mRNA_E-siliculosus-1a_F_contig10118.129.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10118.129.1
Unique NamemRNA_E-siliculosus-1a_F_contig10118.129.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10118.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10118contigE-siliculosus-1a_F_contig10118:781..2047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size378
Model size751
Exons3
Ec32 orthologEc-11_002120.2
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10118.129.1prot_E-siliculosus-1a_F_contig10118.129.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10118 1505..2047 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927514.7128747-UTR-E-siliculosus-1a_F_contig10118:780..10751622927514.7128747-UTR-E-siliculosus-1a_F_contig10118:780..1075Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10118 781..1075 -
1696318562.5139914-UTR-E-siliculosus-1a_F_contig10118:780..10751696318562.5139914-UTR-E-siliculosus-1a_F_contig10118:780..1075Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10118 781..1075 -
1622927514.7255206-UTR-E-siliculosus-1a_F_contig10118:1426..15041622927514.7255206-UTR-E-siliculosus-1a_F_contig10118:1426..1504Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10118 1427..1504 -
1696318562.5251598-UTR-E-siliculosus-1a_F_contig10118:1426..15041696318562.5251598-UTR-E-siliculosus-1a_F_contig10118:1426..1504Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10118 1427..1504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927514.7358196-CDS-E-siliculosus-1a_F_contig10118:1504..15731622927514.7358196-CDS-E-siliculosus-1a_F_contig10118:1504..1573Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10118 1505..1573 -
1696318562.5349886-CDS-E-siliculosus-1a_F_contig10118:1504..15731696318562.5349886-CDS-E-siliculosus-1a_F_contig10118:1504..1573Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10118 1505..1573 -
1622927514.7464826-CDS-E-siliculosus-1a_F_contig10118:1738..20471622927514.7464826-CDS-E-siliculosus-1a_F_contig10118:1738..2047Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10118 1739..2047 -
1696318562.5565023-CDS-E-siliculosus-1a_F_contig10118:1738..20471696318562.5565023-CDS-E-siliculosus-1a_F_contig10118:1738..2047Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10118 1739..2047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10118.129.1

>prot_E-siliculosus-1a_F_contig10118.129.1 ID=prot_E-siliculosus-1a_F_contig10118.129.1|Name=mRNA_E-siliculosus-1a_F_contig10118.129.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=126bp
MLTRPGETATTYSSPIKSILELNHIPSLKVRSGRPLDQSNRLCSVPVPQS
ESLTCRDGCNSPSGWCRSFLASPTSSVGREEQQRAKVQHKIPSSAPMKEY
PKEDSDSAVGTLPAHYGHAGTCVRR*
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mRNA from alignment at E-siliculosus-1a_F_contig10118:781..2047-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10118.129.1 ID=mRNA_E-siliculosus-1a_F_contig10118.129.1|Name=mRNA_E-siliculosus-1a_F_contig10118.129.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1267bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10118:781..2047- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTTACACGTCCGGGCGAAACCGCAACTACATACTCCTCGCCTATTAA
AAGCATTCTTGAGTTGAATCATATCCCTTCCCTGAAGGTTCGGTCGGGTC
GTCCTCTAGACCAGAGCAACCGTCTGTGTTCCGTACCCGTGCCACAGTCC
GAATCCCTTACTTGCAGGGATGGATGCAACTCCCCCTCGGGCTGGTGCCG
CTCGTTCCTTGCATCCCCTACGTCCTCCGTGGGTCGGGAAGAACAACAGA
GGGCAAAGGTTCAACACAAAATACCATCGTCAGCACCTATGAAGGAGTAC
CCGAAGGAGGTACGTGAGGCGTGTGTCATGTTGTTTGTTCCCGCTGCCGG
GATGTGATCGAAAAAACAAAATGCGGCGATGAGTCCTTTAGGTACGTAAC
CAGAACTACTGATATGTAGAGGTTAACCTTGGGTCTTTTGTATGTGTGTG
TGAACCGCCCGTCCTTCGTTCCAGGACTCGGACAGCGCTGTTGGCACCCT
CCCAGCCCACTACGGACACGCCGGCACGTGTGTCCGAAGATAAACGTCCG
GTTGTATTTTCCTCGAGTTGCATCATAGACCGGGCACTCGTGTGGGCACC
ACCACCTACTGGCATAGACAGGTGCAGACCTGGTGGGGAGAGGAAGGACG
TCGATTCTGGTCTGATGCAGAGTACGACAACACTCCTGGATCCCTTGGGG
TCGGTGTACGATGCAGAGTACGTATCGGGCAGTCGTTATTTTCTTCTAGG
AACTACTCTTGGGATGGTGATTCTCCATCCACGTTAAGGCATACCATGTC
CTTGCGCCGAAATCCAGTTGACCCAGAGTTCCTTGTTTTTGCCCAAAACC
ATTGCCACTCCATGGTCGATTAAAATGATTCGAGATCGCCTAGGGTATAC
ACGGCGATTTTTTTATCACGCCAAACGTATTCTTACCGCCCGATGCCGTC
TGCCATGATTGTGCTGTTGAAGAACGTGTCTGGCAGTGCGATGCGGGCCT
GCAACAGCGCGAACGCAAAGCTGGTGGCGAGAGGCTAGGGCGTACTATTT
TGTTTGCGTGTGCCGGGTATGATCTTGTGGTGCTCGCCGCGGTTGTTGTT
GTTGTGTGGTTCGACTCCTTACGCTGTTCTACGTGTTTCCTGCGAAACAC
ATCGGCCAAGTATCAGCGAAAGGCGGGTGGTGCAATAGAGCGAAGAGCGA
AGAGCAGCAGGCTGTGCCTACCGGAGTGACGTTTTCAGCGACCAAGTTTA
CTCGAGATGGCCACTGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10118:781..2047-

>mRNA_E-siliculosus-1a_F_contig10118.129.1 ID=mRNA_E-siliculosus-1a_F_contig10118.129.1|Name=mRNA_E-siliculosus-1a_F_contig10118.129.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=756bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10118:781..2047- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTTACACGTCCGGGCGAAACCGCAACTACATACTCCTCGCCTATTAA
AAGCATTCTTGAGTTGAATCATATCCCTTCCCTGAAGGTTCGGTCGGGTC
GTCCTCTAGACCAGAGCAACCGTCTGTGTTCCGTACCCGTGCCACAGTCC
GAATCCCTTACTTGCAGGGATGGATGCAACTCCCCCTCGGGCTGGTGCCG
CTCGTTCCTTGCATCCCCTACGTCCTCCGTGGGTCGGGAAGAACAACAGA
GGGCAAAGGTTCAACACAAAATACCATCGTCAGCACCTATGAAGGAGTAC
CCGAAGGAGATGCTTACACGTCCGGGCGAAACCGCAACTACATACTCCTC
GCCTATTAAAAGCATTCTTGAGTTGAATCATATCCCTTCCCTGAAGGTTC
GGTCGGGTCGTCCTCTAGACCAGAGCAACCGTCTGTGTTCCGTACCCGTG
CCACAGTCCGAATCCCTTACTTGCAGGGATGGATGCAACTCCCCCTCGGG
CTGGTGCCGCTCGTTCCTTGCATCCCCTACGTCCTCCGTGGGTCGGGAAG
AACAACAGAGGGCAAAGGTTCAACACAAAATACCATCGTCAGCACCTATG
AAGGAGTACCCGAAGGAGGACTCGGACAGCGCTGTTGGCACCCTCCCAGC
CCACTACGGACACGCCGGCACGTGTGTCCGAAGATAAGACTCGGACAGCG
CTGTTGGCACCCTCCCAGCCCACTACGGACACGCCGGCACGTGTGTCCGA
AGATAA
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