mRNA_E-siliculosus-1a_F_contig10765.537.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI) HSP 1 Score: 226 bits (575), Expect = 2.750e-66 Identity = 112/117 (95.73%), Postives = 113/117 (96.58%), Query Frame = 1 Query: 1 AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARMLALQLSDGYVDGPLPTTDTAEERGTHTTAGMRGVEGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKTTPAV 351
AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLAR LALQLSDGYVDG LPTTDTAEERGTHTTAGM GVEGGCGWSQD+GASPDSATEEAVMDWFVEEVADYEPN LDARKTTPAV
Sbjct: 765 AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDARKTTPAV 881
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI) HSP 1 Score: 218 bits (555), Expect = 6.250e-64 Identity = 108/117 (92.31%), Postives = 111/117 (94.87%), Query Frame = 1 Query: 1 AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARMLALQLSDGYVDGPLPTTDTAEERGTHTTAGMRGVEGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKTTPAV 351
AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLAR LALQLSDGYVDG LPTTDTAEERG+H TAGM GVEGGCGWSQD+GASPDSATEEAVMDWFVEEVADYEPN +DARKTT AV
Sbjct: 553 AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGSHATAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNVDARKTTAAV 669
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI) HSP 1 Score: 216 bits (551), Expect = 2.600e-63 Identity = 108/117 (92.31%), Postives = 111/117 (94.87%), Query Frame = 1 Query: 1 AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARMLALQLSDGYVDGPLPTTDTAEERGTHTTAGMRGVEGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKTTPAV 351
AAAALKAGDRYLQTRRVSKICD+APDSTDCCLLAR LALQLSDGYVDG LPT DTAEERGTHTTAGM GVEG CGWSQD+GASPDSATEEAVMDWFVEEVADYEPN+LDARKTT AV
Sbjct: 580 AAAALKAGDRYLQTRRVSKICDMAPDSTDCCLLARALALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGECGWSQDIGASPDSATEEAVMDWFVEEVADYEPNKLDARKTTAAV 696
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: A0A6H5JSF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF6_9PHAE) HSP 1 Score: 195 bits (495), Expect = 2.370e-61 Identity = 101/117 (86.32%), Postives = 102/117 (87.18%), Query Frame = 1 Query: 1 AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARMLALQLSDGYVDGPLPTTDTAEERGTHTTAGMRGVEGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKTTPAV 351
AAAAL AGDRYLQTRRVSKICDIAPDS CC LAR LALQLSDGYVDG LPTTDTAEERGTHTTAG G GWSQD+GASPD ATEEAVMDWFVEEVADYEPN LDARKTTPAV
Sbjct: 85 AAAALNAGDRYLQTRRVSKICDIAPDSAGCCSLARTLALQLSDGYVDGALPTTDTAEERGTHTTAG------GGGWSQDIGASPDPATEEAVMDWFVEEVADYEPNNLDARKTTPAV 195
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: A0A6H5JH23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH23_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 3.910e-20 Identity = 48/75 (64.00%), Postives = 52/75 (69.33%), Query Frame = 1 Query: 127 DGYVDGPLPTTDTAEERGTHTTAGMRGVEGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKTTPAV 351
D Y + L + A RG TA GWSQD+GASPD+ATEEAVMDWFVEEVADYEPN LDARKTTPAV
Sbjct: 18 DEYSNTKLRSCARAGYRGLFATAWG-------GWSQDIGASPDAATEEAVMDWFVEEVADYEPNNLDARKTTPAV 85
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: A0A6H5KC16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC16_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 2.500e-19 Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 1 Query: 193 AGMRGV--EGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKTTPAV 351
AG RG+ GG GWSQD+GASPDSATEEAVMDWFVEEVADYEPN LD RKTTPAV
Sbjct: 32 AGYRGLFATGGGGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDTRKTTPAV 86
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: D7G8A7_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A7_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 8.770e-19 Identity = 52/118 (44.07%), Postives = 71/118 (60.17%), Query Frame = 1 Query: 1 AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARMLALQLSDGYVDGPLPTTDTAEERGTHTTAGM---RGVEGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKTTP 345
AA ALKAGD +QTRRV K+ D+APD+ +CC +A++L L+L+D D + T+ H+ AG G+ G C WSQ G PD A++E M+WF EE A PN + K+TP
Sbjct: 389 AAEALKAGDNNIQTRRVIKMTDLAPDAVECCSVAKLLGLRLTDYLSDETITTSYDGRGGPVHSAAGFGEGAGI-GACEWSQSNGGLPDCASDEDFMEWFAEEAASCVPN--NTGKSTP 503
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: D8LGB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB9_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 8.870e-17 Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = 1 Query: 64 DIAPDSTDCCLLARMLALQLSDGYVDGPLPTTDTAEERGTHTTAGMRGVEGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKT 339
D+APD+ +CC LAR +AL+L+DG DGP+ T+ AEE+ T AG+ GG G D +EEAVM+WF+EEV +YEP+ D R+T
Sbjct: 160 DLAPDAVECCKLARTVALRLTDGLPDGPIATSHDAEEKRTPNAAGVGWAAGG----SKFGVLTDGVSEEAVMEWFIEEVTNYEPS--DRRET 245
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: A0A6H5KEA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA4_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 4.810e-16 Identity = 56/139 (40.29%), Postives = 73/139 (52.52%), Query Frame = 1 Query: 1 AAAALKAGDRYLQTRRVSK-----------------------ICDIAPDSTDCCLLARMLALQLSDGYVDGPLPTTDTAEERGTHTTAGMRGVEGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKTTPA 348
AAAALKA D +QTRRV K I D+A D+ + C LAR LAL++++G G + TTD + GG GW+ D+GA PD +EEAVM+WF EEVA++E N A + TPA
Sbjct: 164 AAAALKARDHRMQTRRVVKHLQPSTYVHSRPTGLNQLFDDWQITDLAADAVERCSLARRLALRMTEGLAAGTISTTDNSV--------------GGRGWNLDLGALPDGTSEEAVMEWFTEEVANHEANTT-ASRGTPA 287
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI) HSP 1 Score: 82.0 bits (201), Expect = 8.480e-16 Identity = 50/115 (43.48%), Postives = 60/115 (52.17%), Query Frame = 1 Query: 1 AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARMLALQLSDGYVDGPLPTTDTAEERGTHTTAGMRGVEGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKTTP 345
A+AALK GDRY+QTRRV KI DIA D+ +CC LAR LA GG GWSQ A PD A + VM+WF +EVA+ EP + A +TTP
Sbjct: 866 ASAALKTGDRYIQTRRVVKIADIARDAVECCSLARRLAXXXXXXXXXXXXXXXXXXX---------XXXXXGGGGWSQGEYALPDGARDRDVMEWFADEVANLEPQDHHATRTTP 971 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 14 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10765.537.1 >prot_E-siliculosus-1a_F_contig10765.537.1 ID=prot_E-siliculosus-1a_F_contig10765.537.1|Name=mRNA_E-siliculosus-1a_F_contig10765.537.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=117bp AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARMLALQLSDGYVDGPLback to top mRNA from alignment at E-siliculosus-1a_F_contig10765:1083..2095+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10765.537.1 ID=mRNA_E-siliculosus-1a_F_contig10765.537.1|Name=mRNA_E-siliculosus-1a_F_contig10765.537.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1013bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10765:1083..2095+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10765:1083..2095+ >mRNA_E-siliculosus-1a_F_contig10765.537.1 ID=mRNA_E-siliculosus-1a_F_contig10765.537.1|Name=mRNA_E-siliculosus-1a_F_contig10765.537.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=702bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10765:1083..2095+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |