mRNA_E-fasciculatus_F_contig12680.2048.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12680.2048.1
Unique NamemRNA_E-fasciculatus_F_contig12680.2048.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: A0A6H5JNF4_9PHAE (MEP16 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF4_9PHAE)

HSP 1 Score: 568 bits (1463), Expect = 7.900e-201
Identity = 298/337 (88.43%), Postives = 306/337 (90.80%), Query Frame = 1
Query:   10 TPAPTSASREVASTTTAPAAPAITPSPVGTPXXXXMXXXXVIVATTAAPTPAAGEPGSPGVPPTPVPAKTVCDPDAALSFTYDSREEDEEIEGSLVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSVGGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSSGDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVRGFCTDMTNPEVFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
            TPAPT  SREV STTTAPA            XXXX XXXX +V       PA GEPGSPGVPP PVPAKTVCDP A LSFTYD+RE DEEIEGSLVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTM+LKGTSVGGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDE+LLTAHILADDS+GDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMV+SELGHMGYFASESYGITWKVRGFC DM+NPEVFDNV VYGDITNCDIHHMWYGMYSYGHQGGVWTD+LMH
Sbjct:   45 TPAPTPGSREVPSTTTAPA------XXXXXXXXXXXXXXXXVVTAXXXXXPATGEPGSPGVPPIPVPAKTVCDPAAELSFTYDARE-DEEIEGSLVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMNLKGTSVGGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDENLLTAHILADDSTGDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVDSELGHMGYFASESYGITWKVRGFCEDMSNPEVFDNVNVYGDITNCDIHHMWYGMYSYGHQGGVWTDSLMH 374          
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: D7FWW1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW1_ECTSI)

HSP 1 Score: 513 bits (1321), Expect = 1.400e-178
Identity = 247/260 (95.00%), Postives = 256/260 (98.46%), Query Frame = 1
Query:  241 LSFTYDSREEDEEIEGSLVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSVGGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSSGDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVRGFCTDMTNPEVFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
            LSFTYD+RE DEEIEG+LVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTM+LKGTSVGGDCDELKIRSS TLIHAVRGHGGNLDIYKTLIQSWDE+LLTAHILADDS+GDEPRSYIAC+SEVVNENDTCDSGYAREDKGECRMDMV+SELGHMGYFASESYGITWKVRGFC DM+NPEVFDNV VYGDITNCDIHHMWYGMYSYGHQGGVWTD+LMH
Sbjct:   51 LSFTYDARE-DEEIEGALVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMNLKGTSVGGDCDELKIRSSTTLIHAVRGHGGNLDIYKTLIQSWDENLLTAHILADDSTGDEPRSYIACTSEVVNENDTCDSGYAREDKGECRMDMVDSELGHMGYFASESYGITWKVRGFCEDMSNPEVFDNVNVYGDITNCDIHHMWYGMYSYGHQGGVWTDSLMH 309          
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: D7G257_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G257_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 3.390e-93
Identity = 154/283 (54.42%), Postives = 196/283 (69.26%), Query Frame = 1
Query:  178 GSPGVPPTPVPAKTVCDPDAALSFTYDSREEDEEIEGSLVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSVGGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSSGDEPRSYIACSSEVVNEND-TCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVRGFCTDMTNPE-VFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
            GSPG PPTPVP K VCD  A LSF Y      E+ +  LVT+ HASGDR+E GC+TLT+++ WL + P  VPT +L  VD  T  A+    T    TG+WL+ TS+ ++NGVT ++KGTS+GGDCDELK  S+    + + GHGGN+DI  T+++SWD      HIL D   G   RS+IAC SEVV + D TCD G A+ D GECRMD+V+S + + GY  +ESYGITWKVRG C D++N + +FD+V+VYGD+ N DI+ MWYG YSYGH GGVWTD LMH
Sbjct:  320 GSPGFPPTPVPDKVVCDDSAELSFVYTL----EDTKRPLVTVAHASGDRSEAGCLTLTKLYDWLATEPADVPTGMLLTVDSTTETAVN--GTTATPTGIWLLDTSVVITNGVTFEIKGTSIGGDCDELKFSSTKKAWNRIMGHGGNIDIDSTVVRSWDASKTLDHILKDSDDGTTNRSFIACVSEVVVDADETCD-GTAQNDMGECRMDIVDSTVAYFGYDETESYGITWKVRGLCDDLSNKDTLFDSVRVYGDMKNSDIYGMWYGHYSYGHLGGVWTDNLMH 595          
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: D7G261_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G261_ECTSI)

HSP 1 Score: 273 bits (697), Expect = 3.160e-82
Identity = 140/286 (48.95%), Postives = 194/286 (67.83%), Query Frame = 1
Query:  184 PGVPPTPVPAKTVCDPDAALSFTYDSREEDEEIEGS----LVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSV-GGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSS-GDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVRGFCTDMTNPE-VFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
            PG PPTPVP +  CDP A ++F+Y       ++E S    L+TI H S DR E GC   + +W+W+++    V  +LLYP DP TG A TT       TGVWL+RTS+ V+NGV  ++ GT   GGD D++ + SSPT    +RG GG+L  Y+T + SW E+ L  H L DD+  G EPRSYI C SE++ E  TCD G A++++GECRMD++ES + ++GY A+ESYG++WKVRG CTD++N + +FD+V+VYGD+ + DI+ +WYG YSYGH GG+WT+  MH
Sbjct:  215 PGTPPTPVPPRVTCDPAAVVAFSY-------KLETSTLLPLITISHESEDRDEGGCTNFSGLWEWVKAQDADVQ-ELLYPADPTTGEADTTGGAA---TGVWLLRTSVDVTNGVMFEVMGTQAEGGDSDKILLSSSPTNYFRIRGAGGHLYFYQTEVTSWVEEDLAPHTLPDDAEWGAEPRSYIGCLSEILEEGQTCD-GVAKKERGECRMDVIESIISYLGYEATESYGLSWKVRGLCTDLSNQDTLFDSVRVYGDLQDSDIYGLWYGHYSYGHLGGMWTNNFMH 488          
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: A0A6H5J745_9PHAE (MEP21 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J745_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 7.600e-80
Identity = 147/306 (48.04%), Postives = 202/306 (66.01%), Query Frame = 1
Query:  139 ATTAAPTPAAGEPGS-----PGVPPTPVPAKTVCDPDAALSFTYDSREEDEEIEGS----LVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSV-GGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSS-GDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVRGFCTDMTNPE-VFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
            A  AAP P+A    +     PG PPTPVP +  CDP A ++F+Y       ++E S    L+TI H S DR E GC   + +W+W+++    V  +LLYP DP TG A TT       TGVWL+RTS+ V+NGV  ++ GT   GGD D++ + SSPT    +RG GG+L  Y+T + SW E+ L  H+L DD+  G EPRSYI C SE++ E  TCD G A++++GECRMD++ES + ++GY A+ESYG++WKVRG C D++N + +F++V+VYGDI N DI+ +WYG YSYGH GGVWT+  MH
Sbjct:  391 AAEAAPVPSATSSATESGEIPGTPPTPVPLRVTCDPAAVVAFSY-------KLETSTLLPLITISHESEDRDEGGCTNFSGLWEWVKTQDADVQ-ELLYPADPTTGEADTTGGAA---TGVWLLRTSVDVTNGVMFEVMGTEAEGGDSDKILLSSSPTNYFRIRGAGGHLYFYQTEVTSWVEEDLAPHMLPDDAEWGAEPRSYIGCLSEILEEGQTCD-GVAKKERGECRMDVIESIISYLGYEATESYGLSWKVRGLCDDLSNKDTLFESVRVYGDIKNSDIYGLWYGHYSYGHLGGVWTNNFMH 684          
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 4.920e-61
Identity = 112/233 (48.07%), Postives = 147/233 (63.09%), Query Frame = 1
Query:  334 GCVTLTEMWQW---LQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSVGGDCDELKIRS-SPTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSSGDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVRGFCTDMTNPEVFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
            GC TL++++ W     +G    P  +L   D     A TT       TG WL+   L V+ G T+  +G  VGG+C EL+IRS S +    +RGHGGNL    T++ SWD D         D      RS+I C SEV+   DTC    A  + GECRMD+++SE+G++GY ASE+YGITWKVRGFC+D++NP+VFD+V VYGD+   DIHHM+YGMYS+GHQGGVWT+ LMH
Sbjct:   10 GCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDRVDETATTT-------TGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDG-----RSFIRCVSEVLTGEDTC----AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMH 226          
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 1.290e-56
Identity = 105/241 (43.57%), Postives = 146/241 (60.58%), Query Frame = 1
Query:  301 IEHASGDRTELGCVTLTEMWQWLQS-GPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSVGGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSSGDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVRGFCTDMTNPEVFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
            +E A    T  GCVTL ++W+     GP       LY VDP +G   T+A      TG WL+   L V +G+T+++ G+  GGD DEL++ S+      +R HGG+LD   T + SWD    +     D++ G   RSYI+  SE++ + D    G A+   GE RMD+  SE+G++GY+ SESYG+TWKVRGFC D +NPEVFD+V VYG++ + DIHHM +G+Y+YGHQ G W    MH
Sbjct:   57 LESADNGTTRGGCVTLGQIWESRAGKGP-------LYAVDPDSGNVSTSA------TGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPD--EDETDG---RSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMH 279          
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 7.830e-56
Identity = 109/244 (44.67%), Postives = 150/244 (61.48%), Query Frame = 1
Query:  319 DRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSVGGDCDELKIRSS-PTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSSGDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVR---------GFCTDMTNPEVFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
            D    GC TLT+++ +  +  +G     LY +D  +G+ IT  ++V   T  WL+   L V+NG      G+  GGDCDEL+I+S+ P   + VRGHGG++    T++ SWD             + +  RS++ C SE +   +TCD G A+ D GECRMD++ SE+G+MG+F SESYG+TWKVR         GFC D++NP+VF+   VYGDI N DIHHM+YG YSYGHQGGVWT+  MH
Sbjct:   16 DAESEGCFTLTDLYNFRGTENDGSSKGPLYMLD-GSGSKITAPTSV---TKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQ-----ETYEGGRSFLNCVSEKLT-GETCD-GMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMH 248          
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 3.870e-55
Identity = 105/241 (43.57%), Postives = 145/241 (60.17%), Query Frame = 1
Query:  301 IEHASGDRTELGCVTLTEMWQWLQS-GPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSVGGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSSGDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVRGFCTDMTNPEVFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
            +E A    T  GCVTL ++W+     GP       LY VDP +G   T+A      TG WL+   L V +G+T+ + G+  GGD DEL++ S+      +R HGG+LD   T + SWD    +     D++ G   RSYI+  SE++ + D    G A+   GE RMD+  SE+G++GY+ SESYG+TWKVRGFC D +NPEVFD+V VYG++ + DIHHM +G+Y+YGHQ G W    MH
Sbjct:   57 LESADNGTTRGGCVTLGQIWESRAGKGP-------LYAVDPDSGNVSTSA------TGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPD--EDETDG---RSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMH 279          
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 8.860e-55
Identity = 110/270 (40.74%), Postives = 155/270 (57.41%), Query Frame = 1
Query:  211 AKTVCDPDAALSFTYDSREEDEEIEGSLVTIEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTASTVEELTGVWLVRTSLAVSNGVTMDLKGTSVGGDCDELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDEDLLTAHILADDSSGDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVRGFCTDMTNPEVFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH 1020
            +K  CD D A+S  Y S  +        + +E A G+ T  GCVTL ++W+   +     P   LY VDP +G      +  E  TG WL+   L V +G+T+ + GT  GGD DEL++ S+      +R HGG+LD   T + SWD    +     D++ G   RSYI+  SE++ + D    G A+   GE RMD+  SE+G++G+  SESYG+TWKVRGFC D +NP +FD V VYG++ + DIHHM +G+Y+YGHQ G W    MH
Sbjct:   38 SKPDCDSDIAVSIRYASSTK-------RLYLESADGE-TRGGCVTLGQIWE---NRAGKAP---LYAVDPESG------NESENETGTWLLTEELYVEDGITLKVYGTGEGGDADELRLLSTTDTYINLRAHGGSLDFVGTKVFSWDTSTNSPD--EDETDG---RSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFDEVNVYGNMYDSDIHHMRFGLYTYGHQQGDWRRNKMH 282          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12680.2048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNF4_9PHAE7.900e-20188.43MEP16 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FWW1_ECTSI1.400e-17895.00Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G257_ECTSI3.390e-9354.42Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7G261_ECTSI3.160e-8248.95Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5J745_9PHAE7.600e-8048.04MEP21 protein (Fragment) n=1 Tax=Ectocarpus sp. CC... [more]
D7FRR8_ECTSI4.920e-6148.07Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FXE5_ECTSI1.290e-5643.57Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JGU8_9PHAE7.830e-5644.67MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G339_ECTSI3.870e-5543.57Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
A0A6H5JU98_9PHAE8.860e-5540.74MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12680contigE-fasciculatus_F_contig12680:12..3589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score195.3
Seed ortholog evalue4.7e-47
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons6
Model size1020
Cds size1020
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12680.2048.1prot_E-fasciculatus_F_contig12680.2048.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12680 12..3589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927775.4510093-CDS-E-fasciculatus_F_contig12680:11..4071622927775.4510093-CDS-E-fasciculatus_F_contig12680:11..407Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12680 12..407 +
1695995688.7794468-CDS-E-fasciculatus_F_contig12680:11..4071695995688.7794468-CDS-E-fasciculatus_F_contig12680:11..407Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12680 12..407 +
1622927775.464624-CDS-E-fasciculatus_F_contig12680:790..9521622927775.464624-CDS-E-fasciculatus_F_contig12680:790..952Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12680 791..952 +
1695995688.7983384-CDS-E-fasciculatus_F_contig12680:790..9521695995688.7983384-CDS-E-fasciculatus_F_contig12680:790..952Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12680 791..952 +
1622927775.4748483-CDS-E-fasciculatus_F_contig12680:1886..19641622927775.4748483-CDS-E-fasciculatus_F_contig12680:1886..1964Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12680 1887..1964 +
1695995688.8070076-CDS-E-fasciculatus_F_contig12680:1886..19641695995688.8070076-CDS-E-fasciculatus_F_contig12680:1886..1964Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12680 1887..1964 +
1622927775.4852958-CDS-E-fasciculatus_F_contig12680:2486..25821622927775.4852958-CDS-E-fasciculatus_F_contig12680:2486..2582Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12680 2487..2582 +
1695995688.8151326-CDS-E-fasciculatus_F_contig12680:2486..25821695995688.8151326-CDS-E-fasciculatus_F_contig12680:2486..2582Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12680 2487..2582 +
1622927775.4952216-CDS-E-fasciculatus_F_contig12680:3074..32091622927775.4952216-CDS-E-fasciculatus_F_contig12680:3074..3209Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12680 3075..3209 +
1695995688.8237417-CDS-E-fasciculatus_F_contig12680:3074..32091695995688.8237417-CDS-E-fasciculatus_F_contig12680:3074..3209Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12680 3075..3209 +
1622927775.5366979-CDS-E-fasciculatus_F_contig12680:3436..35891622927775.5366979-CDS-E-fasciculatus_F_contig12680:3436..3589Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12680 3437..3589 +
1695995688.832241-CDS-E-fasciculatus_F_contig12680:3436..35891695995688.832241-CDS-E-fasciculatus_F_contig12680:3436..3589Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12680 3437..3589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12680.2048.1

>prot_E-fasciculatus_F_contig12680.2048.1 ID=prot_E-fasciculatus_F_contig12680.2048.1|Name=mRNA_E-fasciculatus_F_contig12680.2048.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=340bp
