Homology
BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match:
D7FY66_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY66_ECTSI)
HSP 1 Score: 162 bits (411), Expect = 5.160e-47
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1
Query: 1 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD 228
EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD
Sbjct: 307 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD 382
BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match:
A0A6H5JRH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH0_9PHAE)
HSP 1 Score: 116 bits (290), Expect = 3.700e-30
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 1
Query: 1 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQI 177
EIDFPKSS++ VCFECTAR VSW +LMTGMETGMRALGHANETYFRVNEEGILCIQHQ+
Sbjct: 224 EIDFPKSSQSLVCFECTARGVSWAFLMTGMETGMRALGHANETYFRVNEEGILCIQHQV 282
BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match:
A0A835YYW5_9STRA (Repair protein Rad1/Rec1/Rad17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW5_9STRA)
HSP 1 Score: 87.8 bits (216), Expect = 6.690e-19
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1
Query: 4 IDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLC 222
I FP+SSEAFV F CT + W+Y ++ +E GMRAL A ET+ R+NEEGI+CIQHQ+ ++ G ++VD L+C
Sbjct: 229 IQFPRSSEAFVHFSCTPPSLRWSYALSALEGGMRALPFAQETFVRINEEGIMCIQHQVQVA-GHNTYVDFLIC 300
BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match:
A0A7S0XDK7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDK7_9STRA)
HSP 1 Score: 78.6 bits (192), Expect = 5.500e-16
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 1
Query: 1 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD 228
EI+FP+ S+ FV F C + WTY +T ++ GM+AL + ET+ R+NEEG++CIQHQI + G ++D L+ D
Sbjct: 149 EIEFPRLSDLFVSFRCD-KSSKWTYPLTSLQLGMKALNISKETFIRMNEEGVICIQHQIETNRGHEIYIDYLMVSD 223
BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match:
A0A4D9CMN7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMN7_9STRA)
HSP 1 Score: 77.8 bits (190), Expect = 2.380e-15
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1
Query: 1 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMG-QTSFVDVL 216
EI PKSSEAFV F+C+ R SW+Y + + GMRAL A ETY R+NEEGI+C+QHQ+ + Q++F+D L
Sbjct: 212 EIFLPKSSEAFVHFDCSEAR-SWSYGLGALNQGMRALTVAKETYVRINEEGIMCVQHQVENTASRQSTFIDFL 283
BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match:
A0A7S2G8B6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G8B6_9STRA)
HSP 1 Score: 67.0 bits (162), Expect = 1.840e-11
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 1 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD 228
+I+FP+SS+ F FECT + Y GMRAL + E+YFR+NE G+LCIQH + G F+D ++ P+
Sbjct: 190 DIEFPRSSDLFELFECT-ETMKTEYDYDSFVQGMRALTVSEESYFRINEGGLLCIQHHVETHGGGRCFIDFIMLPN 264
BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match:
A0A8K1C6J7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6J7_PYTOL)
HSP 1 Score: 65.5 bits (158), Expect = 9.670e-11
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 1
Query: 1 EIDFPKSSEAFVCFECTARRVS------WTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD 228
EI+F +SS AF+ F CT S T+ + ++ +ALGH+NET+ R+N +G L +QH I G +FVD L+ P+
Sbjct: 263 EIEFARSSSAFIEFFCTNDETSDDGSASATFHVAVLQQAFKALGHSNETFLRMNADGFLSVQHMIESGSGDKAFVDALISPE 344
BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match:
F0XY36_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY36_AURAN)
HSP 1 Score: 61.6 bits (148), Expect = 2.590e-9
Identity = 31/78 (39.74%), Postives = 44/78 (56.41%), Query Frame = 1
Query: 1 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIP--MSMGQTSFVDVLLCPD 228
+ID P+ +AFV FE SWTY GM+AL H++ETY RVN+ G+L +QH + G +++ L C D
Sbjct: 205 QIDVPR--DAFVVFEAPEETRSWTYQTQAFLHGMKALPHSHETYVRVNDHGMLLVQHMVANDRGAGDNMYLEYLCCSD 280
BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match:
A0A7S4NJK3_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NJK3_9EUKA)
HSP 1 Score: 57.4 bits (137), Expect = 6.610e-8
Identity = 30/76 (39.47%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 4 IDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGH-ANETYFRVNEEGILCIQHQIPMSMGQ-TSFVDVLLCP 225
I FP+ S AFV F+C + ++ +TY + ++ ++A G+ A +T R+NE G+LC+QH + + G+ T FVD L P
Sbjct: 216 IQFPRDSPAFVEFDCRSTQI-FTYKLQHLQPALKASGNLATQTQIRMNERGMLCMQHMLSVPDGKKTCFVDFYLLP 290
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90 )
Total hits: 9
0 1 Expect = 5.16e-47 / Id = 100.00 Expect = 3.70e-30 / Id = 88.14 Expect = 6.69e-19 / Id = 53.42 Expect = 5.50e-16 / Id = 44.74 Expect = 2.38e-15 / Id = 53.42 Expect = 1.84e-11 / Id = 42.11 Expect = 9.67e-11 / Id = 39.02 Expect = 2.59e-9 / Id = 39.74 Expect = 6.61e-8 / Id = 39.47 Sequence D7FY66_ECTSI A0A6H5JRH0_9PHAE A0A835YYW5_9STRA A0A7S0XDK7_9STRA A0A4D9CMN7_9STRA A0A7S2G8B6_9STRA A0A8K1C6J7_PYTOL F0XY36_AURAN A0A7S4NJK3_9EUKA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 163.3 Seed ortholog evalue 4.4e-38 Seed eggNOG ortholog 2880.D7FY66 Preferred name RAD1 KEGG ko ko:K02830,ko:K05665 KEGG TC 3.A.1.208.8 KEGG Pathway ko01523,ko02010,ko04071,ko04111,ko04113,ko04218,ko04977,ko05206,map01523,map02010,map04071,map04111,map04113,map04218,map04977,map05206 GOs GO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000280,GO:0000723,GO:0000785,GO:0000792,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0004518,GO:0004527,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007095,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008219,GO:0008408,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0010389,GO:0010564,GO:0010639,GO:0010833,GO:0010948,GO:0010972,GO:0012501,GO:0016043,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0022402,GO:0022414,GO:0023052,GO:0030896,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0032200,GO:0032991,GO:0033043,GO:0033313,GO:0033314,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035825,GO:0035861,GO:0040020,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045786,GO:0045835,GO:0045930,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0090734,GO:0097159,GO:0097190,GO:0097193,GO:0104004,GO:0140013,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990421,GO:2000241,GO:2000242 EggNOG free text desc. exodeoxyribonuclease III activity EggNOG OGs KOG3194@1,KOG3194@2759 EC 3.1.11.2 COG Functional cat. V Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko01000,ko02000,ko03400 Hectar predicted targeting category other localisation Exons 2 Model size 228 Cds size 228 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10024.41.1
>prot_E-fasciculatus_F_contig10024.41.1 ID=prot_E-fasciculatus_F_contig10024.41.1|Name=mRNA_E-fasciculatus_F_contig10024.41.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=76bp
EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEE back to top mRNA from alignment at E-fasciculatus_F_contig10024:3844..4945-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10024.41.1 ID=mRNA_E-fasciculatus_F_contig10024.41.1|Name=mRNA_E-fasciculatus_F_contig10024.41.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1102bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10024:3844..4945- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)GAGATCGACTTCCCCAAGAGCTCAGAGGCGTTCGTGTGCTTCGAATGCAC
CGCGAGGAGGGTGTCGTGGACCTACCTCATGACCGGGATGGAGACCGGCA
TGCGCGCCCTGGGGCACGCCAACGAAACCTACTTCAGAGTTAACGAGGAG
GGCATCCTCTGCATACAGCATCAG GTAACGTGACTTGATCGCTCTCCCTC
TAATAGAGGACTGCTCTCGGTACAAAAGCTTTGCTGAAAGGTCGCCGTTG
GTGTGGAACACATCTGTCTTCGTGTGGGTCTGAAATTCTGACCACATCAG
GATCAATAGGAGACCAACCTACGCATCTTGTTTTGAGGACAGCAACATCC
ACCATTTGGATACCGTTGGGTCGATCTTGGAGCCGAAGCATCAGGTGACG
TGACTTGGTCACTCCCTGCGGTAATAGTTAAGAAGGGGGGTTCAGCATCA
GGTGGGGCGACTTGATTGCTCTCTTTCGTTCTTGAGGCAACACGAGTCAC
GGTCGGGCTTGACCTCATAAGGTGGCTTGATTGCCACGAGTCGGGGTGAA
TGCGCAGAATGTTGAACGCCTCGTTCTCACGCGAAGGGCACAGATTGTCG
GGGCGGGCAGGAAGGTGGGATAGGATAAAACATATTTCTGGCATCCATTT
GCCAAGTGGGGACACTAATTTTTCGATTCTCCTGGCACATTGCTCGATTT
TGGCGCATGCGCTGGCACACAGATGTTGGCGCATGCGCTGGCACACAGCG
AGACCTCCTGATGCAATAACGACGGTATACCCTGATGTTTACAGCGGGGA
GAGAAAGAGTAGCGGAACTCGAAACATACGGAGTTCCATCAAGAGATGGG
GGAGGGTGCTCTGACTAGGGTGTTTATGTGTGCCTAAGTGGGTTGGGACG
GCCCATTATGCGACCTCCTCGGGGGGGGGATATTCGGAACGGAACCCCAC
CAACGCTCTAGCTGGGTGCCAGATGACTGTGGGGTATATCGTTTCTCGCG
CCAAACAGCAACACGTGTGCCCGCCGATCATTTTTTCATGACGCGTAGAT
CCCCATGAGCATGGGGCAGACCAGCTTCGTGGACGTGTTGCTGTGCCCGG
AC back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10024:3844..4945-
>mRNA_E-fasciculatus_F_contig10024.41.1 ID=mRNA_E-fasciculatus_F_contig10024.41.1|Name=mRNA_E-fasciculatus_F_contig10024.41.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10024:3844..4945- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) back to top