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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1015.158.1 vs. uniprot
Match: D8LQJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ5_ECTSI) HSP 1 Score: 551 bits (1419), Expect = 3.830e-197 Identity = 292/306 (95.42%), Postives = 297/306 (97.06%), Query Frame = 1 Query: 1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEAPAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPLLAHHRQFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTFETEQEADDEGDGISEGEAGTMRETRGSTSETADARATSVERTSTQDGRRAGTGTAEGKARKKQNSTAGKEVNVAAVGNAAEAGRKRQADRDLIEEQLEKEALAIFQEMKKCMIYHDLY 918
MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEA AVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPP+LAH R+FPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKT+ETEQEADDEGDGISEGEAGT+RETRGSTSETADA ATSVERTSTQDG RAGTG+AEGKA KKQN AGKE NVAAVGNAAEAGRKRQADRDLIEEQLEKEAL IFQEMKKCMIYHDLY
Sbjct: 1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEASAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPMLAHDRRFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTYETEQEADDEGDGISEGEAGTIRETRGSTSETADASATSVERTSTQDGTRAGTGSAEGKAGKKQNPAAGKEGNVAAVGNAAEAGRKRQADRDLIEEQLEKEALVIFQEMKKCMIYHDLY 306
BLAST of mRNA_E-siliculosus-1a_F_contig1015.158.1 vs. uniprot
Match: D7FZ55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ55_ECTSI) HSP 1 Score: 176 bits (445), Expect = 7.010e-48 Identity = 96/190 (50.53%), Postives = 116/190 (61.05%), Query Frame = 1 Query: 1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEAPAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPLLAHHRQFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTFET 570
+Y F G A V VTG+A S R ALVASVS AG VEP SLS +D++P + G GPL S VLIEQ K+ GA E+ W+G LPPL AH R FPSE G+Y +L EP+T+ G+ICRADWV+ + VCR T GG KRE+ W P CSIC SPC+ I ++F A S R E T ET
Sbjct: 104 LYEPRFGGSATVKVTGEACSDNRLALVASVSSAGTSVEPPSLSCAVDVTPGDV------------GGGPLGSTVLIEQIKRVGALAEDSWKGLLPPLSAHERDFPSEEGSYNKLDEPLTLTGSICRADWVEPMTGVCRTTTAGGGKREDGWTPQACSICNTLESSPCRDIHKKFDAVSTRIYELQPTSET 281
BLAST of mRNA_E-siliculosus-1a_F_contig1015.158.1 vs. uniprot
Match: A0A6H5JUT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT1_9PHAE) HSP 1 Score: 168 bits (425), Expect = 5.150e-45 Identity = 91/190 (47.89%), Postives = 115/190 (60.53%), Query Frame = 1 Query: 1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEAPAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPLLAHHRQFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTFET 570
+Y F A V +TG+ASS R ALVASVS AG VEP SLS +D++P + G GPL S VLIEQ K+ GA E+ W+G LP L AH R F SE G+Y +L EP+T+ G+ICRADWV+G + VCR T GG KRE+ W P C+IC SPC+ I++ F A + R +E ET
