mRNA_E-siliculosus-1a_F_contig1079.551.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1079.551.1
Unique NamemRNA_E-siliculosus-1a_F_contig1079.551.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1079.551.1 vs. uniprot
Match: D7FU66_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU66_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 3.830e-27
Identity = 65/84 (77.38%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:    1 MRTSSDSSARDGDLAREEGRGSMGGSSRRRRRGSSARTLAAGLALTLAACSTPAYGPQGASFSRACGPDSVYTRTTTPGAETIL 252
            MRTSS  SARDG LAREEG GSMGGSSRRRRRGSSARTLAAGLALTLAACSTPAYG +           SVYTRTT P AETIL
Sbjct:    1 MRTSS-GSARDGGLAREEGTGSMGGSSRRRRRGSSARTLAAGLALTLAACSTPAYGSKAYHALERAAQASVYTRTTAPAAETIL 83
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BLAST of mRNA_E-siliculosus-1a_F_contig1079.551.1 vs. uniprot
Match: A0A6H5LE70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE70_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.690e-16
Identity = 48/53 (90.57%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:   10 SSDSSARDGDLAREEGRGSMGGSSRRRRRGSSARTLAAGLALTLAACSTPAYG 168
            SSDSSARDG LAREEGRGSMGGSSR    GSSARTLAAGLALTLAACSTPAYG
Sbjct:    3 SSDSSARDGGLAREEGRGSMGGSSRXXXXGSSARTLAAGLALTLAACSTPAYG 55
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1079.551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU66_ECTSI3.830e-2777.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LE70_9PHAE1.690e-1690.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1079contigE-siliculosus-1a_F_contig1079:13625..14318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size273
Model size273
Exons2
Ec32 orthologEc-13_003540.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categorysignal anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927579.9454188-CDS-E-siliculosus-1a_F_contig1079:13624..137301622927579.9454188-CDS-E-siliculosus-1a_F_contig1079:13624..13730Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1079 13625..13730 -
1696318595.454289-CDS-E-siliculosus-1a_F_contig1079:13624..137301696318595.454289-CDS-E-siliculosus-1a_F_contig1079:13624..13730Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1079 13625..13730 -
1622927579.9617562-CDS-E-siliculosus-1a_F_contig1079:14151..143181622927579.9617562-CDS-E-siliculosus-1a_F_contig1079:14151..14318Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1079 14152..14318 -
1696318595.4682808-CDS-E-siliculosus-1a_F_contig1079:14151..143181696318595.4682808-CDS-E-siliculosus-1a_F_contig1079:14151..14318Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1079 14152..14318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1079.551.1prot_E-siliculosus-1a_F_contig1079.551.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1079 13625..14318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1079.551.1

>prot_E-siliculosus-1a_F_contig1079.551.1 ID=prot_E-siliculosus-1a_F_contig1079.551.1|Name=mRNA_E-siliculosus-1a_F_contig1079.551.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=91bp
MRTSSDSSARDGDLAREEGRGSMGGSSRRRRRGSSARTLAAGLALTLAAC
STPAYGPQGASFSRACGPDSVYTRTTTPGAETILVWSLSI*
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mRNA from alignment at E-siliculosus-1a_F_contig1079:13625..14318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1079.551.1 ID=mRNA_E-siliculosus-1a_F_contig1079.551.1|Name=mRNA_E-siliculosus-1a_F_contig1079.551.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=694bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1079:13625..14318- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGGACGAGCAGCGACAGCAGTGCTCGAGACGGGGACTTGGCGAGGGA
GGAAGGGAGGGGAAGCATGGGTGGCAGCAGCAGGAGAAGGAGGAGAGGAT
CCAGCGCGAGGACGCTGGCGGCCGGGCTGGCGTTGACCCTGGCCGCCTGC
TCGACTCCGGCGTACGGGTGAGAGAGACGAGCGAGCAAGATTCGGTTTTT
GAGACGCACGTGACGTTGGCGGTTTTTTTCACTTGATATTTGAATACGCA
ACATACATGTGTGCGATATGCTCCTCGACAGCTATATATCGTGAGTCCTG
CTAGGTGTGTGGATTGCTCCGGTTGGTTCCTTGGGGTGCAGATTCGTGAG
CACACGCGGAACACAGGAAAACTTGAGGGTTACAAGCTCCACCTCATCGC
AGCAGCGGCACTCTCGGCTGCTTGCTGCGGGTAGTATTTCGGATCATTGA
TTCCCCCACAGCACACAGCACACACAGCTGCATCAGGGTCCGCGTCACAT
ATTTTTCATGTATCCTCTCTTCAACAGCTATTAGCTGCGGTTGCGAGGTT
AAAGCGGGACTGCTGTGCCGCGGTAGTGTTTGCCACAGACCCCAAGGCGC
ATCGTTCTCTCGAGCGTGCGGCCCAGACTCTGTCTACACTCGAACAACGA
CCCCAGGAGCGGAGACGATTCTTGTATGGTCGCTTTCAATTTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1079:13625..14318-

>mRNA_E-siliculosus-1a_F_contig1079.551.1 ID=mRNA_E-siliculosus-1a_F_contig1079.551.1|Name=mRNA_E-siliculosus-1a_F_contig1079.551.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=546bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1079:13625..14318- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGGACGAGCAGCGACAGCAGTGCTCGAGACGGGGACTTGGCGAGGGA
GGAAGGGAGGGGAAGCATGGGTGGCAGCAGCAGGAGAAGGAGGAGAGGAT
CCAGCGCGAGGACGCTGGCGGCCGGGCTGGCGTTGACCCTGGCCGCCTGC
TCGACTCCGGCGTACGGATGAGGACGAGCAGCGACAGCAGTGCTCGAGAC
GGGGACTTGGCGAGGGAGGAAGGGAGGGGAAGCATGGGTGGCAGCAGCAG
GAGAAGGAGGAGAGGATCCAGCGCGAGGACGCTGGCGGCCGGGCTGGCGT
TGACCCTGGCCGCCTGCTCGACTCCGGCGTACGGACCCCAAGGCGCATCG
TTCTCTCGAGCGTGCGGCCCAGACTCTGTCTACACTCGAACAACGACCCC
AGGAGCGGAGACGATTCTTGTATGGTCGCTTTCAATTTAGACCCCAAGGC
GCATCGTTCTCTCGAGCGTGCGGCCCAGACTCTGTCTACACTCGAACAAC
GACCCCAGGAGCGGAGACGATTCTTGTATGGTCGCTTTCAATTTAG
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