mRNA_E-siliculosus-1a_F_contig1015.158.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1015.158.1
Unique NamemRNA_E-siliculosus-1a_F_contig1015.158.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1015.158.1 vs. uniprot
Match: D8LQJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ5_ECTSI)

HSP 1 Score: 551 bits (1419), Expect = 3.830e-197
Identity = 292/306 (95.42%), Postives = 297/306 (97.06%), Query Frame = 1 
Query:    1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEAPAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPLLAHHRQFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTFETEQEADDEGDGISEGEAGTMRETRGSTSETADARATSVERTSTQDGRRAGTGTAEGKARKKQNSTAGKEVNVAAVGNAAEAGRKRQADRDLIEEQLEKEALAIFQEMKKCMIYHDLY 918
            MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEA AVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPP+LAH R+FPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKT+ETEQEADDEGDGISEGEAGT+RETRGSTSETADA ATSVERTSTQDG RAGTG+AEGKA KKQN  AGKE NVAAVGNAAEAGRKRQADRDLIEEQLEKEAL IFQEMKKCMIYHDLY
Sbjct:    1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEASAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPMLAHDRRFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTYETEQEADDEGDGISEGEAGTIRETRGSTSETADASATSVERTSTQDGTRAGTGSAEGKAGKKQNPAAGKEGNVAAVGNAAEAGRKRQADRDLIEEQLEKEALVIFQEMKKCMIYHDLY 306
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BLAST of mRNA_E-siliculosus-1a_F_contig1015.158.1 vs. uniprot
Match: D7FZ55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ55_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 7.010e-48
Identity = 96/190 (50.53%), Postives = 116/190 (61.05%), Query Frame = 1 
Query:    1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEAPAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPLLAHHRQFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTFET 570
            +Y   F G A V VTG+A S  R ALVASVS AG  VEP SLS  +D++P  +            G GPL S VLIEQ K+ GA  E+ W+G LPPL AH R FPSE G+Y +L EP+T+ G+ICRADWV+  + VCR T  GG KRE+ W P  CSIC     SPC+ I ++F A S R  E   T ET
Sbjct:  104 LYEPRFGGSATVKVTGEACSDNRLALVASVSSAGTSVEPPSLSCAVDVTPGDV------------GGGPLGSTVLIEQIKRVGALAEDSWKGLLPPLSAHERDFPSEEGSYNKLDEPLTLTGSICRADWVEPMTGVCRTTTAGGGKREDGWTPQACSICNTLESSPCRDIHKKFDAVSTRIYELQPTSET 281
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BLAST of mRNA_E-siliculosus-1a_F_contig1015.158.1 vs. uniprot
Match: A0A6H5JUT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT1_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 5.150e-45
Identity = 91/190 (47.89%), Postives = 115/190 (60.53%), Query Frame = 1 
Query:    1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEAPAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPLLAHHRQFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTFET 570
            +Y   F   A V +TG+ASS  R ALVASVS AG  VEP SLS  +D++P  +            G GPL S VLIEQ K+ GA  E+ W+G LP L AH R F SE G+Y +L EP+T+ G+ICRADWV+G + VCR T  GG KRE+ W P  C+IC     SPC+ I++ F A + R +E     ET
Sbjct:  100 LYEPRFGDSATVKLTGEASSENRVALVASVSSAGTSVEPPSLSCAVDVTPGEV------------GGGPLGSTVLIEQIKRVGAVAEDSWKGLLPALSAHERDFLSEEGSYNKLDEPLTLTGSICRADWVEGMTGVCRTTTAGGGKREDGWTPQPCTICNSLESSPCRDIYKEFDALNTRINELQPPSET 277
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1015.158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQJ5_ECTSI3.830e-19795.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZ55_ECTSI7.010e-4850.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUT1_9PHAE5.150e-4547.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1015contigE-siliculosus-1a_F_contig1015:34162..36064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size921
Model size921
Exons4
Ec32 orthologEc-10_005940.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1015.158.1prot_E-siliculosus-1a_F_contig1015.158.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1015 34162..36064 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927517.520268-CDS-E-siliculosus-1a_F_contig1015:34161..342001622927517.520268-CDS-E-siliculosus-1a_F_contig1015:34161..34200Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1015 34162..34200 +
1696318564.1657186-CDS-E-siliculosus-1a_F_contig1015:34161..342001696318564.1657186-CDS-E-siliculosus-1a_F_contig1015:34161..34200Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1015 34162..34200 +
1622927517.5332298-CDS-E-siliculosus-1a_F_contig1015:34569..347911622927517.5332298-CDS-E-siliculosus-1a_F_contig1015:34569..34791Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1015 34570..34791 +
1696318564.175255-CDS-E-siliculosus-1a_F_contig1015:34569..347911696318564.175255-CDS-E-siliculosus-1a_F_contig1015:34569..34791Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1015 34570..34791 +
1622927517.547243-CDS-E-siliculosus-1a_F_contig1015:35057..353141622927517.547243-CDS-E-siliculosus-1a_F_contig1015:35057..35314Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1015 35058..35314 +
1696318564.1847086-CDS-E-siliculosus-1a_F_contig1015:35057..353141696318564.1847086-CDS-E-siliculosus-1a_F_contig1015:35057..35314Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1015 35058..35314 +
1622927517.5578394-CDS-E-siliculosus-1a_F_contig1015:35661..360641622927517.5578394-CDS-E-siliculosus-1a_F_contig1015:35661..36064Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1015 35662..36064 +
1696318564.1938322-CDS-E-siliculosus-1a_F_contig1015:35661..360641696318564.1938322-CDS-E-siliculosus-1a_F_contig1015:35661..36064Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1015 35662..36064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1015.158.1

>prot_E-siliculosus-1a_F_contig1015.158.1 ID=prot_E-siliculosus-1a_F_contig1015.158.1|Name=mRNA_E-siliculosus-1a_F_contig1015.158.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=307bp
MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISP
PAITDPEAPAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPLLAH
HRQFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREED
WEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTFETEQEADDEGDG
ISEGEAGTMRETRGSTSETADARATSVERTSTQDGRRAGTGTAEGKARKK
QNSTAGKEVNVAAVGNAAEAGRKRQADRDLIEEQLEKEALAIFQEMKKCM
IYHDLY*
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mRNA from alignment at E-siliculosus-1a_F_contig1015:34162..36064+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1015.158.1 ID=mRNA_E-siliculosus-1a_F_contig1015.158.1|Name=mRNA_E-siliculosus-1a_F_contig1015.158.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1903bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1015:34162..36064+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTACCGGCACCTGTTCAGCGGCAAGGCCGAAGTCACGGTGAGGAGAGT
CTCGTCGAGTTTTGTTACGTGCTGACTGTGATCTGGGTGCGTTGTGAGGG
TGTTGTGCAAACAACAACAATTTTGGTGTGTTACTGTGGCGTCGGGACTA
TGTAGTAGCCTTGTGCATCCTGTAGCATGTCTAGTGACTTGGGCAGCCCT
CGGTACCATAGAGGGGGACGGCAGCCGTCCCCGAAGGAAGCTCGAATGCC
ATCGAAAAACGAAGAACTGCTGGTGCGCTATGCTTTCTCTCGACACAACG
CGGTATGAGTACACGACATCCTTGATGAAACTGCCGAGCCGCCGAACTAA
GGCGAAGCTCTTTTTTCTCGTCGTTCGACAACGCTTGCTCTGGTTCTCCC
CGTGACAGGTGACGGGGGACGCCTCAAGCTTTGCGCGGCGCGCTCTGGTT
GCCTCCGTATCTCACGCTGGAAAGATTGTCGAACCGGCGTCTCTATCGGC
GACGATCGATATCTCGCCTCCTGCCATCACAGACCCTGAGGCACCAGCGG
TGGCGGAAAACGATGGTCCGGGACCCCTGGCCAGCGCCGTATTGATTGAA
CAGGCCAAAAAGGCCGGGGCGACAAAGGAGGTATGGTCTGGTGCATGGGT
AGATGCGAGGGGAGGAGTGTACTATATGTTCGACGGGGAAGATGGTTGAT
GCGTTTGCAGCAGTTTGGTTTCCGCGGTGTGTTTGGTGTTTACTCCTTTC
CTTTCCGTCTCTGCATGCGTGCCTGTTTGCGAATTGCTTGCCTTTTTCTC
CTTCGTTGTTATCATGCATTTTTCAATTGAGGTCGGGCCTCAACATACTC
CTCATCCACCATACTTTCGCCGTCCCGACCGTGTCCGATTGATCAGGAAA
TGTGGGAGGGCACACTTCCACCCTTGTTGGCCCACCACCGTCAATTCCCA
AGTGAACCAGGAGCGTACGTAAGGCTTAAGGAACCCATTACCGTCTACGG
CACTATTTGCCGCGCCGATTGGGTCGACGGCGCGTCCAATGTTTGCCGAG
ATACATTGGAGGGAGGGCAGAAGAGAGAGGAAGATTGGGAACCTTCGGAC
TGTTCCATCTGCGCGTTTTTCTCCGTCAGCCCGTGCAAGGGGATTTTCGA
AAGGTAAGGCACCCCGACGACCCTGTCCCAGAATCCCAGTGTCTCCTCGT
AAGACCTCGTCAGTGTTCAAGACCCATCGCTCCGATTGGCGCATGTCCTG
CAGATACGACAGGGGCGAGTTCGCTCAAAGGCTCTCATGTTCTCGAGCAA
GCTACTCTGCCAGAGGCTCAATGTGATACGCCGCGTACGGCTAGCACCAG
GTCAACATGGTTTCTGCTGGGCACGGCACTCTTGCACCTTGCAAGAGTGC
TCATGTAGATGGCCATACGATGTCGAGTATAGTACGACTACAACAGTAGG
GAGCAACACGCTGTTTTACTTCTCCGGCGTTTTTTTACGGTAAAACACAG
GTTTGTAGCAACGAGCAAACGTCGGGACGAGTACCTCAAAACGTTCGAAA
CAGAGCAAGAAGCAGATGACGAGGGAGACGGAATTTCCGAGGGAGAGGCA
GGCACTATGCGAGAAACCCGCGGAAGTACCAGCGAGACGGCGGACGCAAG
AGCAACCTCGGTGGAACGAACAAGTACACAAGACGGTAGGCGTGCCGGCA
CTGGCACGGCGGAGGGGAAGGCAAGAAAGAAACAAAATTCGACCGCTGGA
AAGGAGGTAAACGTTGCGGCGGTGGGAAACGCTGCTGAAGCAGGGCGGAA
GCGGCAGGCGGACCGAGACCTCATCGAAGAGCAGCTGGAGAAGGAAGCTT
TGGCCATTTTCCAAGAAATGAAGAAGTGCATGATCTACCATGACCTGTAC
TAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1015:34162..36064+

>mRNA_E-siliculosus-1a_F_contig1015.158.1 ID=mRNA_E-siliculosus-1a_F_contig1015.158.1|Name=mRNA_E-siliculosus-1a_F_contig1015.158.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1842bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1015:34162..36064+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTACCGGCACCTGTTCAGCGGCAAGGCCGAAGTCACGATGTACCGGCA
CCTGTTCAGCGGCAAGGCCGAAGTCACGGTGACGGGGGACGCCTCAAGCT
TTGCGCGGCGCGCTCTGGTTGCCTCCGTATCTCACGCTGGAAAGATTGTC
GAACCGGCGTCTCTATCGGCGACGATCGATATCTCGCCTCCTGCCATCAC
AGACCCTGAGGCACCAGCGGTGGCGGAAAACGATGGTCCGGGACCCCTGG
CCAGCGCCGTATTGATTGAACAGGCCAAAAAGGCCGGGGCGACAAAGGAG
GTGACGGGGGACGCCTCAAGCTTTGCGCGGCGCGCTCTGGTTGCCTCCGT
ATCTCACGCTGGAAAGATTGTCGAACCGGCGTCTCTATCGGCGACGATCG
ATATCTCGCCTCCTGCCATCACAGACCCTGAGGCACCAGCGGTGGCGGAA
AACGATGGTCCGGGACCCCTGGCCAGCGCCGTATTGATTGAACAGGCCAA
AAAGGCCGGGGCGACAAAGGAGGAAATGTGGGAGGGCACACTTCCACCCT
TGTTGGCCCACCACCGTCAATTCCCAAGTGAACCAGGAGCGTACGTAAGG
CTTAAGGAACCCATTACCGTCTACGGCACTATTTGCCGCGCCGATTGGGT
CGACGGCGCGTCCAATGTTTGCCGAGATACATTGGAGGGAGGGCAGAAGA
GAGAGGAAGATTGGGAACCTTCGGACTGTTCCATCTGCGCGTTTTTCTCC
GTCAGCCCGTGCAAGGGGATTTTCGAAAGGAAATGTGGGAGGGCACACTT
CCACCCTTGTTGGCCCACCACCGTCAATTCCCAAGTGAACCAGGAGCGTA
CGTAAGGCTTAAGGAACCCATTACCGTCTACGGCACTATTTGCCGCGCCG
ATTGGGTCGACGGCGCGTCCAATGTTTGCCGAGATACATTGGAGGGAGGG
CAGAAGAGAGAGGAAGATTGGGAACCTTCGGACTGTTCCATCTGCGCGTT
TTTCTCCGTCAGCCCGTGCAAGGGGATTTTCGAAAGGTTTGTAGCAACGA
GCAAACGTCGGGACGAGTACCTCAAAACGTTCGAAACAGAGCAAGAAGCA
GATGACGAGGGAGACGGAATTTCCGAGGGAGAGGCAGGCACTATGCGAGA
AACCCGCGGAAGTACCAGCGAGACGGCGGACGCAAGAGCAACCTCGGTGG
AACGAACAAGTACACAAGACGGTAGGCGTGCCGGCACTGGCACGGCGGAG
GGGAAGGCAAGAAAGAAACAAAATTCGACCGCTGGAAAGGAGGTAAACGT
TGCGGCGGTGGGAAACGCTGCTGAAGCAGGGCGGAAGCGGCAGGCGGACC
GAGACCTCATCGAAGAGCAGCTGGAGAAGGAAGCTTTGGCCATTTTCCAA
GAAATGAAGAAGTGCATGATCTACCATGACCTGTACTAAGTTTGTAGCAA
CGAGCAAACGTCGGGACGAGTACCTCAAAACGTTCGAAACAGAGCAAGAA
GCAGATGACGAGGGAGACGGAATTTCCGAGGGAGAGGCAGGCACTATGCG
AGAAACCCGCGGAAGTACCAGCGAGACGGCGGACGCAAGAGCAACCTCGG
TGGAACGAACAAGTACACAAGACGGTAGGCGTGCCGGCACTGGCACGGCG
GAGGGGAAGGCAAGAAAGAAACAAAATTCGACCGCTGGAAAGGAGGTAAA
CGTTGCGGCGGTGGGAAACGCTGCTGAAGCAGGGCGGAAGCGGCAGGCGG
ACCGAGACCTCATCGAAGAGCAGCTGGAGAAGGAAGCTTTGGCCATTTTC
CAAGAAATGAAGAAGTGCATGATCTACCATGACCTGTACTAA
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