Sbjct: 100 LYEPRFGDSATVKLTGEASSENRVALVASVSSAGTSVEPPSLSCAVDVTPGEV------------GGGPLGSTVLIEQIKRVGAVAEDSWKGLLPALSAHERDFLSEEGSYNKLDEPLTLTGSICRADWVEGMTGVCRTTTAGGGKREDGWTPQPCTICNSLESSPCRDIYKEFDALNTRINELQPPSET 277
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 921 |
| Model size | 921 |
| Exons | 4 |
| Ec32 ortholog | Ec-10_005940.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1015.158.1 >prot_E-siliculosus-1a_F_contig1015.158.1 ID=prot_E-siliculosus-1a_F_contig1015.158.1|Name=mRNA_E-siliculosus-1a_F_contig1015.158.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=307bp
MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISP
PAITDPEAPAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPLLAH
HRQFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREED
WEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTFETEQEADDEGDG
ISEGEAGTMRETRGSTSETADARATSVERTSTQDGRRAGTGTAEGKARKK
QNSTAGKEVNVAAVGNAAEAGRKRQADRDLIEEQLEKEALAIFQEMKKCM
IYHDLY* back to topmRNA from alignment at E-siliculosus-1a_F_contig1015:34162..36064+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1015.158.1 ID=mRNA_E-siliculosus-1a_F_contig1015.158.1|Name=mRNA_E-siliculosus-1a_F_contig1015.158.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1903bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1015:34162..36064+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTACCGGCACCTGTTCAGCGGCAAGGCCGAAGTCACGGTGAGGAGAGT
CTCGTCGAGTTTTGTTACGTGCTGACTGTGATCTGGGTGCGTTGTGAGGG
TGTTGTGCAAACAACAACAATTTTGGTGTGTTACTGTGGCGTCGGGACTA
TGTAGTAGCCTTGTGCATCCTGTAGCATGTCTAGTGACTTGGGCAGCCCT
CGGTACCATAGAGGGGGACGGCAGCCGTCCCCGAAGGAAGCTCGAATGCC
ATCGAAAAACGAAGAACTGCTGGTGCGCTATGCTTTCTCTCGACACAACG
CGGTATGAGTACACGACATCCTTGATGAAACTGCCGAGCCGCCGAACTAA
GGCGAAGCTCTTTTTTCTCGTCGTTCGACAACGCTTGCTCTGGTTCTCCC
CGTGACAGGTGACGGGGGACGCCTCAAGCTTTGCGCGGCGCGCTCTGGTT
GCCTCCGTATCTCACGCTGGAAAGATTGTCGAACCGGCGTCTCTATCGGC
GACGATCGATATCTCGCCTCCTGCCATCACAGACCCTGAGGCACCAGCGG
TGGCGGAAAACGATGGTCCGGGACCCCTGGCCAGCGCCGTATTGATTGAA
CAGGCCAAAAAGGCCGGGGCGACAAAGGAGGTATGGTCTGGTGCATGGGT
AGATGCGAGGGGAGGAGTGTACTATATGTTCGACGGGGAAGATGGTTGAT
GCGTTTGCAGCAGTTTGGTTTCCGCGGTGTGTTTGGTGTTTACTCCTTTC
CTTTCCGTCTCTGCATGCGTGCCTGTTTGCGAATTGCTTGCCTTTTTCTC
CTTCGTTGTTATCATGCATTTTTCAATTGAGGTCGGGCCTCAACATACTC
CTCATCCACCATACTTTCGCCGTCCCGACCGTGTCCGATTGATCAGGAAA
TGTGGGAGGGCACACTTCCACCCTTGTTGGCCCACCACCGTCAATTCCCA
AGTGAACCAGGAGCGTACGTAAGGCTTAAGGAACCCATTACCGTCTACGG
CACTATTTGCCGCGCCGATTGGGTCGACGGCGCGTCCAATGTTTGCCGAG
ATACATTGGAGGGAGGGCAGAAGAGAGAGGAAGATTGGGAACCTTCGGAC
TGTTCCATCTGCGCGTTTTTCTCCGTCAGCCCGTGCAAGGGGATTTTCGA
AAGGTAAGGCACCCCGACGACCCTGTCCCAGAATCCCAGTGTCTCCTCGT
AAGACCTCGTCAGTGTTCAAGACCCATCGCTCCGATTGGCGCATGTCCTG
CAGATACGACAGGGGCGAGTTCGCTCAAAGGCTCTCATGTTCTCGAGCAA
GCTACTCTGCCAGAGGCTCAATGTGATACGCCGCGTACGGCTAGCACCAG
GTCAACATGGTTTCTGCTGGGCACGGCACTCTTGCACCTTGCAAGAGTGC
TCATGTAGATGGCCATACGATGTCGAGTATAGTACGACTACAACAGTAGG
GAGCAACACGCTGTTTTACTTCTCCGGCGTTTTTTTACGGTAAAACACAG
GTTTGTAGCAACGAGCAAACGTCGGGACGAGTACCTCAAAACGTTCGAAA
CAGAGCAAGAAGCAGATGACGAGGGAGACGGAATTTCCGAGGGAGAGGCA
GGCACTATGCGAGAAACCCGCGGAAGTACCAGCGAGACGGCGGACGCAAG
AGCAACCTCGGTGGAACGAACAAGTACACAAGACGGTAGGCGTGCCGGCA
CTGGCACGGCGGAGGGGAAGGCAAGAAAGAAACAAAATTCGACCGCTGGA
AAGGAGGTAAACGTTGCGGCGGTGGGAAACGCTGCTGAAGCAGGGCGGAA
GCGGCAGGCGGACCGAGACCTCATCGAAGAGCAGCTGGAGAAGGAAGCTT
TGGCCATTTTCCAAGAAATGAAGAAGTGCATGATCTACCATGACCTGTAC
TAA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1015:34162..36064+ >mRNA_E-siliculosus-1a_F_contig1015.158.1 ID=mRNA_E-siliculosus-1a_F_contig1015.158.1|Name=mRNA_E-siliculosus-1a_F_contig1015.158.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1842bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1015:34162..36064+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTACCGGCACCTGTTCAGCGGCAAGGCCGAAGTCACGATGTACCGGCA
CCTGTTCAGCGGCAAGGCCGAAGTCACGGTGACGGGGGACGCCTCAAGCT
TTGCGCGGCGCGCTCTGGTTGCCTCCGTATCTCACGCTGGAAAGATTGTC
GAACCGGCGTCTCTATCGGCGACGATCGATATCTCGCCTCCTGCCATCAC
AGACCCTGAGGCACCAGCGGTGGCGGAAAACGATGGTCCGGGACCCCTGG
CCAGCGCCGTATTGATTGAACAGGCCAAAAAGGCCGGGGCGACAAAGGAG
GTGACGGGGGACGCCTCAAGCTTTGCGCGGCGCGCTCTGGTTGCCTCCGT
ATCTCACGCTGGAAAGATTGTCGAACCGGCGTCTCTATCGGCGACGATCG
ATATCTCGCCTCCTGCCATCACAGACCCTGAGGCACCAGCGGTGGCGGAA
AACGATGGTCCGGGACCCCTGGCCAGCGCCGTATTGATTGAACAGGCCAA
AAAGGCCGGGGCGACAAAGGAGGAAATGTGGGAGGGCACACTTCCACCCT
TGTTGGCCCACCACCGTCAATTCCCAAGTGAACCAGGAGCGTACGTAAGG
CTTAAGGAACCCATTACCGTCTACGGCACTATTTGCCGCGCCGATTGGGT
CGACGGCGCGTCCAATGTTTGCCGAGATACATTGGAGGGAGGGCAGAAGA
GAGAGGAAGATTGGGAACCTTCGGACTGTTCCATCTGCGCGTTTTTCTCC
GTCAGCCCGTGCAAGGGGATTTTCGAAAGGAAATGTGGGAGGGCACACTT
CCACCCTTGTTGGCCCACCACCGTCAATTCCCAAGTGAACCAGGAGCGTA
CGTAAGGCTTAAGGAACCCATTACCGTCTACGGCACTATTTGCCGCGCCG
ATTGGGTCGACGGCGCGTCCAATGTTTGCCGAGATACATTGGAGGGAGGG
CAGAAGAGAGAGGAAGATTGGGAACCTTCGGACTGTTCCATCTGCGCGTT
TTTCTCCGTCAGCCCGTGCAAGGGGATTTTCGAAAGGTTTGTAGCAACGA
GCAAACGTCGGGACGAGTACCTCAAAACGTTCGAAACAGAGCAAGAAGCA
GATGACGAGGGAGACGGAATTTCCGAGGGAGAGGCAGGCACTATGCGAGA
AACCCGCGGAAGTACCAGCGAGACGGCGGACGCAAGAGCAACCTCGGTGG
AACGAACAAGTACACAAGACGGTAGGCGTGCCGGCACTGGCACGGCGGAG
GGGAAGGCAAGAAAGAAACAAAATTCGACCGCTGGAAAGGAGGTAAACGT
TGCGGCGGTGGGAAACGCTGCTGAAGCAGGGCGGAAGCGGCAGGCGGACC
GAGACCTCATCGAAGAGCAGCTGGAGAAGGAAGCTTTGGCCATTTTCCAA
GAAATGAAGAAGTGCATGATCTACCATGACCTGTACTAAGTTTGTAGCAA
CGAGCAAACGTCGGGACGAGTACCTCAAAACGTTCGAAACAGAGCAAGAA
GCAGATGACGAGGGAGACGGAATTTCCGAGGGAGAGGCAGGCACTATGCG
AGAAACCCGCGGAAGTACCAGCGAGACGGCGGACGCAAGAGCAACCTCGG
TGGAACGAACAAGTACACAAGACGGTAGGCGTGCCGGCACTGGCACGGCG
GAGGGGAAGGCAAGAAAGAAACAAAATTCGACCGCTGGAAAGGAGGTAAA
CGTTGCGGCGGTGGGAAACGCTGCTGAAGCAGGGCGGAAGCGGCAGGCGG
ACCGAGACCTCATCGAAGAGCAGCTGGAGAAGGAAGCTTTGGCCATTTTC
CAAGAAATGAAGAAGTGCATGATCTACCATGACCTGTACTAA back to top
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