mRNA_E-siliculosus-1a_F_contig10118.129.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Start	1
Stop	1
Cds size	378
Model size	751
Exons	3
Ec32 ortholog	Ec-11_002120.2
Ec32 ortholog description	Hypothetical protein
Hectar predicted targeting category	other localisation

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig10118.129.1	prot_E-siliculosus-1a_F_contig10118.129.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig10118 1505..2047 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927514.7128747-UTR-E-siliculosus-1a_F_contig10118:780..1075	1622927514.7128747-UTR-E-siliculosus-1a_F_contig10118:780..1075	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig10118 781..1075 -
1696318562.5139914-UTR-E-siliculosus-1a_F_contig10118:780..1075	1696318562.5139914-UTR-E-siliculosus-1a_F_contig10118:780..1075	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig10118 781..1075 -
1622927514.7255206-UTR-E-siliculosus-1a_F_contig10118:1426..1504	1622927514.7255206-UTR-E-siliculosus-1a_F_contig10118:1426..1504	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig10118 1427..1504 -
1696318562.5251598-UTR-E-siliculosus-1a_F_contig10118:1426..1504	1696318562.5251598-UTR-E-siliculosus-1a_F_contig10118:1426..1504	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig10118 1427..1504 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927514.7358196-CDS-E-siliculosus-1a_F_contig10118:1504..1573	1622927514.7358196-CDS-E-siliculosus-1a_F_contig10118:1504..1573	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig10118 1505..1573 -
1696318562.5349886-CDS-E-siliculosus-1a_F_contig10118:1504..1573	1696318562.5349886-CDS-E-siliculosus-1a_F_contig10118:1504..1573	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig10118 1505..1573 -
1622927514.7464826-CDS-E-siliculosus-1a_F_contig10118:1738..2047	1622927514.7464826-CDS-E-siliculosus-1a_F_contig10118:1738..2047	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig10118 1739..2047 -
1696318562.5565023-CDS-E-siliculosus-1a_F_contig10118:1738..2047	1696318562.5565023-CDS-E-siliculosus-1a_F_contig10118:1738..2047	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig10118 1739..2047 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig10118:781..2047-
coding sequence from alignment at E-siliculosus-1a_F_contig10118:781..2047-

protein sequence of mRNA_E-siliculosus-1a_F_contig10118.129.1

>prot_E-siliculosus-1a_F_contig10118.129.1 ID=prot_E-siliculosus-1a_F_contig10118.129.1|Name=mRNA_E-siliculosus-1a_F_contig10118.129.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=126bp
MLTRPGETATTYSSPIKSILELNHIPSLKVRSGRPLDQSNRLCSVPVPQS
ESLTCRDGCNSPSGWCRSFLASPTSSVGREEQQRAKVQHKIPSSAPMKEY
PKEDSDSAVGTLPAHYGHAGTCVRR*

mRNA from alignment at E-siliculosus-1a_F_contig10118:781..2047-

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig10118.129.1 ID=mRNA_E-siliculosus-1a_F_contig10118.129.1|Name=mRNA_E-siliculosus-1a_F_contig10118.129.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1267bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10118:781..2047- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTTACACGTCCGGGCGAAACCGCAACTACATACTCCTCGCCTATTAA
AAGCATTCTTGAGTTGAATCATATCCCTTCCCTGAAGGTTCGGTCGGGTC
GTCCTCTAGACCAGAGCAACCGTCTGTGTTCCGTACCCGTGCCACAGTCC
GAATCCCTTACTTGCAGGGATGGATGCAACTCCCCCTCGGGCTGGTGCCG
CTCGTTCCTTGCATCCCCTACGTCCTCCGTGGGTCGGGAAGAACAACAGA
GGGCAAAGGTTCAACACAAAATACCATCGTCAGCACCTATGAAGGAGTAC
CCGAAGGAGGTACGTGAGGCGTGTGTCATGTTGTTTGTTCCCGCTGCCGG
GATGTGATCGAAAAAACAAAATGCGGCGATGAGTCCTTTAGGTACGTAAC
CAGAACTACTGATATGTAGAGGTTAACCTTGGGTCTTTTGTATGTGTGTG
TGAACCGCCCGTCCTTCGTTCCAGGACTCGGACAGCGCTGTTGGCACCCT
CCCAGCCCACTACGGACACGCCGGCACGTGTGTCCGAAGATAAACGTCCG
GTTGTATTTTCCTCGAGTTGCATCATAGACCGGGCACTCGTGTGGGCACC
ACCACCTACTGGCATAGACAGGTGCAGACCTGGTGGGGAGAGGAAGGACG
TCGATTCTGGTCTGATGCAGAGTACGACAACACTCCTGGATCCCTTGGGG
TCGGTGTACGATGCAGAGTACGTATCGGGCAGTCGTTATTTTCTTCTAGG
AACTACTCTTGGGATGGTGATTCTCCATCCACGTTAAGGCATACCATGTC
CTTGCGCCGAAATCCAGTTGACCCAGAGTTCCTTGTTTTTGCCCAAAACC
ATTGCCACTCCATGGTCGATTAAAATGATTCGAGATCGCCTAGGGTATAC
ACGGCGATTTTTTTATCACGCCAAACGTATTCTTACCGCCCGATGCCGTC
TGCCATGATTGTGCTGTTGAAGAACGTGTCTGGCAGTGCGATGCGGGCCT
GCAACAGCGCGAACGCAAAGCTGGTGGCGAGAGGCTAGGGCGTACTATTT
TGTTTGCGTGTGCCGGGTATGATCTTGTGGTGCTCGCCGCGGTTGTTGTT
GTTGTGTGGTTCGACTCCTTACGCTGTTCTACGTGTTTCCTGCGAAACAC
ATCGGCCAAGTATCAGCGAAAGGCGGGTGGTGCAATAGAGCGAAGAGCGA
AGAGCAGCAGGCTGTGCCTACCGGAGTGACGTTTTCAGCGACCAAGTTTA
CTCGAGATGGCCACTGG

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10118:781..2047-

>mRNA_E-siliculosus-1a_F_contig10118.129.1 ID=mRNA_E-siliculosus-1a_F_contig10118.129.1|Name=mRNA_E-siliculosus-1a_F_contig10118.129.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=756bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10118:781..2047- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTTACACGTCCGGGCGAAACCGCAACTACATACTCCTCGCCTATTAA
AAGCATTCTTGAGTTGAATCATATCCCTTCCCTGAAGGTTCGGTCGGGTC
GTCCTCTAGACCAGAGCAACCGTCTGTGTTCCGTACCCGTGCCACAGTCC
GAATCCCTTACTTGCAGGGATGGATGCAACTCCCCCTCGGGCTGGTGCCG
CTCGTTCCTTGCATCCCCTACGTCCTCCGTGGGTCGGGAAGAACAACAGA
GGGCAAAGGTTCAACACAAAATACCATCGTCAGCACCTATGAAGGAGTAC
CCGAAGGAGATGCTTACACGTCCGGGCGAAACCGCAACTACATACTCCTC
GCCTATTAAAAGCATTCTTGAGTTGAATCATATCCCTTCCCTGAAGGTTC
GGTCGGGTCGTCCTCTAGACCAGAGCAACCGTCTGTGTTCCGTACCCGTG
CCACAGTCCGAATCCCTTACTTGCAGGGATGGATGCAACTCCCCCTCGGG
CTGGTGCCGCTCGTTCCTTGCATCCCCTACGTCCTCCGTGGGTCGGGAAG
AACAACAGAGGGCAAAGGTTCAACACAAAATACCATCGTCAGCACCTATG
AAGGAGTACCCGAAGGAGGACTCGGACAGCGCTGTTGGCACCCTCCCAGC
CCACTACGGACACGCCGGCACGTGTGTCCGAAGATAAGACTCGGACAGCG
CTGTTGGCACCCTCCCAGCCCACTACGGACACGCCGGCACGTGTGTCCGA
AGATAA

mRNA_E-siliculosus-1a_F_contig10118.129.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

ZOOM

x 1

POSITION

0