mRNA_E-fasciculatus_F_contig12680.2048.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: A0A6H5JNF4_9PHAE (MEP16 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF4_9PHAE) HSP 1 Score: 568 bits (1463), Expect = 7.900e-201 Identity = 298/337 (88.43%), Postives = 306/337 (90.80%), Query Frame = 1
Query: 10 TPAPTSASREVASTTTAPAAPAITPSPVGTPXXXXMXXXXVIVATTAAPTPAAGEPGSPGVPPTPVPAKTVCDPDAALSFTYDSREEDEEIEGSLVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSVGGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSSGDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVRGFCTDMTNPEVFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
TPAPT SREV STTTAPA XXXX XXXX +V PA GEPGSPGVPP PVPAKTVCDP A LSFTYD+RE DEEIEGSLVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTM+LKGTSVGGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDE+LLTAHILADDS+GDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMV+SELGHMGYFASESYGITWKVRGFC DM+NPEVFDNV VYGDITNCDIHHMWYGMYSYGHQGGVWTD+LMH
Sbjct: 45 TPAPTPGSREVPSTTTAPA------XXXXXXXXXXXXXXXXVVTAXXXXXPATGEPGSPGVPPIPVPAKTVCDPAAELSFTYDARE-DEEIEGSLVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMNLKGTSVGGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDENLLTAHILADDSTGDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVDSELGHMGYFASESYGITWKVRGFCEDMSNPEVFDNVNVYGDITNCDIHHMWYGMYSYGHQGGVWTDSLMH 374
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: D7FWW1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW1_ECTSI) HSP 1 Score: 513 bits (1321), Expect = 1.400e-178 Identity = 247/260 (95.00%), Postives = 256/260 (98.46%), Query Frame = 1
Query: 241 LSFTYDSREEDEEIEGSLVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSVGGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSSGDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVRGFCTDMTNPEVFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
LSFTYD+RE DEEIEG+LVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTM+LKGTSVGGDCDELKIRSS TLIHAVRGHGGNLDIYKTLIQSWDE+LLTAHILADDS+GDEPRSYIAC+SEVVNENDTCDSGYAREDKGECRMDMV+SELGHMGYFASESYGITWKVRGFC DM+NPEVFDNV VYGDITNCDIHHMWYGMYSYGHQGGVWTD+LMH
Sbjct: 51 LSFTYDARE-DEEIEGALVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMNLKGTSVGGDCDELKIRSSTTLIHAVRGHGGNLDIYKTLIQSWDENLLTAHILADDSTGDEPRSYIACTSEVVNENDTCDSGYAREDKGECRMDMVDSELGHMGYFASESYGITWKVRGFCEDMSNPEVFDNVNVYGDITNCDIHHMWYGMYSYGHQGGVWTDSLMH 309
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: D7G257_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G257_ECTSI) HSP 1 Score: 303 bits (776), Expect = 3.390e-93 Identity = 154/283 (54.42%), Postives = 196/283 (69.26%), Query Frame = 1
Query: 178 GSPGVPPTPVPAKTVCDPDAALSFTYDSREEDEEIEGSLVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSVGGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSSGDEPRSYIACSSEVVNEND-TCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVRGFCTDMTNPE-VFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
GSPG PPTPVP K VCD A LSF Y E+ + LVT+ HASGDR+E GC+TLT+++ WL + P VPT +L VD T A+ T TG+WL+ TS+ ++NGVT ++KGTS+GGDCDELK S+ + + GHGGN+DI T+++SWD HIL D G RS+IAC SEVV + D TCD G A+ D GECRMD+V+S + + GY +ESYGITWKVRG C D++N + +FD+V+VYGD+ N DI+ MWYG YSYGH GGVWTD LMH
Sbjct: 320 GSPGFPPTPVPDKVVCDDSAELSFVYTL----EDTKRPLVTVAHASGDRSEAGCLTLTKLYDWLATEPADVPTGMLLTVDSTTETAVN--GTTATPTGIWLLDTSVVITNGVTFEIKGTSIGGDCDELKFSSTKKAWNRIMGHGGNIDIDSTVVRSWDASKTLDHILKDSDDGTTNRSFIACVSEVVVDADETCD-GTAQNDMGECRMDIVDSTVAYFGYDETESYGITWKVRGLCDDLSNKDTLFDSVRVYGDMKNSDIYGMWYGHYSYGHLGGVWTDNLMH 595
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: D7G261_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G261_ECTSI) HSP 1 Score: 273 bits (697), Expect = 3.160e-82 Identity = 140/286 (48.95%), Postives = 194/286 (67.83%), Query Frame = 1
Query: 184 PGVPPTPVPAKTVCDPDAALSFTYDSREEDEEIEGS----LVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSV-GGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSS-GDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVRGFCTDMTNPE-VFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
PG PPTPVP + CDP A ++F+Y ++E S L+TI H S DR E GC + +W+W+++ V +LLYP DP TG A TT TGVWL+RTS+ V+NGV ++ GT GGD D++ + SSPT +RG GG+L Y+T + SW E+ L H L DD+ G EPRSYI C SE++ E TCD G A++++GECRMD++ES + ++GY A+ESYG++WKVRG CTD++N + +FD+V+VYGD+ + DI+ +WYG YSYGH GG+WT+ MH
Sbjct: 215 PGTPPTPVPPRVTCDPAAVVAFSY-------KLETSTLLPLITISHESEDRDEGGCTNFSGLWEWVKAQDADVQ-ELLYPADPTTGEADTTGGAA---TGVWLLRTSVDVTNGVMFEVMGTQAEGGDSDKILLSSSPTNYFRIRGAGGHLYFYQTEVTSWVEEDLAPHTLPDDAEWGAEPRSYIGCLSEILEEGQTCD-GVAKKERGECRMDVIESIISYLGYEATESYGLSWKVRGLCTDLSNQDTLFDSVRVYGDLQDSDIYGLWYGHYSYGHLGGMWTNNFMH 488
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: A0A6H5J745_9PHAE (MEP21 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J745_9PHAE) HSP 1 Score: 274 bits (701), Expect = 7.600e-80 Identity = 147/306 (48.04%), Postives = 202/306 (66.01%), Query Frame = 1
Query: 139 ATTAAPTPAAGEPGS-----PGVPPTPVPAKTVCDPDAALSFTYDSREEDEEIEGS----LVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSV-GGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSS-GDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVRGFCTDMTNPE-VFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
A AAP P+A + PG PPTPVP + CDP A ++F+Y ++E S L+TI H S DR E GC + +W+W+++ V +LLYP DP TG A TT TGVWL+RTS+ V+NGV ++ GT GGD D++ + SSPT +RG GG+L Y+T + SW E+ L H+L DD+ G EPRSYI C SE++ E TCD G A++++GECRMD++ES + ++GY A+ESYG++WKVRG C D++N + +F++V+VYGDI N DI+ +WYG YSYGH GGVWT+ MH
Sbjct: 391 AAEAAPVPSATSSATESGEIPGTPPTPVPLRVTCDPAAVVAFSY-------KLETSTLLPLITISHESEDRDEGGCTNFSGLWEWVKTQDADVQ-ELLYPADPTTGEADTTGGAA---TGVWLLRTSVDVTNGVMFEVMGTEAEGGDSDKILLSSSPTNYFRIRGAGGHLYFYQTEVTSWVEEDLAPHMLPDDAEWGAEPRSYIGCLSEILEEGQTCD-GVAKKERGECRMDVIESIISYLGYEATESYGLSWKVRGLCDDLSNKDTLFESVRVYGDIKNSDIYGLWYGHYSYGHLGGVWTNNFMH 684
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 211 bits (536), Expect = 4.920e-61 Identity = 112/233 (48.07%), Postives = 147/233 (63.09%), Query Frame = 1
Query: 334 GCVTLTEMWQW---LQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSVGGDCDELKIRS-SPTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSSGDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVRGFCTDMTNPEVFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
GC TL++++ W +G P +L D A TT TG WL+ L V+ G T+ +G VGG+C EL+IRS S + +RGHGGNL T++ SWD D D RS+I C SEV+ DTC A + GECRMD+++SE+G++GY ASE+YGITWKVRGFC+D++NP+VFD+V VYGD+ DIHHM+YGMYS+GHQGGVWT+ LMH
Sbjct: 10 GCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDRVDETATTT-------TGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDG-----RSFIRCVSEVLTGEDTC----AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMH 226
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI) HSP 1 Score: 198 bits (503), Expect = 1.290e-56 Identity = 105/241 (43.57%), Postives = 146/241 (60.58%), Query Frame = 1
Query: 301 IEHASGDRTELGCVTLTEMWQWLQS-GPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSVGGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSSGDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVRGFCTDMTNPEVFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
+E A T GCVTL ++W+ GP LY VDP +G T+A TG WL+ L V +G+T+++ G+ GGD DEL++ S+ +R HGG+LD T + SWD + D++ G RSYI+ SE++ + D G A+ GE RMD+ SE+G++GY+ SESYG+TWKVRGFC D +NPEVFD+V VYG++ + DIHHM +G+Y+YGHQ G W MH
Sbjct: 57 LESADNGTTRGGCVTLGQIWESRAGKGP-------LYAVDPDSGNVSTSA------TGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPD--EDETDG---RSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMH 279
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 197 bits (502), Expect = 7.830e-56 Identity = 109/244 (44.67%), Postives = 150/244 (61.48%), Query Frame = 1
Query: 319 DRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSVGGDCDELKIRSS-PTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSSGDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVR---------GFCTDMTNPEVFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
D GC TLT+++ + + +G LY +D +G+ IT ++V T WL+ L V+NG G+ GGDCDEL+I+S+ P + VRGHGG++ T++ SWD + + RS++ C SE + +TCD G A+ D GECRMD++ SE+G+MG+F SESYG+TWKVR GFC D++NP+VF+ VYGDI N DIHHM+YG YSYGHQGGVWT+ MH
Sbjct: 16 DAESEGCFTLTDLYNFRGTENDGSSKGPLYMLD-GSGSKITAPTSV---TKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQ-----ETYEGGRSFLNCVSEKLT-GETCD-GMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMH 248
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 197 bits (500), Expect = 3.870e-55 Identity = 105/241 (43.57%), Postives = 145/241 (60.17%), Query Frame = 1
Query: 301 IEHASGDRTELGCVTLTEMWQWLQS-GPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSVGGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSSGDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVRGFCTDMTNPEVFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
+E A T GCVTL ++W+ GP LY VDP +G T+A TG WL+ L V +G+T+ + G+ GGD DEL++ S+ +R HGG+LD T + SWD + D++ G RSYI+ SE++ + D G A+ GE RMD+ SE+G++GY+ SESYG+TWKVRGFC D +NPEVFD+V VYG++ + DIHHM +G+Y+YGHQ G W MH
Sbjct: 57 LESADNGTTRGGCVTLGQIWESRAGKGP-------LYAVDPDSGNVSTSA------TGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPD--EDETDG---RSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMH 279
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE) HSP 1 Score: 191 bits (486), Expect = 8.860e-55 Identity = 110/270 (40.74%), Postives = 155/270 (57.41%), Query Frame = 1
Query: 211 AKTVCDPDAALSFTYDSREEDEEIEGSLVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSVGGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSSGDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVRGFCTDMTNPEVFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
+K CD D A+S Y S + + +E A G+ T GCVTL ++W+ + P LY VDP +G + E TG WL+ L V +G+T+ + GT GGD DEL++ S+ +R HGG+LD T + SWD + D++ G RSYI+ SE++ + D G A+ GE RMD+ SE+G++G+ SESYG+TWKVRGFC D +NP +FD V VYG++ + DIHHM +G+Y+YGHQ G W MH
Sbjct: 38 SKPDCDSDIAVSIRYASSTK-------RLYLESADGE-TRGGCVTLGQIWE---NRAGKAP---LYAVDPESG------NESENETGTWLLTEELYVEDGITLKVYGTGEGGDADELRLLSTTDTYINLRAHGGSLDFVGTKVFSWDTSTNSPD--EDETDG---RSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFDEVNVYGNMYDSDIHHMRFGLYTYGHQQGDWRRNKMH 282 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12680.2048.1 >prot_E-fasciculatus_F_contig12680.2048.1 ID=prot_E-fasciculatus_F_contig12680.2048.1|Name=mRNA_E-fasciculatus_F_contig12680.2048.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=340bp AASTPAPTSASREVASTTTAPAAPAITPSPVGTPAPVAMTASPVIVATTAback to top mRNA from alignment at E-fasciculatus_F_contig12680:12..3589+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12680.2048.1 ID=mRNA_E-fasciculatus_F_contig12680.2048.1|Name=mRNA_E-fasciculatus_F_contig12680.2048.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3578bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12680:12..3589+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12680:12..3589+ >mRNA_E-fasciculatus_F_contig12680.2048.1 ID=mRNA_E-fasciculatus_F_contig12680.2048.1|Name=mRNA_E-fasciculatus_F_contig12680.2048.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2040bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12680:12..3589+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |