mRNA_E-siliculosus-1a_F_contig1015.158.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1015.158.1 vs. uniprot
Match: D8LQJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ5_ECTSI) HSP 1 Score: 551 bits (1419), Expect = 3.830e-197 Identity = 292/306 (95.42%), Postives = 297/306 (97.06%), Query Frame = 1 Query: 1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEAPAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPLLAHHRQFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTFETEQEADDEGDGISEGEAGTMRETRGSTSETADARATSVERTSTQDGRRAGTGTAEGKARKKQNSTAGKEVNVAAVGNAAEAGRKRQADRDLIEEQLEKEALAIFQEMKKCMIYHDLY 918
MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEA AVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPP+LAH R+FPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKT+ETEQEADDEGDGISEGEAGT+RETRGSTSETADA ATSVERTSTQDG RAGTG+AEGKA KKQN AGKE NVAAVGNAAEAGRKRQADRDLIEEQLEKEAL IFQEMKKCMIYHDLY
Sbjct: 1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEASAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPMLAHDRRFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTYETEQEADDEGDGISEGEAGTIRETRGSTSETADASATSVERTSTQDGTRAGTGSAEGKAGKKQNPAAGKEGNVAAVGNAAEAGRKRQADRDLIEEQLEKEALVIFQEMKKCMIYHDLY 306
BLAST of mRNA_E-siliculosus-1a_F_contig1015.158.1 vs. uniprot
Match: D7FZ55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ55_ECTSI) HSP 1 Score: 176 bits (445), Expect = 7.010e-48 Identity = 96/190 (50.53%), Postives = 116/190 (61.05%), Query Frame = 1 Query: 1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEAPAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPLLAHHRQFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTFET 570
+Y F G A V VTG+A S R ALVASVS AG VEP SLS +D++P + G GPL S VLIEQ K+ GA E+ W+G LPPL AH R FPSE G+Y +L EP+T+ G+ICRADWV+ + VCR T GG KRE+ W P CSIC SPC+ I ++F A S R E T ET
Sbjct: 104 LYEPRFGGSATVKVTGEACSDNRLALVASVSSAGTSVEPPSLSCAVDVTPGDV------------GGGPLGSTVLIEQIKRVGALAEDSWKGLLPPLSAHERDFPSEEGSYNKLDEPLTLTGSICRADWVEPMTGVCRTTTAGGGKREDGWTPQACSICNTLESSPCRDIHKKFDAVSTRIYELQPTSET 281
BLAST of mRNA_E-siliculosus-1a_F_contig1015.158.1 vs. uniprot
Match: A0A6H5JUT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT1_9PHAE) HSP 1 Score: 168 bits (425), Expect = 5.150e-45 Identity = 91/190 (47.89%), Postives = 115/190 (60.53%), Query Frame = 1 Query: 1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEAPAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPLLAHHRQFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTFET 570
+Y F A V +TG+ASS R ALVASVS AG VEP SLS +D++P + G GPL S VLIEQ K+ GA E+ W+G LP L AH R F SE G+Y +L EP+T+ G+ICRADWV+G + VCR T GG KRE+ W P C+IC SPC+ I++ F A + R +E ET
Sbjct: 100 LYEPRFGDSATVKLTGEASSENRVALVASVSSAGTSVEPPSLSCAVDVTPGEV------------GGGPLGSTVLIEQIKRVGAVAEDSWKGLLPALSAHERDFLSEEGSYNKLDEPLTLTGSICRADWVEGMTGVCRTTTAGGGKREDGWTPQPCTICNSLESSPCRDIYKEFDALNTRINELQPPSET 277 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1015.158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1015.158.1 >prot_E-siliculosus-1a_F_contig1015.158.1 ID=prot_E-siliculosus-1a_F_contig1015.158.1|Name=mRNA_E-siliculosus-1a_F_contig1015.158.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=307bp MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPback to top mRNA from alignment at E-siliculosus-1a_F_contig1015:34162..36064+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1015.158.1 ID=mRNA_E-siliculosus-1a_F_contig1015.158.1|Name=mRNA_E-siliculosus-1a_F_contig1015.158.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1903bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1015:34162..36064+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1015:34162..36064+ >mRNA_E-siliculosus-1a_F_contig1015.158.1 ID=mRNA_E-siliculosus-1a_F_contig1015.158.1|Name=mRNA_E-siliculosus-1a_F_contig1015.158.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1842bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1015:34162..36064+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |