mRNA_E-fasciculatus_F_contig10024.41.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10024.41.1
Unique NamemRNA_E-fasciculatus_F_contig10024.41.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match: D7FY66_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY66_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 5.160e-47
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:    1 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD 228
            EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD
Sbjct:  307 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD 382
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BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match: A0A6H5JRH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH0_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 3.700e-30
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    1 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQI 177
            EIDFPKSS++ VCFECTAR VSW +LMTGMETGMRALGHANETYFRVNEEGILCIQHQ+
Sbjct:  224 EIDFPKSSQSLVCFECTARGVSWAFLMTGMETGMRALGHANETYFRVNEEGILCIQHQV 282
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BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match: A0A835YYW5_9STRA (Repair protein Rad1/Rec1/Rad17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW5_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 6.690e-19
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    4 IDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLC 222
            I FP+SSEAFV F CT   + W+Y ++ +E GMRAL  A ET+ R+NEEGI+CIQHQ+ ++ G  ++VD L+C
Sbjct:  229 IQFPRSSEAFVHFSCTPPSLRWSYALSALEGGMRALPFAQETFVRINEEGIMCIQHQVQVA-GHNTYVDFLIC 300
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BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match: A0A7S0XDK7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDK7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.500e-16
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:    1 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD 228
            EI+FP+ S+ FV F C  +   WTY +T ++ GM+AL  + ET+ R+NEEG++CIQHQI  + G   ++D L+  D
Sbjct:  149 EIEFPRLSDLFVSFRCD-KSSKWTYPLTSLQLGMKALNISKETFIRMNEEGVICIQHQIETNRGHEIYIDYLMVSD 223
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BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match: A0A4D9CMN7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMN7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.380e-15
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    1 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMG-QTSFVDVL 216
            EI  PKSSEAFV F+C+  R SW+Y +  +  GMRAL  A ETY R+NEEGI+C+QHQ+  +   Q++F+D L
Sbjct:  212 EIFLPKSSEAFVHFDCSEAR-SWSYGLGALNQGMRALTVAKETYVRINEEGIMCVQHQVENTASRQSTFIDFL 283
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BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match: A0A7S2G8B6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G8B6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.840e-11
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    1 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD 228
            +I+FP+SS+ F  FECT   +   Y       GMRAL  + E+YFR+NE G+LCIQH +    G   F+D ++ P+
Sbjct:  190 DIEFPRSSDLFELFECT-ETMKTEYDYDSFVQGMRALTVSEESYFRINEGGLLCIQHHVETHGGGRCFIDFIMLPN 264
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BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match: A0A8K1C6J7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6J7_PYTOL)

HSP 1 Score: 65.5 bits (158), Expect = 9.670e-11
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:    1 EIDFPKSSEAFVCFECTARRVS------WTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIPMSMGQTSFVDVLLCPD 228
            EI+F +SS AF+ F CT    S       T+ +  ++   +ALGH+NET+ R+N +G L +QH I    G  +FVD L+ P+
Sbjct:  263 EIEFARSSSAFIEFFCTNDETSDDGSASATFHVAVLQQAFKALGHSNETFLRMNADGFLSVQHMIESGSGDKAFVDALISPE 344
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BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match: F0XY36_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY36_AURAN)

HSP 1 Score: 61.6 bits (148), Expect = 2.590e-9
Identity = 31/78 (39.74%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:    1 EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEEGILCIQHQIP--MSMGQTSFVDVLLCPD 228
            +ID P+  +AFV FE      SWTY       GM+AL H++ETY RVN+ G+L +QH +      G   +++ L C D
Sbjct:  205 QIDVPR--DAFVVFEAPEETRSWTYQTQAFLHGMKALPHSHETYVRVNDHGMLLVQHMVANDRGAGDNMYLEYLCCSD 280
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BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Match: A0A7S4NJK3_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NJK3_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 6.610e-8
Identity = 30/76 (39.47%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:    4 IDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGH-ANETYFRVNEEGILCIQHQIPMSMGQ-TSFVDVLLCP 225
            I FP+ S AFV F+C + ++ +TY +  ++  ++A G+ A +T  R+NE G+LC+QH + +  G+ T FVD  L P
Sbjct:  216 IQFPRDSPAFVEFDCRSTQI-FTYKLQHLQPALKASGNLATQTQIRMNERGMLCMQHMLSVPDGKKTCFVDFYLLP 290
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10024.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FY66_ECTSI5.160e-47100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRH0_9PHAE3.700e-3088.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YYW5_9STRA6.690e-1953.42Repair protein Rad1/Rec1/Rad17-domain-containing p... [more]
A0A7S0XDK7_9STRA5.500e-1644.74Hypothetical protein (Fragment) n=2 Tax=Chromulina... [more]
A0A4D9CMN7_9STRA2.380e-1553.42Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2G8B6_9STRA1.840e-1142.11Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8K1C6J7_PYTOL9.670e-1139.02Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0XY36_AURAN2.590e-939.74Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S4NJK3_9EUKA6.610e-839.47Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10024contigE-fasciculatus_F_contig10024:3844..4945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue4.4e-38
Seed eggNOG ortholog2880.D7FY66
Preferred nameRAD1
KEGG koko:K02830,ko:K05665
KEGG TC3.A.1.208.8
KEGG Pathwayko01523,ko02010,ko04071,ko04111,ko04113,ko04218,ko04977,ko05206,map01523,map02010,map04071,map04111,map04113,map04218,map04977,map05206
GOsGO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000280,GO:0000723,GO:0000785,GO:0000792,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0004518,GO:0004527,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007095,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008219,GO:0008408,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0010389,GO:0010564,GO:0010639,GO:0010833,GO:0010948,GO:0010972,GO:0012501,GO:0016043,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0022402,GO:0022414,GO:0023052,GO:0030896,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0032200,GO:0032991,GO:0033043,GO:0033313,GO:0033314,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035825,GO:0035861,GO:0040020,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045786,GO:0045835,GO:0045930,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0090734,GO:0097159,GO:0097190,GO:0097193,GO:0104004,GO:0140013,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990421,GO:2000241,GO:2000242
EggNOG free text desc.exodeoxyribonuclease III activity
EggNOG OGsKOG3194@1,KOG3194@2759
EC3.1.11.2
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927504.6570969-CDS-E-fasciculatus_F_contig10024:3843..38971622927504.6570969-CDS-E-fasciculatus_F_contig10024:3843..3897Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10024 3844..3897 -
1695995567.2700744-CDS-E-fasciculatus_F_contig10024:3843..38971695995567.2700744-CDS-E-fasciculatus_F_contig10024:3843..3897Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10024 3844..3897 -
1622927504.675886-CDS-E-fasciculatus_F_contig10024:4771..49451622927504.675886-CDS-E-fasciculatus_F_contig10024:4771..4945Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10024 4772..4945 -
1695995567.2828503-CDS-E-fasciculatus_F_contig10024:4771..49451695995567.2828503-CDS-E-fasciculatus_F_contig10024:4771..4945Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10024 4772..4945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10024.41.1prot_E-fasciculatus_F_contig10024.41.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10024 3844..4945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10024.41.1

>prot_E-fasciculatus_F_contig10024.41.1 ID=prot_E-fasciculatus_F_contig10024.41.1|Name=mRNA_E-fasciculatus_F_contig10024.41.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=76bp
EIDFPKSSEAFVCFECTARRVSWTYLMTGMETGMRALGHANETYFRVNEE
GILCIQHQIPMSMGQTSFVDVLLCPD
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mRNA from alignment at E-fasciculatus_F_contig10024:3844..4945-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10024.41.1 ID=mRNA_E-fasciculatus_F_contig10024.41.1|Name=mRNA_E-fasciculatus_F_contig10024.41.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1102bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10024:3844..4945- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGATCGACTTCCCCAAGAGCTCAGAGGCGTTCGTGTGCTTCGAATGCAC
CGCGAGGAGGGTGTCGTGGACCTACCTCATGACCGGGATGGAGACCGGCA
TGCGCGCCCTGGGGCACGCCAACGAAACCTACTTCAGAGTTAACGAGGAG
GGCATCCTCTGCATACAGCATCAGGTAACGTGACTTGATCGCTCTCCCTC
TAATAGAGGACTGCTCTCGGTACAAAAGCTTTGCTGAAAGGTCGCCGTTG
GTGTGGAACACATCTGTCTTCGTGTGGGTCTGAAATTCTGACCACATCAG
GATCAATAGGAGACCAACCTACGCATCTTGTTTTGAGGACAGCAACATCC
ACCATTTGGATACCGTTGGGTCGATCTTGGAGCCGAAGCATCAGGTGACG
TGACTTGGTCACTCCCTGCGGTAATAGTTAAGAAGGGGGGTTCAGCATCA
GGTGGGGCGACTTGATTGCTCTCTTTCGTTCTTGAGGCAACACGAGTCAC
GGTCGGGCTTGACCTCATAAGGTGGCTTGATTGCCACGAGTCGGGGTGAA
TGCGCAGAATGTTGAACGCCTCGTTCTCACGCGAAGGGCACAGATTGTCG
GGGCGGGCAGGAAGGTGGGATAGGATAAAACATATTTCTGGCATCCATTT
GCCAAGTGGGGACACTAATTTTTCGATTCTCCTGGCACATTGCTCGATTT
TGGCGCATGCGCTGGCACACAGATGTTGGCGCATGCGCTGGCACACAGCG
AGACCTCCTGATGCAATAACGACGGTATACCCTGATGTTTACAGCGGGGA
GAGAAAGAGTAGCGGAACTCGAAACATACGGAGTTCCATCAAGAGATGGG
GGAGGGTGCTCTGACTAGGGTGTTTATGTGTGCCTAAGTGGGTTGGGACG
GCCCATTATGCGACCTCCTCGGGGGGGGGATATTCGGAACGGAACCCCAC
CAACGCTCTAGCTGGGTGCCAGATGACTGTGGGGTATATCGTTTCTCGCG
CCAAACAGCAACACGTGTGCCCGCCGATCATTTTTTCATGACGCGTAGAT
CCCCATGAGCATGGGGCAGACCAGCTTCGTGGACGTGTTGCTGTGCCCGG
AC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10024:3844..4945-

>mRNA_E-fasciculatus_F_contig10024.41.1 ID=mRNA_E-fasciculatus_F_contig10024.41.1|Name=mRNA_E-fasciculatus_F_contig10024.41.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10024:3844..4945- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGATCGACTTCCCCAAGAGCTCAGAGGCGTTCGTGTGCTTCGAATGCAC
CGCGAGGAGGGTGTCGTGGACCTACCTCATGACCGGGATGGAGACCGGCA
TGCGCGCCCTGGGGCACGCCAACGAAACCTACTTCAGAGTTAACGAGGAG
GGCATCCTCTGCATACAGCATCAGGAGATCGACTTCCCCAAGAGCTCAGA
GGCGTTCGTGTGCTTCGAATGCACCGCGAGGAGGGTGTCGTGGACCTACC
TCATGACCGGGATGGAGACCGGCATGCGCGCCCTGGGGCACGCCAACGAA
ACCTACTTCAGAGTTAACGAGGAGGGCATCCTCTGCATACAGCATCAGAT
CCCCATGAGCATGGGGCAGACCAGCTTCGTGGACGTGTTGCTGTGCCCGG
ACATCCCCATGAGCATGGGGCAGACCAGCTTCGTGGACGTGTTGCTGTGC
CCGGAC
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