AASTPAPTSASREVASTTTAPAAPAITPSPVGTPAPVAMTASPVIVATTA
APTPAAGEPGSPGVPPTPVPAKTVCDPDAALSFTYDSREEDEEIEGSLVT
IEHASGDRTELGCVTLTEMWQWLQSGPEGVPTDLLYPVDPATGAAITTAS
TVEELTGVWLVRTSLAVSNGVTMDLKGTSVGGDCDELKIRSSPTLIHAVR
GHGGNLDIYKTLIQSWDEDLLTAHILADDSSGDEPRSYIACSSEVVNEND
TCDSGYAREDKGECRMDMVESELGHMGYFASESYGITWKVRGFCTDMTNP
EVFDNVQVYGDITNCDIHHMWYGMYSYGHQGGVWTDTLMH
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mRNA from alignment at E-fasciculatus_F_contig12680:12..3589+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12680.2048.1 ID=mRNA_E-fasciculatus_F_contig12680.2048.1|Name=mRNA_E-fasciculatus_F_contig12680.2048.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3578bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12680:12..3589+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGCCTCCACCCCCGCCCCCACCTCGGCCTCCCGCGAGGTGGCCTCCAC CACCACCGCGCCCGCGGCGCCGGCGATAACGCCTTCCCCGGTAGGAACTC CCGCCCCAGTGGCAATGACCGCCTCCCCCGTAATTGTAGCAACGACCGCC GCCCCGACACCGGCCGCCGGAGAGCCGGGGTCCCCGGGGGTCCCGCCGAC TCCGGTGCCCGCCAAGACGGTGTGCGACCCGGACGCGGCGCTGTCGTTCA CGTACGACTCGAGGGAGGAGGACGAGGAGATCGAGGGGTCGCTCGTGACG ATCGAGCACGCCAGCGGGGACCGGACGGAGCTCGGCTGCGTGACGCTGAC GGAGATGTGGCAGTGGCTGCAGTCGGGCCCGGAGGGGGTGCCCACGGTGA GGCGGGGGGGCGGGGTCTCGAATTTTGTTCACTTGAGGGAGGGAGGAGTT GTCGATGTTGTCGCGGCTGGTGCATTAAAATTTGGGATGCACGGAAGGAA TGTGGGGGTGTTGTTCGGTGGGAGGAAGTAACGTGTAGAGCGCCGCTGCT GTTTATATTGTCGTTTCAAAAGCGTTGCGACTGCTAAATAGGTGTTTTTG TGCGTCCTGAGATTTTTTCTCTCTGTTTCCGCGCGGCGATAGATCTCCCC CGCTATACCACCACAGGCGTGCGCGTCATGTGCCCCCGCCCTCGGGCTAT CGCACCCCAAAACACAATTTCCGGGCGGCACTAAATTTGACCCTAACGAC GACGACGACGACGACGATGACGATGACAGGACCTCCTTTACCCGGTCGAC CCGGCCACCGGTGCCGCCATCACGACAGCGTCGACAGTGGAGGAACTTAC CGGAGTGTGGCTCGTGAGAACGTCGTTGGCCGTCTCTAACGGTGTGACGA TGGACCTCAAGGGCACCTCCGTCGGGGGCGACTGTGACGAGGTTGGTTGA AGGTTCATGCCCGTGCTGTTGCTTTTTTTTTGTGTGAGGGAGAGTCACCA CGCTCTCAAGCTCTCAGCTGACTTCATGACGTCATGCCGGGTTCCGCCGC ATTTGGTGTGAGCAAAACAGTGTGTGGGAAAACGTAAAGTAGGGACCACC GGGATGTTGATGTTGGTGTACGTTTTGCTTTCTGTTCTTCACTTCAAATC AGTGCTCGCGGTGTCTGTGCCGTTTTACTCCATCCCGTGGTCGCACAGAA GGGTGCCGTTCCTCTCCCTGAGGCTCTATTCCCGCCTCTTCTGCGGTTCA TTGCCTTCGATTTCTATGCGAAAAGAGTGCAGCAATCTGTTCCCCCGGTG TGTACACACGAACCATTTTTACGCTTTCCACCTATAGGCCAGCAACGGAA GCGAGATAAAAAAAAAACTCACTTTTGCAAGAAAAGCTCGCTTCCCCTGG TGTCGAGTAGCCCTTGTAATTTCGGACAGACTACTTGTACAGAGTAGCCC TTGAAAACCAGCGCCAAAGGGTGATGGGCGAGGGGGAGGGGTTTTTGCAA CGGAGCATCGGTGGTGTCCGTAGACGTGATCAGGAGGAAAATGTTACAGC TCAGCTTTACTTTGACCTAGGAACGATTTGAGGAGAGCGCAGCTCGTTGC GCACACGTCCCAACCCAACCGACGTGCCTGAACACACGGCTTGAAACCGA AACGAACCGAATCGAACACACGGAATGATTCCGCCACGAACACACGGTGT GGGAATGATTCCGCAACGAACACGCGGTATGAAACGACAACGCGACATAA AACCGTAACGAGCACACGACTTGAAACCTCACACGGAATGAACCGTACCG AACAACTGGGATGAAACCGTAGCTAACACATGACTTCAAACCTCACGAAC GCACGACTTGAAACCGTATCGACAGCTGAAGATCAGGAGCTCGCCGACCT TGATCCACGCCGTCCGGGGGCATGGCGGCAACCTCGACATCTACAAGACT TTGGTGCGTGCGTGTGACTTGCAGGCGAGGGGGGGGCTATGCACGATGTT