Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match:
E6ZER2_ECTSI (NADH-ubiquinone oxidoreductase, subunit 4L n=85 Tax=Phaeophyceae TaxID=2870 RepID=E6ZER2_ECTSI)
HSP 1 Score: 174 bits (440), Expect = 1.170e-54
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 1
Query: 1 MDFIHFFFVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 300
MDFIHFFFVSTLLF+IGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESS+GLAIILVYFRVRGSIRIDQASLLKS
Sbjct: 1 MDFIHFFFVSTLLFVIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSVGLAIILVYFRVRGSIRIDQASLLKS 100
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match:
Q94Z11_PYLLI (NADH dehydrogenase subunit 4L n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z11_PYLLI)
HSP 1 Score: 160 bits (406), Expect = 1.790e-49
Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 1
Query: 1 MDFIHFFFVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 300
M FIHFF++STLLFIIGVGGVI NRTNIVVVLMSLELALLSVSLNFIIFS CL DLTGQIFAIFILVIAACESSIGLAIILV+FRVRGSIR+DQASLLKS
Sbjct: 1 MYFIHFFYLSTLLFIIGVGGVIFNRTNIVVVLMSLELALLSVSLNFIIFSVCLDDLTGQIFAIFILVIAACESSIGLAIILVFFRVRGSIRLDQASLLKS 100
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match:
A0A1L2F1H7_9PHAE (Nad4L n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1H7_9PHAE)
HSP 1 Score: 145 bits (367), Expect = 1.630e-43
Identity = 85/101 (84.16%), Postives = 91/101 (90.10%), Query Frame = 1
Query: 1 MDFIHFFFVSTLLFIIGV-GGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 300
MDFIHFFF +++ V GGV+LNRTNIVVVLMSLELALLSVSLNFIIFS CL DL GQIFAIFIL++AACESSIGLAIILVYFRVRGSIRIDQASLLKS
Sbjct: 1 MDFIHFFFSYPFYYLLLVWGGVVLNRTNIVVVLMSLELALLSVSLNFIIFSVCLADLIGQIFAIFILIVAACESSIGLAIILVYFRVRGSIRIDQASLLKS 101
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match:
A0A8E8PEE6_9PHAE (Nad4L n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PEE6_9PHAE)
HSP 1 Score: 144 bits (363), Expect = 6.440e-43
Identity = 79/100 (79.00%), Postives = 92/100 (92.00%), Query Frame = 1
Query: 1 MDFIHFFFVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 300
MD+I+ FF+S+L +I+GV GV+ N+TNIVV+LMSLELALL VSL F+IFS CLGDL GQIFAI+ILVIAACESSIGLAIILVYFRV+GSIR+DQASLLKS
Sbjct: 1 MDYIYLFFISSLFYILGVLGVLFNKTNIVVILMSLELALLGVSLGFLIFSVCLGDLQGQIFAIYILVIAACESSIGLAIILVYFRVKGSIRLDQASLLKS 100
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match:
Q2TUC4_DICDH (NADH dehydrogenase subunit 4L n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUC4_DICDH)
HSP 1 Score: 131 bits (330), Expect = 6.880e-38
Identity = 73/100 (73.00%), Postives = 87/100 (87.00%), Query Frame = 1
Query: 1 MDFIHFFFVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 300
M + +V++L+F IGVGGVILNRTNI+ +LMSLE++L S+SLNF+IFS L D+ GQIFA+FIL IAACESSIGLAIILVY+RVRGSIRIDQASLLKS
Sbjct: 1 MPILQLSYVTSLMFFIGVGGVILNRTNILAILMSLEISLFSISLNFLIFSVYLDDMIGQIFALFILTIAACESSIGLAIILVYYRVRGSIRIDQASLLKS 100
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match:
A0A8F0FEY2_9PHAE (NADH dehydrogenase subunit 4L n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FEY2_9PHAE)
HSP 1 Score: 130 bits (327), Expect = 1.970e-37
Identity = 70/93 (75.27%), Postives = 84/93 (90.32%), Query Frame = 1
Query: 22 FVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 300
FV +L+F IGVGGV+LNRTNI+ +LMSLE+AL SVSLNF+IFS L D+ GQIFA+FIL +AACESS+GLAIILVY+RVRGSIR+DQA+LLKS
Sbjct: 8 FVISLMFFIGVGGVVLNRTNILAILMSLEIALFSVSLNFLIFSVYLDDIMGQIFAVFILAVAACESSVGLAIILVYYRVRGSIRVDQAALLKS 100
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match:
A0A4Y5T8D2_9PHAE (NADH dehydrogenase subunit 4L n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8D2_9PHAE)
HSP 1 Score: 127 bits (318), Expect = 4.630e-36
Identity = 67/100 (67.00%), Postives = 85/100 (85.00%), Query Frame = 1
Query: 1 MDFIHFFFVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 300
M + ++++L+F IG+ GV+ NRTNI+ VLMSLE++L S+SLNF+IFS L D+ GQIFA+FIL +AACESSIGLAIILVY+RVRGSIR+DQASLLKS
Sbjct: 1 MSIVQLSYITSLMFFIGIAGVVFNRTNILAVLMSLEISLFSISLNFLIFSVYLDDIIGQIFALFILTVAACESSIGLAIILVYYRVRGSIRVDQASLLKS 100
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match:
A0A7S6ZPE7_9STRA (Nad4L n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPE7_9STRA)
HSP 1 Score: 114 bits (285), Expect = 4.900e-31
Identity = 56/100 (56.00%), Postives = 84/100 (84.00%), Query Frame = 1
Query: 1 MDFIHFFFVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 300
M+F+ F ++T +F +G+GG++LNRTNI+++LMS+E++LL++ LNF+I S L D+ GQ+F +FIL +A CESSIGLAIIL Y+RVRG IR+++ASL+K+
Sbjct: 1 MEFLQFCLLTTAMFFLGIGGIVLNRTNILILLMSIEVSLLALGLNFLILSVYLDDILGQVFCLFILTVAGCESSIGLAIILAYYRVRGRIRMNEASLMKA 100
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match:
UPI001A9736EA (NADH-quinone oxidoreductase subunit NuoK n=2 Tax=Acetobacteraceae TaxID=433 RepID=UPI001A9736EA)
HSP 1 Score: 111 bits (277), Expect = 8.820e-30
Identity = 59/95 (62.11%), Postives = 78/95 (82.11%), Query Frame = 1
Query: 13 HFFFVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLK 297
H+ VS +LF++GV G+ LNR NI+V+LMS+EL LLSV+LNF+ FSA L DLTGQIFA+F+L +AA E++IGLAI+++YFR RGSI +D S LK
Sbjct: 8 HYLTVSAILFVLGVLGIFLNRKNIIVILMSVELILLSVNLNFVAFSATLQDLTGQIFAMFVLTVAAAEAAIGLAILVIYFRNRGSIEVDNVSTLK 102
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match:
A0A1Z8KZX0_9PROT (NADH-quinone oxidoreductase subunit K n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1Z8KZX0_9PROT)
HSP 1 Score: 109 bits (273), Expect = 3.480e-29
Identity = 57/96 (59.38%), Postives = 79/96 (82.29%), Query Frame = 1
Query: 10 IHFFFVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLK 297
IH+ VS +LF +GV G+ NR N++V+LMS+EL LLSV++NF+ FSA LGDLTGQ+FA+FIL +AA E++IGLAI++VYFR RGSI ++ S++K
Sbjct: 6 IHYLVVSAILFTLGVIGIFANRRNVIVILMSIELILLSVNINFVAFSAYLGDLTGQVFAMFILTVAAAEAAIGLAILVVYFRNRGSIAVEDISMMK 101
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 1.17e-54 / Id = 98.00 Expect = 1.79e-49 / Id = 92.00 Expect = 1.63e-43 / Id = 84.16 Expect = 6.44e-43 / Id = 79.00 Expect = 6.88e-38 / Id = 73.00 Expect = 1.97e-37 / Id = 75.27 Expect = 4.63e-36 / Id = 67.00 Expect = 4.90e-31 / Id = 56.00 Expect = 8.82e-30 / Id = 62.11 Expect = 3.48e-29 / Id = 59.38 Sequence E6ZER2_ECTSI Q94Z11_PYLLI A0A1L2F1H7_9PHAE A0A8E8PEE6_9PHAE Q2TUC4_DICDH A0A8F0FEY2_9PHAE A0A4Y5T8D2_9PHAE A0A7S6ZPE7_9STRA UPI001A9736EA A0A1Z8KZX0_9PROT Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1 Stop 1 Cds size 303 Model size 303 Exons 1 Hectar predicted targeting category signal peptide BRITE ko00000,ko00001,ko00002,ko01000 Best eggNOG OG NA|NA|NA Best tax level Bartonellaceae COG Functional cat. C EC 1.6.5.3 EggNOG OGs 1RH0S@1224,2U93P@28211,48U6I@772,COG0713@1,COG0713@2 EggNOG free text desc. NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient GOs GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0030964,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0044425,GO:0044459,GO:0044464,GO:0045271,GO:0045272,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072521,GO:0098796,GO:0098797,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204 KEGG Module M00144 KEGG Pathway ko00190,ko01100,map00190,map01100 KEGG Reaction R11945 KEGG TC 3.D.1 KEGG ko ko:K00340 KEGG rclass RC00061 Preferred name nuoK Seed eggNOG ortholog 1134510.O9A_01006 Seed ortholog evalue 1.3e-21 Seed ortholog score 109.0 Taxonomic scope Bacteria
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927515.8436365-CDS-E-siliculosus-1a_F_contig10134:129..432 1622927515.8436365-CDS-E-siliculosus-1a_F_contig10134:129..432 Ectocarpus siliculosus Ec863f_EcPH12_90f female CDS E-siliculosus-1a_F_contig10134 130..432 - 1696318563.271144-CDS-E-siliculosus-1a_F_contig10134:129..432 1696318563.271144-CDS-E-siliculosus-1a_F_contig10134:129..432 Ectocarpus siliculosus Ec863f_EcPH12_90f female CDS E-siliculosus-1a_F_contig10134 130..432 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10134.141.1
>prot_E-siliculosus-1a_F_contig10134.141.1 ID=prot_E-siliculosus-1a_F_contig10134.141.1|Name=mRNA_E-siliculosus-1a_F_contig10134.141.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=101bp
MDFIHFFFVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFS back to top mRNA from alignment at E-siliculosus-1a_F_contig10134:130..432-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10134.141.1 ID=mRNA_E-siliculosus-1a_F_contig10134.141.1|Name=mRNA_E-siliculosus-1a_F_contig10134.141.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=303bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10134:130..432- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)ATGGACTTTATTCACTTCTTTTTTGTATCTACTTTATTATTTATAATCGG
TGTGGGAGGAGTTATTTTAAATAGAACAAATATTGTTGTTGTTCTTATGT
CTTTAGAGCTTGCTCTTCTTTCAGTAAGTCTTAATTTTATTATATTTTCT
GCTTGTTTGGGAGATCTTACGGGGCAAATATTTGCTATTTTTATTCTGGT
TATTGCAGCTTGTGAATCCTCTATAGGCTTAGCAATCATTTTAGTTTATT
TTCGGGTTCGGGGAAGTATTCGTATTGATCAAGCATCTTTATTAAAATCT
TAA back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10134:130..432-
>mRNA_E-siliculosus-1a_F_contig10134.141.1 ID=mRNA_E-siliculosus-1a_F_contig10134.141.1|Name=mRNA_E-siliculosus-1a_F_contig10134.141.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10134:130..432- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top