mRNA_E-fasciculatus_F_contig1323.2437.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1323.2437.1
Unique NamemRNA_E-fasciculatus_F_contig1323.2437.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: D7FKE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE9_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 1.460e-39
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1
Query:    1 RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYNYLTD 216
            RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYNYLTD
Sbjct:  132 RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYNYLTD 203          
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: A0A6H5KUD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUD1_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 4.890e-26
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 1
Query:    1 RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYR 159
            RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQK R
Sbjct:  126 RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKPR 178          
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: A0A835YR85_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR85_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.280e-23
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    4 RFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFL 192
            RFVW   LH  FV A+FDVGLK ASP++LL+MMP   GLT+EH+KSHLQK+RLHR +SREEFL
Sbjct:    1 RFVWPDALHAAFVTAIFDVGLKLASPRVLLDMMPDPQGLTTEHVKSHLQKFRLHRDKSREEFL 63          
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: A0A6S6I5N2_9STRA (Phosphorus starvation response 1 n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A6S6I5N2_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.180e-23
Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 1
Query:    1 RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 201
            +RFVW   LH+DFVAA+FDVGLKCASPK +LEMM     LT +HIKSHLQKYRLHR+R+REEFL+ +
Sbjct:   77 KRFVWPDDLHRDFVAAIFDVGLKCASPKTILEMMNNTKDLTPDHIKSHLQKYRLHRERAREEFLQHF 143          
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: W7U4E9_9STRA (Two-component response regulator arr12 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4E9_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 7.800e-23
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 1
Query:    1 RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 201
            +RFVW   LH+DFVAA+FDVGLKCASPK ++EMM     LT +HIKSHLQKYRLHR+R+REEFL+ +
Sbjct:   56 KRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHF 122          
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: A0A7S3QDX4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QDX4_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 6.150e-21
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    1 RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYN 204
            RRF W   LH+DFV+AVFDVGLK +SP  LLE MP  + +TSE IKSHLQKYRLHRQ+S++EF+ SY+
Sbjct:  158 RRFAWPDELHRDFVSAVFDVGLKHSSPSALLEQMPKHEDITSERIKSHLQKYRLHRQKSKKEFMSSYD 225          
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: A0A7S3LD31_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LD31_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 8.800e-20
Identity = 40/68 (58.82%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYN 204
            +RF W   LH+DFVAA+FDVGLK +SP  +LE MP  + +TSE +KSHLQKYR+HR +S++EF+ SY+
Sbjct:   84 KRFTWPDDLHRDFVAAIFDVGLKHSSPSTILEHMPKHEQITSERVKSHLQKYRIHRIKSKKEFMSSYD 151          
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: A0A4D9DAJ4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAJ4_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.520e-18
Identity = 41/62 (66.13%), Postives = 54/62 (87.10%), Query Frame = 1
Query:   22 PLHQ-DFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYN 204
            P H+ DFV AVF +GL+C+SPK+L+++MP+ D LT+EHIKSHLQKYRLH QRS+EEF++ YN
Sbjct:  287 PQHETDFVGAVFKLGLQCSSPKVLMDLMPMTDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYN 348          
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: A0A7S2YNK9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YNK9_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.680e-18
Identity = 40/67 (59.70%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    1 RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 201
            +RF W   LH+DFV+A+FDVGLK +SP  LLE MP  + +T+E IKSHLQKYRLHR +S++EF+ +Y
Sbjct:  193 KRFTWPEELHRDFVSAIFDVGLKHSSPSTLLEQMPKHEQITTERIKSHLQKYRLHRVKSKQEFMHTY 259          
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Match: W7TSM2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSM2_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.810e-18
Identity = 41/62 (66.13%), Postives = 54/62 (87.10%), Query Frame = 1
Query:   22 PLHQ-DFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYN 204
            P H+ DFV AVF +GL+C+SPK+L+++MP+ D LT+EHIKSHLQKYRLH QRS+EEF++ YN
Sbjct:  316 PQHETDFVGAVFKLGLQCSSPKVLMDLMPMTDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYN 377          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1323.2437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKE9_ECTSI1.460e-39100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUD1_9PHAE4.890e-2698.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YR85_9STRA1.280e-2369.84Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6S6I5N2_9STRA5.180e-2370.15Phosphorus starvation response 1 n=1 Tax=Nannochlo... [more]
W7U4E9_9STRA7.800e-2368.66Two-component response regulator arr12 n=2 Tax=Mon... [more]
A0A7S3QDX4_9STRA6.150e-2166.18Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3LD31_9STRA8.800e-2058.82Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A4D9DAJ4_9STRA1.520e-1866.13Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2YNK9_9STRA1.680e-1859.70Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
W7TSM2_9STRA1.810e-1866.13Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1323contigE-fasciculatus_F_contig1323:698..913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue4.5e-16
Seed eggNOG ortholog35128.Thaps2390
GOsGO:0008150,GO:0048519,GO:0048831,GO:0050789,GO:0050793,GO:0051093,GO:0051239,GO:0051241,GO:0065007,GO:1900055,GO:1900056,GO:1905622,GO:2000024,GO:2000026
EggNOG free text desc.transcription, DNA-templated
EggNOG OGs2C4RN@1,2S88Y@2759,2XCYG@2836
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionG2-like domain Myb transcription factor
Ec32 orthologEc-12_002320.1
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927826.3307712-CDS-E-fasciculatus_F_contig1323:697..9131622927826.3307712-CDS-E-fasciculatus_F_contig1323:697..913Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1323 698..913 -
1695995711.3895392-CDS-E-fasciculatus_F_contig1323:697..9131695995711.3895392-CDS-E-fasciculatus_F_contig1323:697..913Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1323 698..913 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1323.2437.1prot_E-fasciculatus_F_contig1323.2437.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1323 698..913 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1323.2437.1

>prot_E-fasciculatus_F_contig1323.2437.1 ID=prot_E-fasciculatus_F_contig1323.2437.1|Name=mRNA_E-fasciculatus_F_contig1323.2437.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=72bp
RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQ
KYRLHRQRSREEFLKSYNYLTD
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mRNA from alignment at E-fasciculatus_F_contig1323:698..913-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1323.2437.1 ID=mRNA_E-fasciculatus_F_contig1323.2437.1|Name=mRNA_E-fasciculatus_F_contig1323.2437.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=216bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1323:698..913- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGCGGTTCGTCTGGTCCGTGCCCCTGCACCAGGACTTCGTGGCGGCGGT CTTCGACGTGGGACTCAAGTGCGCGTCGCCCAAGCTCCTCCTGGAGATGA TGCCCGTGGTGGACGGGCTCACCTCCGAGCACATTAAGAGCCACCTACAG AAGTACCGCCTGCACCGGCAGCGCTCCCGAGAGGAGTTCCTAAAGAGCTA CAACTACCTCACCGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1323:698..913-

>mRNA_E-fasciculatus_F_contig1323.2437.1 ID=mRNA_E-fasciculatus_F_contig1323.2437.1|Name=mRNA_E-fasciculatus_F_contig1323.2437.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1323:698..913- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGCGGTTCGTCTGGTCCGTGCCCCTGCACCAGGACTTCGTGGCGGCGGT
CTTCGACGTGGGACTCAAGTGCGCGTCGCCCAAGCTCCTCCTGGAGATGA
TGCCCGTGGTGGACGGGCTCACCTCCGAGCACATTAAGAGCCACCTACAG
AAGTACCGCCTGCACCGGCAGCGCTCCCGAGAGGAGTTCCTAAAGAGCTA
CAACTACCTCACCGACCGGCGGTTCGTCTGGTCCGTGCCCCTGCACCAGG
ACTTCGTGGCGGCGGTCTTCGACGTGGGACTCAAGTGCGCGTCGCCCAAG
CTCCTCCTGGAGATGATGCCCGTGGTGGACGGGCTCACCTCCGAGCACAT
TAAGAGCCACCTACAGAAGTACCGCCTGCACCGGCAGCGCTCCCGAGAGG
AGTTCCTAAAGAGCTACAACTACCTCACCGAC
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