mRNA_E-siliculosus-1a_F_contig10134.141.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match: E6ZER2_ECTSI (NADH-ubiquinone oxidoreductase, subunit 4L n=85 Tax=Phaeophyceae TaxID=2870 RepID=E6ZER2_ECTSI) HSP 1 Score: 174 bits (440), Expect = 1.170e-54 Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 1 Query: 1 MDFIHFFFVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 300
MDFIHFFFVSTLLF+IGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESS+GLAIILVYFRVRGSIRIDQASLLKS
Sbjct: 1 MDFIHFFFVSTLLFVIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSVGLAIILVYFRVRGSIRIDQASLLKS 100
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match: Q94Z11_PYLLI (NADH dehydrogenase subunit 4L n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z11_PYLLI) HSP 1 Score: 160 bits (406), Expect = 1.790e-49 Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 1 Query: 1 MDFIHFFFVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 300
M FIHFF++STLLFIIGVGGVI NRTNIVVVLMSLELALLSVSLNFIIFS CL DLTGQIFAIFILVIAACESSIGLAIILV+FRVRGSIR+DQASLLKS
Sbjct: 1 MYFIHFFYLSTLLFIIGVGGVIFNRTNIVVVLMSLELALLSVSLNFIIFSVCLDDLTGQIFAIFILVIAACESSIGLAIILVFFRVRGSIRLDQASLLKS 100
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match: A0A1L2F1H7_9PHAE (Nad4L n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1H7_9PHAE) HSP 1 Score: 145 bits (367), Expect = 1.630e-43 Identity = 85/101 (84.16%), Postives = 91/101 (90.10%), Query Frame = 1 Query: 1 MDFIHFFFVSTLLFIIGV-GGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 300
MDFIHFFF +++ V GGV+LNRTNIVVVLMSLELALLSVSLNFIIFS CL DL GQIFAIFIL++AACESSIGLAIILVYFRVRGSIRIDQASLLKS
Sbjct: 1 MDFIHFFFSYPFYYLLLVWGGVVLNRTNIVVVLMSLELALLSVSLNFIIFSVCLADLIGQIFAIFILIVAACESSIGLAIILVYFRVRGSIRIDQASLLKS 101
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match: A0A8E8PEE6_9PHAE (Nad4L n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PEE6_9PHAE) HSP 1 Score: 144 bits (363), Expect = 6.440e-43 Identity = 79/100 (79.00%), Postives = 92/100 (92.00%), Query Frame = 1 Query: 1 MDFIHFFFVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 300
MD+I+ FF+S+L +I+GV GV+ N+TNIVV+LMSLELALL VSL F+IFS CLGDL GQIFAI+ILVIAACESSIGLAIILVYFRV+GSIR+DQASLLKS
Sbjct: 1 MDYIYLFFISSLFYILGVLGVLFNKTNIVVILMSLELALLGVSLGFLIFSVCLGDLQGQIFAIYILVIAACESSIGLAIILVYFRVKGSIRLDQASLLKS 100
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match: Q2TUC4_DICDH (NADH dehydrogenase subunit 4L n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUC4_DICDH) HSP 1 Score: 131 bits (330), Expect = 6.880e-38 Identity = 73/100 (73.00%), Postives = 87/100 (87.00%), Query Frame = 1 Query: 1 MDFIHFFFVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 300
M + +V++L+F IGVGGVILNRTNI+ +LMSLE++L S+SLNF+IFS L D+ GQIFA+FIL IAACESSIGLAIILVY+RVRGSIRIDQASLLKS
Sbjct: 1 MPILQLSYVTSLMFFIGVGGVILNRTNILAILMSLEISLFSISLNFLIFSVYLDDMIGQIFALFILTIAACESSIGLAIILVYYRVRGSIRIDQASLLKS 100
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match: A0A8F0FEY2_9PHAE (NADH dehydrogenase subunit 4L n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FEY2_9PHAE) HSP 1 Score: 130 bits (327), Expect = 1.970e-37 Identity = 70/93 (75.27%), Postives = 84/93 (90.32%), Query Frame = 1 Query: 22 FVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 300
FV +L+F IGVGGV+LNRTNI+ +LMSLE+AL SVSLNF+IFS L D+ GQIFA+FIL +AACESS+GLAIILVY+RVRGSIR+DQA+LLKS
Sbjct: 8 FVISLMFFIGVGGVVLNRTNILAILMSLEIALFSVSLNFLIFSVYLDDIMGQIFAVFILAVAACESSVGLAIILVYYRVRGSIRVDQAALLKS 100
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match: A0A4Y5T8D2_9PHAE (NADH dehydrogenase subunit 4L n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8D2_9PHAE) HSP 1 Score: 127 bits (318), Expect = 4.630e-36 Identity = 67/100 (67.00%), Postives = 85/100 (85.00%), Query Frame = 1 Query: 1 MDFIHFFFVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 300
M + ++++L+F IG+ GV+ NRTNI+ VLMSLE++L S+SLNF+IFS L D+ GQIFA+FIL +AACESSIGLAIILVY+RVRGSIR+DQASLLKS
Sbjct: 1 MSIVQLSYITSLMFFIGIAGVVFNRTNILAVLMSLEISLFSISLNFLIFSVYLDDIIGQIFALFILTVAACESSIGLAIILVYYRVRGSIRVDQASLLKS 100
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match: A0A7S6ZPE7_9STRA (Nad4L n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPE7_9STRA) HSP 1 Score: 114 bits (285), Expect = 4.900e-31 Identity = 56/100 (56.00%), Postives = 84/100 (84.00%), Query Frame = 1 Query: 1 MDFIHFFFVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLKS 300
M+F+ F ++T +F +G+GG++LNRTNI+++LMS+E++LL++ LNF+I S L D+ GQ+F +FIL +A CESSIGLAIIL Y+RVRG IR+++ASL+K+
Sbjct: 1 MEFLQFCLLTTAMFFLGIGGIVLNRTNILILLMSIEVSLLALGLNFLILSVYLDDILGQVFCLFILTVAGCESSIGLAIILAYYRVRGRIRMNEASLMKA 100
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match: UPI001A9736EA (NADH-quinone oxidoreductase subunit NuoK n=2 Tax=Acetobacteraceae TaxID=433 RepID=UPI001A9736EA) HSP 1 Score: 111 bits (277), Expect = 8.820e-30 Identity = 59/95 (62.11%), Postives = 78/95 (82.11%), Query Frame = 1 Query: 13 HFFFVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLK 297
H+ VS +LF++GV G+ LNR NI+V+LMS+EL LLSV+LNF+ FSA L DLTGQIFA+F+L +AA E++IGLAI+++YFR RGSI +D S LK
Sbjct: 8 HYLTVSAILFVLGVLGIFLNRKNIIVILMSVELILLSVNLNFVAFSATLQDLTGQIFAMFVLTVAAAEAAIGLAILVIYFRNRGSIEVDNVSTLK 102
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Match: A0A1Z8KZX0_9PROT (NADH-quinone oxidoreductase subunit K n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1Z8KZX0_9PROT) HSP 1 Score: 109 bits (273), Expect = 3.480e-29 Identity = 57/96 (59.38%), Postives = 79/96 (82.29%), Query Frame = 1 Query: 10 IHFFFVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSACLGDLTGQIFAIFILVIAACESSIGLAIILVYFRVRGSIRIDQASLLK 297
IH+ VS +LF +GV G+ NR N++V+LMS+EL LLSV++NF+ FSA LGDLTGQ+FA+FIL +AA E++IGLAI++VYFR RGSI ++ S++K
Sbjct: 6 IHYLVVSAILFTLGVIGIFANRRNVIVILMSIELILLSVNINFVAFSAYLGDLTGQVFAMFILTVAAAEAAIGLAILVVYFRNRGSIAVEDISMMK 101 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10134.141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10134.141.1 >prot_E-siliculosus-1a_F_contig10134.141.1 ID=prot_E-siliculosus-1a_F_contig10134.141.1|Name=mRNA_E-siliculosus-1a_F_contig10134.141.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=101bp MDFIHFFFVSTLLFIIGVGGVILNRTNIVVVLMSLELALLSVSLNFIIFSback to top mRNA from alignment at E-siliculosus-1a_F_contig10134:130..432- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10134.141.1 ID=mRNA_E-siliculosus-1a_F_contig10134.141.1|Name=mRNA_E-siliculosus-1a_F_contig10134.141.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=303bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10134:130..432- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10134:130..432- >mRNA_E-siliculosus-1a_F_contig10134.141.1 ID=mRNA_E-siliculosus-1a_F_contig10134.141.1|Name=mRNA_E-siliculosus-1a_F_contig10134.141.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10134:130..432- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |