mRNA_E-fasciculatus_F_contig1323.2437.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: D7FKE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE9_ECTSI) HSP 1 Score: 147 bits (371), Expect = 1.460e-39 Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1
Query: 1 RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYNYLTD 216
RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYNYLTD
Sbjct: 132 RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYNYLTD 203
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: A0A6H5KUD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUD1_9PHAE) HSP 1 Score: 108 bits (271), Expect = 4.890e-26 Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 1
Query: 1 RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYR 159
RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQK R
Sbjct: 126 RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKPR 178
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: A0A835YR85_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR85_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.280e-23 Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1
Query: 4 RFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFL 192
RFVW LH FV A+FDVGLK ASP++LL+MMP GLT+EH+KSHLQK+RLHR +SREEFL
Sbjct: 1 RFVWPDALHAAFVTAIFDVGLKLASPRVLLDMMPDPQGLTTEHVKSHLQKFRLHRDKSREEFL 63
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: A0A6S6I5N2_9STRA (Phosphorus starvation response 1 n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A6S6I5N2_9STRA) HSP 1 Score: 100 bits (248), Expect = 5.180e-23 Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 1
Query: 1 RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 201
+RFVW LH+DFVAA+FDVGLKCASPK +LEMM LT +HIKSHLQKYRLHR+R+REEFL+ +
Sbjct: 77 KRFVWPDDLHRDFVAAIFDVGLKCASPKTILEMMNNTKDLTPDHIKSHLQKYRLHRERAREEFLQHF 143
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: W7U4E9_9STRA (Two-component response regulator arr12 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4E9_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 7.800e-23 Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 1
Query: 1 RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 201
+RFVW LH+DFVAA+FDVGLKCASPK ++EMM LT +HIKSHLQKYRLHR+R+REEFL+ +
Sbjct: 56 KRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHF 122
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: A0A7S3QDX4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QDX4_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 6.150e-21 Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1
Query: 1 RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYN 204
RRF W LH+DFV+AVFDVGLK +SP LLE MP + +TSE IKSHLQKYRLHRQ+S++EF+ SY+
Sbjct: 158 RRFAWPDELHRDFVSAVFDVGLKHSSPSALLEQMPKHEDITSERIKSHLQKYRLHRQKSKKEFMSSYD 225
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: A0A7S3LD31_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LD31_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 8.800e-20 Identity = 40/68 (58.82%), Postives = 54/68 (79.41%), Query Frame = 1
Query: 1 RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYN 204
+RF W LH+DFVAA+FDVGLK +SP +LE MP + +TSE +KSHLQKYR+HR +S++EF+ SY+
Sbjct: 84 KRFTWPDDLHRDFVAAIFDVGLKHSSPSTILEHMPKHEQITSERVKSHLQKYRIHRIKSKKEFMSSYD 151
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: A0A4D9DAJ4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAJ4_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.520e-18 Identity = 41/62 (66.13%), Postives = 54/62 (87.10%), Query Frame = 1
Query: 22 PLHQ-DFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYN 204
P H+ DFV AVF +GL+C+SPK+L+++MP+ D LT+EHIKSHLQKYRLH QRS+EEF++ YN
Sbjct: 287 PQHETDFVGAVFKLGLQCSSPKVLMDLMPMTDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYN 348
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: A0A7S2YNK9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YNK9_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.680e-18 Identity = 40/67 (59.70%), Postives = 53/67 (79.10%), Query Frame = 1
Query: 1 RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 201
+RF W LH+DFV+A+FDVGLK +SP LLE MP + +T+E IKSHLQKYRLHR +S++EF+ +Y
Sbjct: 193 KRFTWPEELHRDFVSAIFDVGLKHSSPSTLLEQMPKHEQITTERIKSHLQKYRLHRVKSKQEFMHTY 259
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: W7TSM2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSM2_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.810e-18 Identity = 41/62 (66.13%), Postives = 54/62 (87.10%), Query Frame = 1
Query: 22 PLHQ-DFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYN 204
P H+ DFV AVF +GL+C+SPK+L+++MP+ D LT+EHIKSHLQKYRLH QRS+EEF++ YN
Sbjct: 316 PQHETDFVGAVFKLGLQCSSPKVLMDLMPMTDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYN 377 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1323.2437.1 >prot_E-fasciculatus_F_contig1323.2437.1 ID=prot_E-fasciculatus_F_contig1323.2437.1|Name=mRNA_E-fasciculatus_F_contig1323.2437.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=72bp RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQback to top mRNA from alignment at E-fasciculatus_F_contig1323:698..913- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1323.2437.1 ID=mRNA_E-fasciculatus_F_contig1323.2437.1|Name=mRNA_E-fasciculatus_F_contig1323.2437.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=216bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1323:698..913- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1323:698..913- >mRNA_E-fasciculatus_F_contig1323.2437.1 ID=mRNA_E-fasciculatus_F_contig1323.2437.1|Name=mRNA_E-fasciculatus_F_contig1323.2437.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1323:698..913- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |