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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10801.564.1 vs. uniprot
Match: D8LLA7_ECTSI (RNA polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA7_ECTSI) HSP 1 Score: 303 bits (777), Expect = 1.840e-98 Identity = 160/173 (92.49%), Postives = 163/173 (94.22%), Query Frame = 1 Query: 1 MSSWSRLRPRPRSWCFGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASSRLLLLEVDAETATPAGNPQSRPTSDAWCARSVAGNALRGACPGHDRLPGGRRHRGCSSRLGAVGTAAPISEVVVGVGGAAGPAVLRESPRVRKASKQEVRAMTRGLNSITAFAAYG 519
MSS SRLRPRPRSWC GSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSAS RLLLLEV+AETATPA NPQSRPTSDAWCARSVAGNALRGACPGHDRLP GRRHRGCSSRLGAVGTAAP SEVVVGVGGAAGPAVL S RVRKAS QEVRA+TRGLNSIT+FAAYG
Sbjct: 1 MSSRSRLRPRPRSWCSGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASERLLLLEVEAETATPARNPQSRPTSDAWCARSVAGNALRGACPGHDRLPRGRRHRGCSSRLGAVGTAAP-SEVVVGVGGAAGPAVLGASARVRKASNQEVRAVTRGLNSITSFAAYG 172
BLAST of mRNA_E-siliculosus-1a_F_contig10801.564.1 vs. uniprot
Match: A0A6H5KNQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ9_9PHAE) HSP 1 Score: 268 bits (686), Expect = 9.500e-86 Identity = 148/173 (85.55%), Postives = 153/173 (88.44%), Query Frame = 1 Query: 1 MSSWSRLRPRPRSWCFGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASSRLLLLEVDAETATPAGNPQSRPTSDAWCARSVAGNALRGACPGHDRLPGGRRHRGCSSRLGAVGTAAPISEVVVGVGGAAGPAVLRESPRVRKASKQEVRAMTRGLNSITAFAAYG 519
MSS SRLRPRPRSW GSARFLLSVAAIVRSGLHIATDAFTLPSGAG PPR+ SAS RLLL EV+AETA PA NPQSRPTSDAWCARSVAGNALR ACPGHDR PGGRRHRG SSRLGAVGTA SEVVVG+GGAA PA+L S R RKASKQEVRAMTRGLNSIT+FAAYG
Sbjct: 1 MSSRSRLRPRPRSWFVGSARFLLSVAAIVRSGLHIATDAFTLPSGAGRPPRNGSASERLLL-EVEAETAPPARNPQSRPTSDAWCARSVAGNALRCACPGHDRQPGGRRHRGFSSRLGAVGTAP--SEVVVGLGGAARPALLGASARARKASKQEVRAMTRGLNSITSFAAYG 170
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 522 |
| Model size | 522 |
| Exons | 2 |
| Ec32 ortholog | Ec-27_001910.1 |
| Ec32 ortholog description | RNA polymerase sigma-70 region 2 |
| Hectar predicted targeting category | mitochondrion |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | K |
| EggNOG OGs | 2QVXR@2759,COG0568@1 |
| EggNOG free text desc. | sigma factor activity |
| Seed eggNOG ortholog | 2880.D8LLA7 |
| Seed ortholog evalue | 2.8e-80 |
| Seed ortholog score | 304.7 |
| Taxonomic scope | Eukaryota |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10801.564.1 >prot_E-siliculosus-1a_F_contig10801.564.1 ID=prot_E-siliculosus-1a_F_contig10801.564.1|Name=mRNA_E-siliculosus-1a_F_contig10801.564.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=174bp
MSSWSRLRPRPRSWCFGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPP
RSRSASSRLLLLEVDAETATPAGNPQSRPTSDAWCARSVAGNALRGACPG
HDRLPGGRRHRGCSSRLGAVGTAAPISEVVVGVGGAAGPAVLRESPRVRK
ASKQEVRAMTRGLNSITAFAAYG* back to topmRNA from alignment at E-siliculosus-1a_F_contig10801:542..1502- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10801.564.1 ID=mRNA_E-siliculosus-1a_F_contig10801.564.1|Name=mRNA_E-siliculosus-1a_F_contig10801.564.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=961bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10801:542..1502- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCCTCGTGGTCTCGACTCCGCCCGAGACCGCGGTCGTGGTGCTTCGG
TAGCGCCCGGTTTCTACTGTCAGGTACGCGAGGGATGAGGCACTCATGGA
TGGGGCGAAATGATGATGTGTCTGTCTTTTGCCTCAAGCTTTCTGCGCGG
AAAGGGTCGGGTGATGGGGGGTGTGTTCATGCCGGAAAGCGTTGGGTTCG
GGCAGGGGAATTCGACGTTGCTTTTCTTTAAACGCTGCCCCTACGCCCCT
ACCACCTGAGTCAGGGCGGGTGGACCGACAGGTGTGCCCGAGGTCCGAGC
CAGCGATGGTGCGGTGCCAAACAAAACCAAAACATCACGCACCGCGCCTT
CTGACAGCTTCTAGGCCAATCTCAGTTCCTCTCTCAGAACAAGTAAAACC
GTGTTTTTGAACACGATCTCAAATCAACCAGACCAGAGAGGTCGAGCTCA
TGATGCTCATCAGTTTCGCCGCCTCGTGCATTCCTGCGGCAAACCCTCCC
ACCCAATCGCAGTGGCTGCGATCGTTCGGAGTGGGCTGCACATCGCCACG
GACGCCTTCACCCTTCCCTCCGGTGCCGGACACCCGCCTCGCAGCCGCAG
CGCGTCGTCGCGCCTCCTTCTTCTTGAAGTAGACGCCGAGACGGCTACTC
CGGCTGGCAACCCTCAGTCTCGACCAACGAGCGACGCCTGGTGCGCTCGT
TCTGTAGCGGGAAACGCGTTACGCGGCGCGTGTCCTGGGCATGATCGGCT
GCCTGGCGGCAGGCGGCATAGGGGCTGCTCTTCTCGGCTTGGTGCCGTAG
GAACTGCTGCTCCTATTAGCGAGGTGGTGGTTGGGGTTGGCGGGGCCGCG
GGGCCGGCTGTGCTGAGGGAGTCGCCCAGGGTCAGGAAGGCGAGCAAGCA
GGAGGTGCGAGCCATGACGAGGGGGCTCAACAGCATCACGGCGTTCGCCG
CGTACGGGTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10801:542..1502- >mRNA_E-siliculosus-1a_F_contig10801.564.1 ID=mRNA_E-siliculosus-1a_F_contig10801.564.1|Name=mRNA_E-siliculosus-1a_F_contig10801.564.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1044bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10801:542..1502- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCCTCGTGGTCTCGACTCCGCCCGAGACCGCGGTCGTGGTGCTTCGG
TAGCGCCCGGTTTCTACTGTCAGATGTCCTCGTGGTCTCGACTCCGCCCG
AGACCGCGGTCGTGGTGCTTCGGTAGCGCCCGGTTTCTACTGTCAGTGGC
TGCGATCGTTCGGAGTGGGCTGCACATCGCCACGGACGCCTTCACCCTTC
CCTCCGGTGCCGGACACCCGCCTCGCAGCCGCAGCGCGTCGTCGCGCCTC
CTTCTTCTTGAAGTAGACGCCGAGACGGCTACTCCGGCTGGCAACCCTCA
GTCTCGACCAACGAGCGACGCCTGGTGCGCTCGTTCTGTAGCGGGAAACG
CGTTACGCGGCGCGTGTCCTGGGCATGATCGGCTGCCTGGCGGCAGGCGG
CATAGGGGCTGCTCTTCTCGGCTTGGTGCCGTAGGAACTGCTGCTCCTAT
TAGCGAGGTGGTGGTTGGGGTTGGCGGGGCCGCGGGGCCGGCTGTGCTGA
GGGAGTCGCCCAGGGTCAGGAAGGCGAGCAAGCAGGAGGTGCGAGCCATG
ACGAGGGGGCTCAACAGCATCACGGCGTTCGCCGCGTACGGGTGATGGCT
GCGATCGTTCGGAGTGGGCTGCACATCGCCACGGACGCCTTCACCCTTCC
CTCCGGTGCCGGACACCCGCCTCGCAGCCGCAGCGCGTCGTCGCGCCTCC
TTCTTCTTGAAGTAGACGCCGAGACGGCTACTCCGGCTGGCAACCCTCAG
TCTCGACCAACGAGCGACGCCTGGTGCGCTCGTTCTGTAGCGGGAAACGC
GTTACGCGGCGCGTGTCCTGGGCATGATCGGCTGCCTGGCGGCAGGCGGC
ATAGGGGCTGCTCTTCTCGGCTTGGTGCCGTAGGAACTGCTGCTCCTATT
AGCGAGGTGGTGGTTGGGGTTGGCGGGGCCGCGGGGCCGGCTGTGCTGAG
GGAGTCGCCCAGGGTCAGGAAGGCGAGCAAGCAGGAGGTGCGAGCCATGA
CGAGGGGGCTCAACAGCATCACGGCGTTCGCCGCGTACGGGTGA back to top
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