mRNA_E-siliculosus-1a_F_contig10801.564.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10801.564.1
Unique NamemRNA_E-siliculosus-1a_F_contig10801.564.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10801.564.1 vs. uniprot
Match: D8LLA7_ECTSI (RNA polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA7_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 1.840e-98
Identity = 160/173 (92.49%), Postives = 163/173 (94.22%), Query Frame = 1 
Query:    1 MSSWSRLRPRPRSWCFGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASSRLLLLEVDAETATPAGNPQSRPTSDAWCARSVAGNALRGACPGHDRLPGGRRHRGCSSRLGAVGTAAPISEVVVGVGGAAGPAVLRESPRVRKASKQEVRAMTRGLNSITAFAAYG 519
            MSS SRLRPRPRSWC GSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSAS RLLLLEV+AETATPA NPQSRPTSDAWCARSVAGNALRGACPGHDRLP GRRHRGCSSRLGAVGTAAP SEVVVGVGGAAGPAVL  S RVRKAS QEVRA+TRGLNSIT+FAAYG
Sbjct:    1 MSSRSRLRPRPRSWCSGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASERLLLLEVEAETATPARNPQSRPTSDAWCARSVAGNALRGACPGHDRLPRGRRHRGCSSRLGAVGTAAP-SEVVVGVGGAAGPAVLGASARVRKASNQEVRAVTRGLNSITSFAAYG 172
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BLAST of mRNA_E-siliculosus-1a_F_contig10801.564.1 vs. uniprot
Match: A0A6H5KNQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ9_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 9.500e-86
Identity = 148/173 (85.55%), Postives = 153/173 (88.44%), Query Frame = 1 
Query:    1 MSSWSRLRPRPRSWCFGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPPRSRSASSRLLLLEVDAETATPAGNPQSRPTSDAWCARSVAGNALRGACPGHDRLPGGRRHRGCSSRLGAVGTAAPISEVVVGVGGAAGPAVLRESPRVRKASKQEVRAMTRGLNSITAFAAYG 519
            MSS SRLRPRPRSW  GSARFLLSVAAIVRSGLHIATDAFTLPSGAG PPR+ SAS RLLL EV+AETA PA NPQSRPTSDAWCARSVAGNALR ACPGHDR PGGRRHRG SSRLGAVGTA   SEVVVG+GGAA PA+L  S R RKASKQEVRAMTRGLNSIT+FAAYG
Sbjct:    1 MSSRSRLRPRPRSWFVGSARFLLSVAAIVRSGLHIATDAFTLPSGAGRPPRNGSASERLLL-EVEAETAPPARNPQSRPTSDAWCARSVAGNALRCACPGHDRQPGGRRHRGFSSRLGAVGTAP--SEVVVGLGGAARPALLGASARARKASKQEVRAMTRGLNSITSFAAYG 170
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10801.564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLA7_ECTSI1.840e-9892.49RNA polymerase sigma factor n=1 Tax=Ectocarpus sil... [more]
A0A6H5KNQ9_9PHAE9.500e-8685.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10801contigE-siliculosus-1a_F_contig10801:542..1502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size522
Model size522
Exons2
Ec32 orthologEc-27_001910.1
Ec32 ortholog descriptionRNA polymerase sigma-70 region 2
Hectar predicted targeting categorymitochondrion
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.K
EggNOG OGs2QVXR@2759,COG0568@1
EggNOG free text desc.sigma factor activity
Seed eggNOG ortholog2880.D8LLA7
Seed ortholog evalue2.8e-80
Seed ortholog score304.7
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927582.7277982-CDS-E-siliculosus-1a_F_contig10801:541..9901622927582.7277982-CDS-E-siliculosus-1a_F_contig10801:541..990Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10801 542..990 -
1696318597.1651735-CDS-E-siliculosus-1a_F_contig10801:541..9901696318597.1651735-CDS-E-siliculosus-1a_F_contig10801:541..990Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10801 542..990 -
1622927582.7381287-CDS-E-siliculosus-1a_F_contig10801:1429..15021622927582.7381287-CDS-E-siliculosus-1a_F_contig10801:1429..1502Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10801 1430..1502 -
1696318597.1764684-CDS-E-siliculosus-1a_F_contig10801:1429..15021696318597.1764684-CDS-E-siliculosus-1a_F_contig10801:1429..1502Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10801 1430..1502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10801.564.1prot_E-siliculosus-1a_F_contig10801.564.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10801 542..1502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10801.564.1

>prot_E-siliculosus-1a_F_contig10801.564.1 ID=prot_E-siliculosus-1a_F_contig10801.564.1|Name=mRNA_E-siliculosus-1a_F_contig10801.564.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=174bp
MSSWSRLRPRPRSWCFGSARFLLSVAAIVRSGLHIATDAFTLPSGAGHPP
RSRSASSRLLLLEVDAETATPAGNPQSRPTSDAWCARSVAGNALRGACPG
HDRLPGGRRHRGCSSRLGAVGTAAPISEVVVGVGGAAGPAVLRESPRVRK
ASKQEVRAMTRGLNSITAFAAYG*
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mRNA from alignment at E-siliculosus-1a_F_contig10801:542..1502-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10801.564.1 ID=mRNA_E-siliculosus-1a_F_contig10801.564.1|Name=mRNA_E-siliculosus-1a_F_contig10801.564.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=961bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10801:542..1502- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCCTCGTGGTCTCGACTCCGCCCGAGACCGCGGTCGTGGTGCTTCGG
TAGCGCCCGGTTTCTACTGTCAGGTACGCGAGGGATGAGGCACTCATGGA
TGGGGCGAAATGATGATGTGTCTGTCTTTTGCCTCAAGCTTTCTGCGCGG
AAAGGGTCGGGTGATGGGGGGTGTGTTCATGCCGGAAAGCGTTGGGTTCG
GGCAGGGGAATTCGACGTTGCTTTTCTTTAAACGCTGCCCCTACGCCCCT
ACCACCTGAGTCAGGGCGGGTGGACCGACAGGTGTGCCCGAGGTCCGAGC
CAGCGATGGTGCGGTGCCAAACAAAACCAAAACATCACGCACCGCGCCTT
CTGACAGCTTCTAGGCCAATCTCAGTTCCTCTCTCAGAACAAGTAAAACC
GTGTTTTTGAACACGATCTCAAATCAACCAGACCAGAGAGGTCGAGCTCA
TGATGCTCATCAGTTTCGCCGCCTCGTGCATTCCTGCGGCAAACCCTCCC
ACCCAATCGCAGTGGCTGCGATCGTTCGGAGTGGGCTGCACATCGCCACG
GACGCCTTCACCCTTCCCTCCGGTGCCGGACACCCGCCTCGCAGCCGCAG
CGCGTCGTCGCGCCTCCTTCTTCTTGAAGTAGACGCCGAGACGGCTACTC
CGGCTGGCAACCCTCAGTCTCGACCAACGAGCGACGCCTGGTGCGCTCGT
TCTGTAGCGGGAAACGCGTTACGCGGCGCGTGTCCTGGGCATGATCGGCT
GCCTGGCGGCAGGCGGCATAGGGGCTGCTCTTCTCGGCTTGGTGCCGTAG
GAACTGCTGCTCCTATTAGCGAGGTGGTGGTTGGGGTTGGCGGGGCCGCG
GGGCCGGCTGTGCTGAGGGAGTCGCCCAGGGTCAGGAAGGCGAGCAAGCA
GGAGGTGCGAGCCATGACGAGGGGGCTCAACAGCATCACGGCGTTCGCCG
CGTACGGGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10801:542..1502-

>mRNA_E-siliculosus-1a_F_contig10801.564.1 ID=mRNA_E-siliculosus-1a_F_contig10801.564.1|Name=mRNA_E-siliculosus-1a_F_contig10801.564.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1044bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10801:542..1502- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCCTCGTGGTCTCGACTCCGCCCGAGACCGCGGTCGTGGTGCTTCGG
TAGCGCCCGGTTTCTACTGTCAGATGTCCTCGTGGTCTCGACTCCGCCCG
AGACCGCGGTCGTGGTGCTTCGGTAGCGCCCGGTTTCTACTGTCAGTGGC
TGCGATCGTTCGGAGTGGGCTGCACATCGCCACGGACGCCTTCACCCTTC
CCTCCGGTGCCGGACACCCGCCTCGCAGCCGCAGCGCGTCGTCGCGCCTC
CTTCTTCTTGAAGTAGACGCCGAGACGGCTACTCCGGCTGGCAACCCTCA
GTCTCGACCAACGAGCGACGCCTGGTGCGCTCGTTCTGTAGCGGGAAACG
CGTTACGCGGCGCGTGTCCTGGGCATGATCGGCTGCCTGGCGGCAGGCGG
CATAGGGGCTGCTCTTCTCGGCTTGGTGCCGTAGGAACTGCTGCTCCTAT
TAGCGAGGTGGTGGTTGGGGTTGGCGGGGCCGCGGGGCCGGCTGTGCTGA
GGGAGTCGCCCAGGGTCAGGAAGGCGAGCAAGCAGGAGGTGCGAGCCATG
ACGAGGGGGCTCAACAGCATCACGGCGTTCGCCGCGTACGGGTGATGGCT
GCGATCGTTCGGAGTGGGCTGCACATCGCCACGGACGCCTTCACCCTTCC
CTCCGGTGCCGGACACCCGCCTCGCAGCCGCAGCGCGTCGTCGCGCCTCC
TTCTTCTTGAAGTAGACGCCGAGACGGCTACTCCGGCTGGCAACCCTCAG
TCTCGACCAACGAGCGACGCCTGGTGCGCTCGTTCTGTAGCGGGAAACGC
GTTACGCGGCGCGTGTCCTGGGCATGATCGGCTGCCTGGCGGCAGGCGGC
ATAGGGGCTGCTCTTCTCGGCTTGGTGCCGTAGGAACTGCTGCTCCTATT
AGCGAGGTGGTGGTTGGGGTTGGCGGGGCCGCGGGGCCGGCTGTGCTGAG
GGAGTCGCCCAGGGTCAGGAAGGCGAGCAAGCAGGAGGTGCGAGCCATGA
CGAGGGGGCTCAACAGCATCACGGCGTTCGCCGCGTACGGGTGA
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