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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1079.551.1 vs. uniprot
Match: D7FU66_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU66_ECTSI) HSP 1 Score: 103 bits (257), Expect = 3.830e-27 Identity = 65/84 (77.38%), Postives = 66/84 (78.57%), Query Frame = 1 Query: 1 MRTSSDSSARDGDLAREEGRGSMGGSSRRRRRGSSARTLAAGLALTLAACSTPAYGPQGASFSRACGPDSVYTRTTTPGAETIL 252
MRTSS SARDG LAREEG GSMGGSSRRRRRGSSARTLAAGLALTLAACSTPAYG + SVYTRTT P AETIL
Sbjct: 1 MRTSS-GSARDGGLAREEGTGSMGGSSRRRRRGSSARTLAAGLALTLAACSTPAYGSKAYHALERAAQASVYTRTTAPAAETIL 83
BLAST of mRNA_E-siliculosus-1a_F_contig1079.551.1 vs. uniprot
Match: A0A6H5LE70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE70_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.690e-16 Identity = 48/53 (90.57%), Postives = 48/53 (90.57%), Query Frame = 1 Query: 10 SSDSSARDGDLAREEGRGSMGGSSRRRRRGSSARTLAAGLALTLAACSTPAYG 168
SSDSSARDG LAREEGRGSMGGSSR GSSARTLAAGLALTLAACSTPAYG
Sbjct: 3 SSDSSARDGGLAREEGRGSMGGSSRXXXXGSSARTLAAGLALTLAACSTPAYG 55
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 273 |
| Model size | 273 |
| Exons | 2 |
| Ec32 ortholog | Ec-13_003540.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | signal anchor |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927579.9454188-CDS-E-siliculosus-1a_F_contig1079:13624..13730 | 1622927579.9454188-CDS-E-siliculosus-1a_F_contig1079:13624..13730 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1079 13625..13730 - |
| 1696318595.454289-CDS-E-siliculosus-1a_F_contig1079:13624..13730 | 1696318595.454289-CDS-E-siliculosus-1a_F_contig1079:13624..13730 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1079 13625..13730 - |
| 1622927579.9617562-CDS-E-siliculosus-1a_F_contig1079:14151..14318 | 1622927579.9617562-CDS-E-siliculosus-1a_F_contig1079:14151..14318 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1079 14152..14318 - |
| 1696318595.4682808-CDS-E-siliculosus-1a_F_contig1079:14151..14318 | 1696318595.4682808-CDS-E-siliculosus-1a_F_contig1079:14151..14318 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1079 14152..14318 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1079.551.1 >prot_E-siliculosus-1a_F_contig1079.551.1 ID=prot_E-siliculosus-1a_F_contig1079.551.1|Name=mRNA_E-siliculosus-1a_F_contig1079.551.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=91bp
MRTSSDSSARDGDLAREEGRGSMGGSSRRRRRGSSARTLAAGLALTLAAC
STPAYGPQGASFSRACGPDSVYTRTTTPGAETILVWSLSI* back to topmRNA from alignment at E-siliculosus-1a_F_contig1079:13625..14318- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1079.551.1 ID=mRNA_E-siliculosus-1a_F_contig1079.551.1|Name=mRNA_E-siliculosus-1a_F_contig1079.551.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=694bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1079:13625..14318- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGGACGAGCAGCGACAGCAGTGCTCGAGACGGGGACTTGGCGAGGGA
GGAAGGGAGGGGAAGCATGGGTGGCAGCAGCAGGAGAAGGAGGAGAGGAT
CCAGCGCGAGGACGCTGGCGGCCGGGCTGGCGTTGACCCTGGCCGCCTGC
TCGACTCCGGCGTACGGGTGAGAGAGACGAGCGAGCAAGATTCGGTTTTT
GAGACGCACGTGACGTTGGCGGTTTTTTTCACTTGATATTTGAATACGCA
ACATACATGTGTGCGATATGCTCCTCGACAGCTATATATCGTGAGTCCTG
CTAGGTGTGTGGATTGCTCCGGTTGGTTCCTTGGGGTGCAGATTCGTGAG
CACACGCGGAACACAGGAAAACTTGAGGGTTACAAGCTCCACCTCATCGC
AGCAGCGGCACTCTCGGCTGCTTGCTGCGGGTAGTATTTCGGATCATTGA
TTCCCCCACAGCACACAGCACACACAGCTGCATCAGGGTCCGCGTCACAT
ATTTTTCATGTATCCTCTCTTCAACAGCTATTAGCTGCGGTTGCGAGGTT
AAAGCGGGACTGCTGTGCCGCGGTAGTGTTTGCCACAGACCCCAAGGCGC
ATCGTTCTCTCGAGCGTGCGGCCCAGACTCTGTCTACACTCGAACAACGA
CCCCAGGAGCGGAGACGATTCTTGTATGGTCGCTTTCAATTTAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1079:13625..14318- >mRNA_E-siliculosus-1a_F_contig1079.551.1 ID=mRNA_E-siliculosus-1a_F_contig1079.551.1|Name=mRNA_E-siliculosus-1a_F_contig1079.551.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=546bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1079:13625..14318- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGGACGAGCAGCGACAGCAGTGCTCGAGACGGGGACTTGGCGAGGGA
GGAAGGGAGGGGAAGCATGGGTGGCAGCAGCAGGAGAAGGAGGAGAGGAT
CCAGCGCGAGGACGCTGGCGGCCGGGCTGGCGTTGACCCTGGCCGCCTGC
TCGACTCCGGCGTACGGATGAGGACGAGCAGCGACAGCAGTGCTCGAGAC
GGGGACTTGGCGAGGGAGGAAGGGAGGGGAAGCATGGGTGGCAGCAGCAG
GAGAAGGAGGAGAGGATCCAGCGCGAGGACGCTGGCGGCCGGGCTGGCGT
TGACCCTGGCCGCCTGCTCGACTCCGGCGTACGGACCCCAAGGCGCATCG
TTCTCTCGAGCGTGCGGCCCAGACTCTGTCTACACTCGAACAACGACCCC
AGGAGCGGAGACGATTCTTGTATGGTCGCTTTCAATTTAGACCCCAAGGC
GCATCGTTCTCTCGAGCGTGCGGCCCAGACTCTGTCTACACTCGAACAAC
GACCCCAGGAGCGGAGACGATTCTTGTATGGTCGCTTTCAATTTAG back to top
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