mRNA_E-siliculosus-1a_F_contig10765.537.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10765.537.1
Unique NamemRNA_E-siliculosus-1a_F_contig10765.537.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 2.750e-66
Identity = 112/117 (95.73%), Postives = 113/117 (96.58%), Query Frame = 1
Query:    1 AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARMLALQLSDGYVDGPLPTTDTAEERGTHTTAGMRGVEGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKTTPAV 351
            AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLAR LALQLSDGYVDG LPTTDTAEERGTHTTAGM GVEGGCGWSQD+GASPDSATEEAVMDWFVEEVADYEPN LDARKTTPAV
Sbjct:  765 AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDARKTTPAV 881          
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 6.250e-64
Identity = 108/117 (92.31%), Postives = 111/117 (94.87%), Query Frame = 1
Query:    1 AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARMLALQLSDGYVDGPLPTTDTAEERGTHTTAGMRGVEGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKTTPAV 351
            AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLAR LALQLSDGYVDG LPTTDTAEERG+H TAGM GVEGGCGWSQD+GASPDSATEEAVMDWFVEEVADYEPN +DARKTT AV
Sbjct:  553 AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGSHATAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNVDARKTTAAV 669          
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 2.600e-63
Identity = 108/117 (92.31%), Postives = 111/117 (94.87%), Query Frame = 1
Query:    1 AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARMLALQLSDGYVDGPLPTTDTAEERGTHTTAGMRGVEGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKTTPAV 351
            AAAALKAGDRYLQTRRVSKICD+APDSTDCCLLAR LALQLSDGYVDG LPT DTAEERGTHTTAGM GVEG CGWSQD+GASPDSATEEAVMDWFVEEVADYEPN+LDARKTT AV
Sbjct:  580 AAAALKAGDRYLQTRRVSKICDMAPDSTDCCLLARALALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGECGWSQDIGASPDSATEEAVMDWFVEEVADYEPNKLDARKTTAAV 696          
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: A0A6H5JSF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF6_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 2.370e-61
Identity = 101/117 (86.32%), Postives = 102/117 (87.18%), Query Frame = 1
Query:    1 AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARMLALQLSDGYVDGPLPTTDTAEERGTHTTAGMRGVEGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKTTPAV 351
            AAAAL AGDRYLQTRRVSKICDIAPDS  CC LAR LALQLSDGYVDG LPTTDTAEERGTHTTAG      G GWSQD+GASPD ATEEAVMDWFVEEVADYEPN LDARKTTPAV
Sbjct:   85 AAAALNAGDRYLQTRRVSKICDIAPDSAGCCSLARTLALQLSDGYVDGALPTTDTAEERGTHTTAG------GGGWSQDIGASPDPATEEAVMDWFVEEVADYEPNNLDARKTTPAV 195          
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: A0A6H5JH23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH23_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.910e-20
Identity = 48/75 (64.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  127 DGYVDGPLPTTDTAEERGTHTTAGMRGVEGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKTTPAV 351
            D Y +  L +   A  RG   TA         GWSQD+GASPD+ATEEAVMDWFVEEVADYEPN LDARKTTPAV
Sbjct:   18 DEYSNTKLRSCARAGYRGLFATAWG-------GWSQDIGASPDAATEEAVMDWFVEEVADYEPNNLDARKTTPAV 85          
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: A0A6H5KC16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC16_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.500e-19
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 1
Query:  193 AGMRGV--EGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKTTPAV 351
            AG RG+   GG GWSQD+GASPDSATEEAVMDWFVEEVADYEPN LD RKTTPAV
Sbjct:   32 AGYRGLFATGGGGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDTRKTTPAV 86          
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: D7G8A7_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A7_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 8.770e-19
Identity = 52/118 (44.07%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    1 AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARMLALQLSDGYVDGPLPTTDTAEERGTHTTAGM---RGVEGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKTTP 345
            AA ALKAGD  +QTRRV K+ D+APD+ +CC +A++L L+L+D   D  + T+        H+ AG     G+ G C WSQ  G  PD A++E  M+WF EE A   PN  +  K+TP
Sbjct:  389 AAEALKAGDNNIQTRRVIKMTDLAPDAVECCSVAKLLGLRLTDYLSDETITTSYDGRGGPVHSAAGFGEGAGI-GACEWSQSNGGLPDCASDEDFMEWFAEEAASCVPN--NTGKSTP 503          
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: D8LGB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB9_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 8.870e-17
Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = 1
Query:   64 DIAPDSTDCCLLARMLALQLSDGYVDGPLPTTDTAEERGTHTTAGMRGVEGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKT 339
            D+APD+ +CC LAR +AL+L+DG  DGP+ T+  AEE+ T   AG+    GG       G   D  +EEAVM+WF+EEV +YEP+  D R+T
Sbjct:  160 DLAPDAVECCKLARTVALRLTDGLPDGPIATSHDAEEKRTPNAAGVGWAAGG----SKFGVLTDGVSEEAVMEWFIEEVTNYEPS--DRRET 245          
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: A0A6H5KEA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.810e-16
Identity = 56/139 (40.29%), Postives = 73/139 (52.52%), Query Frame = 1
Query:    1 AAAALKAGDRYLQTRRVSK-----------------------ICDIAPDSTDCCLLARMLALQLSDGYVDGPLPTTDTAEERGTHTTAGMRGVEGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKTTPA 348
            AAAALKA D  +QTRRV K                       I D+A D+ + C LAR LAL++++G   G + TTD +               GG GW+ D+GA PD  +EEAVM+WF EEVA++E N   A + TPA
Sbjct:  164 AAAALKARDHRMQTRRVVKHLQPSTYVHSRPTGLNQLFDDWQITDLAADAVERCSLARRLALRMTEGLAAGTISTTDNSV--------------GGRGWNLDLGALPDGTSEEAVMEWFTEEVANHEANTT-ASRGTPA 287          
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 8.480e-16
Identity = 50/115 (43.48%), Postives = 60/115 (52.17%), Query Frame = 1
Query:    1 AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARMLALQLSDGYVDGPLPTTDTAEERGTHTTAGMRGVEGGCGWSQDVGASPDSATEEAVMDWFVEEVADYEPNELDARKTTP 345
            A+AALK GDRY+QTRRV KI DIA D+ +CC LAR LA                                 GG GWSQ   A PD A +  VM+WF +EVA+ EP +  A +TTP
Sbjct:  866 ASAALKTGDRYIQTRRVVKIADIARDAVECCSLARRLAXXXXXXXXXXXXXXXXXXX---------XXXXXGGGGWSQGEYALPDGARDRDVMEWFADEVANLEPQDHHATRTTP 971          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10765.537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FUA0_ECTSI2.750e-6695.73Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
D7FUA2_ECTSI6.250e-6492.31Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
D7FUA1_ECTSI2.600e-6392.31Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
A0A6H5JSF6_9PHAE2.370e-6186.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH23_9PHAE3.910e-2064.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC16_9PHAE2.500e-1983.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8A7_ECTSI8.770e-1944.07Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
D8LGB9_ECTSI8.870e-1747.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEA4_9PHAE4.810e-1640.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPS8_ECTSI8.480e-1643.48Hypothetical leucine rich repeat protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10765contigE-siliculosus-1a_F_contig10765:1083..2095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size351
Model size351
Exons3
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EC2.7.11.1
EggNOG OGs2QQYD@2759,COG4886@1
EggNOG free text desc.protein serine/threonine kinase activity
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
KEGG ModuleM00686
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG koko:K04730,ko:K04733
Seed eggNOG ortholog2880.D7FUA0
Seed ortholog evalue8.5e-57
Seed ortholog score226.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10765.537.1prot_E-siliculosus-1a_F_contig10765.537.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10765 1083..2095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927577.0977955-CDS-E-siliculosus-1a_F_contig10765:1082..11391622927577.0977955-CDS-E-siliculosus-1a_F_contig10765:1082..1139Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10765 1083..1139 +
1696318594.635253-CDS-E-siliculosus-1a_F_contig10765:1082..11391696318594.635253-CDS-E-siliculosus-1a_F_contig10765:1082..1139Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10765 1083..1139 +
1622927577.1078942-CDS-E-siliculosus-1a_F_contig10765:1254..14111622927577.1078942-CDS-E-siliculosus-1a_F_contig10765:1254..1411Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10765 1255..1411 +
1696318594.6492603-CDS-E-siliculosus-1a_F_contig10765:1254..14111696318594.6492603-CDS-E-siliculosus-1a_F_contig10765:1254..1411Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10765 1255..1411 +
1622927577.1172113-CDS-E-siliculosus-1a_F_contig10765:1958..20951622927577.1172113-CDS-E-siliculosus-1a_F_contig10765:1958..2095Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10765 1959..2095 +
1696318594.659079-CDS-E-siliculosus-1a_F_contig10765:1958..20951696318594.659079-CDS-E-siliculosus-1a_F_contig10765:1958..2095Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10765 1959..2095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10765.537.1

>prot_E-siliculosus-1a_F_contig10765.537.1 ID=prot_E-siliculosus-1a_F_contig10765.537.1|Name=mRNA_E-siliculosus-1a_F_contig10765.537.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=117bp
AAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARMLALQLSDGYVDGPL
PTTDTAEERGTHTTAGMRGVEGGCGWSQDVGASPDSATEEAVMDWFVEEV
ADYEPNELDARKTTPAV
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mRNA from alignment at E-siliculosus-1a_F_contig10765:1083..2095+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10765.537.1 ID=mRNA_E-siliculosus-1a_F_contig10765.537.1|Name=mRNA_E-siliculosus-1a_F_contig10765.537.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1013bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10765:1083..2095+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTGCCGCAGCTTTGAAGGCGGGAGACCGCTATCTGCAAACTCGACGCGT GTCGAAGGTGAGCTTGTTTCACGTGTACGATGTCTCGACGGTTCTACGTA AGATGCGCCCGCCCATTGGCTTGTGCTATGGTCGACACTGACGCACCCAC GACGTTTCGGATACTCTGGCAGATCTGTGACATCGCACCCGACTCGACTG ACTGTTGTTTGCTGGCGAGGATGTTGGCGTTGCAACTCTCGGATGGGTAT GTGGACGGCCCCCTCCCCACGACTGACACGGCTGAAGAACGTGGCACGCA CACCACAGCAGGCATGCGTGGTGTTGAGGGTGAGGATCCACAGCGCAATT GGCTTGTCCCTTGGCAGCCAACGCCGCTTTACTGAGTGGGGTTTGTTGGA TGGCTGAGCCCACCATCCTGCAACATAGTGGGCGTACGCCTCAATTGCTT GTGGGCAATTGTGCTTATGGAACCGCGATGGTATTGGTAGAAACGCATGC ACCCTTAGCGCCATGGTGTTTGGCTTAACGTTTTGCGATGGGTACGTGGT TTACGAAACCATCCGCTCCACCTTGCCCTGTTGAAGATAATAGACGATCC AGAGCGCTTTTTTCCATCACCTTGATATTCGGTGCACCCAGCCCCCATTA GGTGTCGGGCCTTGGATTGATCCATGTGTTTGGCGTATGTGTGGTAGCGA GTGAGGTTGTTCTTGGGGTCTTGTCGCGACACCCTTCGAACCCACCGTGA GCCCGATTGCAAGGGCATTGCCAAGGCCTCACGCACCTGCAACGAGTTTT TATGTGGGATGAGTATTCCAAGCCAACGTCGAGATCTTGTGCTCGAACGG GGTACGGTGGGTTGTTTGCATTTCAGGTGGGTGCGGATGGAGCCAAGATG TGGGAGCCTCGCCAGACTCTGCGACCGAGGAAGCCGTCATGGACTGGTTT GTCGAAGAAGTGGCGGACTACGAGCCGAACGAACTCGATGCAAGGAAAAC AACTCCTGCCGTA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10765:1083..2095+

>mRNA_E-siliculosus-1a_F_contig10765.537.1 ID=mRNA_E-siliculosus-1a_F_contig10765.537.1|Name=mRNA_E-siliculosus-1a_F_contig10765.537.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=702bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10765:1083..2095+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTGCCGCAGCTTTGAAGGCGGGAGACCGCTATCTGCAAACTCGACGCGT
GTCGAAGGCTGCCGCAGCTTTGAAGGCGGGAGACCGCTATCTGCAAACTC
GACGCGTGTCGAAGATCTGTGACATCGCACCCGACTCGACTGACTGTTGT
TTGCTGGCGAGGATGTTGGCGTTGCAACTCTCGGATGGGTATGTGGACGG
CCCCCTCCCCACGACTGACACGGCTGAAGAACGTGGCACGCACACCACAG
CAGGCATGCGTGGTGTTGAGGATCTGTGACATCGCACCCGACTCGACTGA
CTGTTGTTTGCTGGCGAGGATGTTGGCGTTGCAACTCTCGGATGGGTATG
TGGACGGCCCCCTCCCCACGACTGACACGGCTGAAGAACGTGGCACGCAC
ACCACAGCAGGCATGCGTGGTGTTGAGGGTGGGTGCGGATGGAGCCAAGA
TGTGGGAGCCTCGCCAGACTCTGCGACCGAGGAAGCCGTCATGGACTGGT
TTGTCGAAGAAGTGGCGGACTACGAGCCGAACGAACTCGATGCAAGGAAA
ACAACTCCTGCCGTAGTGGGTGCGGATGGAGCCAAGATGTGGGAGCCTCG
CCAGACTCTGCGACCGAGGAAGCCGTCATGGACTGGTTTGTCGAAGAAGT
GGCGGACTACGAGCCGAACGAACTCGATGCAAGGAAAACAACTCCTGCCG
TA
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