCGAGCAGCTCGACAAGCGGGTCATGGTGGGTACTTGA
TACGGGGAGACAGGGGTAGAGCTGCATGTGTAAGTGTCCTCACCTGTTGT
AGAGCGATATGGTCCTTTCAACTGCAGTCAAGCCTTCTCAGTCCTGGCAT
TGAGCCTCGATTGTTTCATGGTCCACGCACCTCCCGCTGCACTACTGTTC
TACTGTACAGGAGGGTGTGTTCCCTTTGTTGTCTACGAGCCCGCGGTATA
GCAGCAGGCGAAGTGGTGCTGCTGTTATGCCCAGCCGCAACAATGCCGCA
AAAGTCTGGTAGATCACGCTTGCAACCGTTGCCGACGAGGATGTTCAAGA
ACTCCCTCCCGAACGGAGTTGCATTGACGACGCGATGCTGTTTGTGCGTA
CCTCAGGGGGGGGGATTCTTTGTTCATGCGTTGGACGTTTGTGTTCGTTT
TAAGGATACGGCGTTGATGAGGATGAAAGTGATGGATGGCGGCTTGTAGA
TAGTTAAACCCAACAATAATCACAACACCCCGCACCAACGACAACAGGTC
GTTCTTCGCGACGGTAGGCACCTGGTGGGAGTTATGAGAAGCTACGACCA
GTTTTCCAACATCGTGCTGGAAGACACGCACGAACGACACTTTGTGAGAG
GTGAGCTTCAGCAAACTCTTACACAAAGCCATGTGTCTGGTCGGAAATGT
TCATCCGCTCGACGTTGTTCTCCCCCACCAATGTGTTTTGCGTGACACGT
CCTTCGTGCTCGCGTGTACTCGAAAGCTCGTGCTGCGTTGTCATCAGCCG
AGACTATTCCGCTGTTTTCACGAGTGACCCGGGCGGACCCCGTAATTAAT
TCATGATCCTGACCCTTTGGAAATCACGTACCATGGTATTTTATGTATCT
TGAGAAGCTGTGCGCAGAAGAATGGTTGACTGCAAGAGATGTTCTTTGGA
TCGCTTCGAGCATTCTCCAACATAAGTTGCTCAGTCAATTTCAACAGCAG
TCGTCCCGTTTAGAGACACCGTCATGGCAATCCGGACCAGGAGTCCCGGT
CAGAGTATTTTTGTTTTGAGCCGAAGTTTTTCACCGGGGAACATTCATCG
GTATTGCAGCACGTATCCAAACGGGTAGGCGCGATGCACTTTAGTTCGAG
CGTTGGTTTTGCCGTCTCGTCCGAAATGTCCTCGTACAGCTGCATGCGCC
AACGCTCCCCACTCGTACCCGCCACCCGGTTGGTGCCGCAGATATTTTCG
GGGATATATCGCTTGGGCTTTACCTTGTCCGAGGGGATGCTCTGGTGTTG
ATGGGGGAACTCGACGAGACCCGGGAGGAAACTCCCAGGCTGAGAAGGGT
CTCCGCGGACGAGATAATCGAGGCGCAGCAGGAGGCATCGGCAGAGGAGC
GCCAAGACGCGAAGCTAGACTGGTTGTTCCAGGACTTGTCGTGATTGTGA
TGTCGTGCGCTTTTCGTCTCTCCACCCGCTGGTGCTGGCTGTATTTCCAA
CCTCTAGACCAACGCGGGCACCGATGGTTTACACAATTGTTTTGGAAGAT
GCGTTGCTGATGTGATGGTTTGATGCTGCTGCGGTCTTTGTGCCAAAACT
TGCAGCGCTCTGGCTTCCTCTCGTTTGTGTCCGGGCCTGTTGCTAGCGCA
AGTCGCGTCTCTGGAAGGATGAGGAAATAATGAAGTGGTTACAGGGGGGT
GATTGTATGGAAACAGGCAAGTAGCGGCTGACCCTTGGATGCCCTGTTGA
AGGAGTACTGTGGTGCAGTCATTGTCCAGTGTTGAAAATATAGGCAGCCC
TTTTGTGATATGTTGGTCGGGTTGCGCAGAGCGGACAATCGAAGTCGTCT
GCGTCCACCCGGTGTTTGGGACGTGTTTTTCGACTTGGGGAACCTGTCGG
GAACAATAGTTTGCTCATTCAGTGATACAAGTGTATACTGTAGATTGATA
TCAAAATCCGTCAACCAGAGTGTCCATTCAAAAAACGATTGCCGATACGG
GGATGGGTTGGCCGATATGGGCTCTAAATGCGACATACAAGCATGCAACG
TAGAGACTCCGAAGCACTGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1016:31162..34582-

>mRNA_E-siliculosus-1a_F_contig1016.164.1 ID=mRNA_E-siliculosus-1a_F_contig1016.164.1|Name=mRNA_E-siliculosus-1a_F_contig1016.164.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1494bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1016:31162..34582- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGGATGCTCCTAAGAAAGGCTCCGGCAGGGTTCGAAAGCCACAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCGCCCACAAGCACCACAAGGGGGAG
CGGCCGGCGCACCGAGAGGGGCGAGGGCCGCGGTAGTTGGAGGGGCAGGG
ATGCAACCCCCCCCTCCTAGAACACACCCACCTAATCCCCCCCCCCCCGG
GCAGCAGCCGCAGGTAATGGTGTACCCCCAACACCCCCAGCACCATCTAC
AACAACACCAACAACACCAACAACACCAACAACACCAACAGCATCCGCAG
CATCCCCAGCATCCCCAGCACCCGCAACGGATGGGGCTCCCTGGGATGGG
CTTTCAGCACCCCATACCGCCCCCGCCACCACCCCCGGCGTTTTTTCCTG
GGTCGGCGAGTCTGTTCGAGCAGCTCGACAAGCGGGTCATGATGGCGGAT
GCTCCTAAGAAAGGCTCCGGCAGGGTTCGAAAGCCACAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCGCCCACAAGCACCACAAGGGGGAGCGGCCGGCG
CACCGAGAGGGGCGAGGGCCGCGGTAGTTGGAGGGGCAGGGATGCAACCC
CCCCCTCCTAGAACACACCCACCTAATCCCCCCCCCCCCGGGCAGCAGCC
GCAGGTAATGGTGTACCCCCAACACCCCCAGCACCATCTACAACAACACC
AACAACACCAACAACACCAACAACACCAACAGCATCCGCAGCATCCCCAG
CATCCCCAGCACCCGCAACGGATGGGGCTCCCTGGGATGGGCTTTCAGCA
CCCCATACCGCCCCCGCCACCACCCCCGGCGTTTTTTCCTGGGTCGGCGA
GTCTGTTCGAGCAGCTCGACAAGCGGGTCATGGTCGTTCTTCGCGACGGT
AGGCACCTGGTGGGAGTTATGAGAAGCTACGACCAGTTTTCCAACATCGT
GCTGGAAGACACGCACGAACGACACTTTGTGAGAGGTCGTTCTTCGCGAC
GGTAGGCACCTGGTGGGAGTTATGAGAAGCTACGACCAGTTTTCCAACAT
CGTGCTGGAAGACACGCACGAACGACACTTTGTGAGAGATATTTTCGGGG
ATATATCGCTTGGGCTTTACCTTGTCCGAGGGGATGCTCTGGTGTTGATG
GGGGAACTCGACGAGACCCGGGAGGAAACTCCCAGGCTGAGAAGGGTCTC
CGCGGACGAGATAATCGAGGCGCAGCAGGAGGCATCGGCAGAGGAGCGCC
AAGACGCGAAGCTAGACTGGTTGTTCCAGGACTTGTCGTGAATATTTTCG
GGGATATATCGCTTGGGCTTTACCTTGTCCGAGGGGATGCTCTGGTGTTG
ATGGGGGAACTCGACGAGACCCGGGAGGAAACTCCCAGGCTGAGAAGGGT
CTCCGCGGACGAGATAATCGAGGCGCAGCAGGAGGCATCGGCAGAGGAGC
GCCAAGACGCGAAGCTAGACTGGTTGTTCCAGGACTTGTCGTGA
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