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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10801.564.1 vs. uniprot
Match: D8LLA7_ECTSI (RNA polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA7_ECTSI) HSP 1 Score: 303 bits (777), Expect = 1.840e-98 Identity = 160/173 (92.49%), Postives = 163/173 (94.22%), Query Frame = 0 Query: 1 MSSWSRLRPRPRSWCFGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASSRLLLLEVDAETATPAGNPQSRPTSDAWCARSVAGNALRGACPGHDRLPGGRRHRGCSSRLGAVGTAAPISEVVVGVGGAAGPAVLRESPRVRKASKQEVRAMTRGLNSITAFAAYG 173
MSS SRLRPRPRSWC GSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSAS RLLLLEV+AETATPA NPQSRPTSDAWCARSVAGNALRGACPGHDRLP GRRHRGCSSRLGAVGTAAP SEVVVGVGGAAGPAVL S RVRKAS QEVRA+TRGLNSIT+FAAYG
Sbjct: 1 MSSRSRLRPRPRSWCSGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASERLLLLEVEAETATPARNPQSRPTSDAWCARSVAGNALRGACPGHDRLPRGRRHRGCSSRLGAVGTAAP-SEVVVGVGGAAGPAVLGASARVRKASNQEVRAVTRGLNSITSFAAYG 172
BLAST of mRNA_E-siliculosus-1a_F_contig10801.564.1 vs. uniprot
Match: A0A6H5KNQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ9_9PHAE) HSP 1 Score: 268 bits (686), Expect = 9.500e-86 Identity = 148/173 (85.55%), Postives = 153/173 (88.44%), Query Frame = 0 Query: 1 MSSWSRLRPRPRSWCFGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASSRLLLLEVDAETATPAGNPQSRPTSDAWCARSVAGNALRGACPGHDRLPGGRRHRGCSSRLGAVGTAAPISEVVVGVGGAAGPAVLRESPRVRKASKQEVRAMTRGLNSITAFAAYG 173
MSS SRLRPRPRSW GSARFLLSVAAIVRSGLHIATDAFTLPSGAG PPR+ SAS RLLL EV+AETA PA NPQSRPTSDAWCARSVAGNALR ACPGHDR PGGRRHRG SSRLGAVGTA SEVVVG+GGAA PA+L S R RKASKQEVRAMTRGLNSIT+FAAYG
Sbjct: 1 MSSRSRLRPRPRSWFVGSARFLLSVAAIVRSGLHIATDAFTLPSGAGRPPRNGSASERLLL-EVEAETAPPARNPQSRPTSDAWCARSVAGNALRCACPGHDRQPGGRRHRGFSSRLGAVGTAP--SEVVVGLGGAARPALLGASARARKASKQEVRAMTRGLNSITSFAAYG 170
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10801.564.1 vs. uniprot
Analysis Date: 2022-09-16 ( Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match Name | E-value | Identity | Description | |
D8LLA7_ECTSI | 1.840e-98 | 92.49 | RNA polymerase sigma factor n=1 Tax=Ectocarpus sil... | [more] |
A0A6H5KNQ9_9PHAE | 9.500e-86 | 85.55 | Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... | [more] |
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE_H_REGION | Signal peptide H-region | coord: 15..26 |
None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 32..173 |
None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE_N_REGION | Signal peptide N-region | coord: 1..14 |
None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE_C_REGION | Signal peptide C-region | coord: 27..31 |
None | No IPR available | PHOBIUS | SIGNAL_PEPTIDE | Signal Peptide | coord: 1..31 |
None | No IPR available | SIGNALP_EUK | SignalP-noTM | SignalP-noTM | coord: 1..27 score: 0.519 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_E-siliculosus-1a_F_contig10801.564.1 ID=prot_E-siliculosus-1a_F_contig10801.564.1|Name=mRNA_E-siliculosus-1a_F_contig10801.564.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=174bp MSSWSRLRPRPRSWCFGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPP RSRSASSRLLLLEVDAETATPAGNPQSRPTSDAWCARSVAGNALRGACPG HDRLPGGRRHRGCSSRLGAVGTAAPISEVVVGVGGAAGPAVLRESPRVRK ASKQEVRAMTRGLNSITAFAAYG* back to top
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