TGCCCTTGATTCCTTGTCTGGAATCGTTTTGTGTGTTTCGGTCCGGTGAG TCGCTGGTCCGTTGTAGTTGTTGTTGTTGTTGTTGGTGGTGCTGTTGATT CTGTTTCAAGGTTTGGTGAGCGGACTTCTTACCTACGCGACATGCTCAGA CGTGTTGCTGCTGACGTTTTACAGAAATGCTGCTCGACGACAGTGCTTGT GCTTATTGTTGCTGTTGTCGTTGTTGTGTCGCTGTTGTTGTTGATGAAAA TAATGATGATTTGGTGCTGTTGTTGTTGGTGATCGTGATGTCGCAGTCGT TTTGGTGATTACTGTGTTGTTTGTCGTCGTTTTTGGACAATTTAATGACG ATGATGTTGATGATCATCTCTGTTGCTATCGGTGATGATGCCGTAGTCGT TGTGGTGATTTTGGTGGGGTTGGTTGTCGTTTGACAATTTTTATTTCGTT GCTGTTGTTGTTATTTTCCCCTCAGATCCAGAGCTGGGACGAAGATCTGC TGACGGCCCACATCCTGGCCGACGACAGCAGCGGGGACGAGCCCCGCTCC TACATCGCCTGCAGCAGCGAGGTGTGAAGCGTGTCAAGTGTGTCATACCA GGTTGACGAGCCAGGAGACGGTGTTCACCATTGGATGTTGACAGTTTTCC TGCTCCCTGAGTTCGAGAATTAGTAATGCAACGTTTGGCCCTATTTTTGG GTCTCGCGAGATCGAAGGCAAGGAACGAGCGTGCCTTCGCGCTTGCGTTC GTGCGTTTTCAGCAGATTGTATTGTATTCTCATTATATATATATTTTTTT TTTCCTCTTGTTTGTTGTATGTGACTTGGTTTTCCCGGTGTTTTCCTCTT TATACAGTTTTTGCTGTTTTGCGTACCACCTTGTTTCTCGTTTTATTTTG GTTTTATATCATCATATCATCCCCACGCATTCTCGTCGCTCACAGCAGTG TCCACCTGCATCACGGAAGTGTATCAATGTTTAACCCCCTATGTAATTAG ACGGAAGCTTCTTAACTGCTCCACTCTTTGATGTGTGCGCGTTGCTTGCA CTTACTACTGCAGGTGGTCAACGAGAACGACACGTGCGACTCGGGGTACG CGAGGGAGGACAAGGGCGAGTGCCGGATGGACATGGTCGAAAGCGAGCTG GGGCACATGGGCTACTTCGCCTCGGAATCCTACGGCATCACCTGGAAGGT GGGGTGGGGTGGGGTGGGGTGGGGTGGGGTGGGGTGGGGTGGATTCTTCT GTGTAAATTCGATCCAAGGTGGACAGCAGTGTATCGATTGTACTAAAACC AAACCCTGCCTCTGTTTCATGAAGGAGCGCGAGTTGATGTACGGGTGTCA CCCGGAATACATACCCGTTCATGTTTTTTTTCTCCTCCTCCTCCTCCCTT GAATGTTCTTCGTGTTGGGGTTCAGGTCCGAGGTTTCTGCACGGACATGA CCAACCCCGAGGTGTTCGATAACGTGCAAGTCTACGGAGACATCACGAAC TGCGACATCCACCACATGTGGTACGGCATGTACAGCTACGGCCACCAGGG GGGGGTCTGGACCGACACCCTCATGCAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12680:12..3589+

>mRNA_E-fasciculatus_F_contig12680.2048.1 ID=mRNA_E-fasciculatus_F_contig12680.2048.1|Name=mRNA_E-fasciculatus_F_contig12680.2048.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2040bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12680:12..3589+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGCCTCCACCCCCGCCCCCACCTCGGCCTCCCGCGAGGTGGCCTCCAC
CACCACCGCGCCCGCGGCGCCGGCGATAACGCCTTCCCCGGTAGGAACTC
CCGCCCCAGTGGCAATGACCGCCTCCCCCGTAATTGTAGCAACGACCGCC
GCCCCGACACCGGCCGCCGGAGAGCCGGGGTCCCCGGGGGTCCCGCCGAC
TCCGGTGCCCGCCAAGACGGTGTGCGACCCGGACGCGGCGCTGTCGTTCA
CGTACGACTCGAGGGAGGAGGACGAGGAGATCGAGGGGTCGCTCGTGACG
ATCGAGCACGCCAGCGGGGACCGGACGGAGCTCGGCTGCGTGACGCTGAC
GGAGATGTGGCAGTGGCTGCAGTCGGGCCCGGAGGGGGTGCCCACGGCAG
CCTCCACCCCCGCCCCCACCTCGGCCTCCCGCGAGGTGGCCTCCACCACC
ACCGCGCCCGCGGCGCCGGCGATAACGCCTTCCCCGGTAGGAACTCCCGC
CCCAGTGGCAATGACCGCCTCCCCCGTAATTGTAGCAACGACCGCCGCCC
CGACACCGGCCGCCGGAGAGCCGGGGTCCCCGGGGGTCCCGCCGACTCCG
GTGCCCGCCAAGACGGTGTGCGACCCGGACGCGGCGCTGTCGTTCACGTA
CGACTCGAGGGAGGAGGACGAGGAGATCGAGGGGTCGCTCGTGACGATCG
AGCACGCCAGCGGGGACCGGACGGAGCTCGGCTGCGTGACGCTGACGGAG
ATGTGGCAGTGGCTGCAGTCGGGCCCGGAGGGGGTGCCCACGGACCTCCT
TTACCCGGTCGACCCGGCCACCGGTGCCGCCATCACGACAGCGTCGACAG
TGGAGGAACTTACCGGAGTGTGGCTCGTGAGAACGTCGTTGGCCGTCTCT
AACGGTGTGACGATGGACCTCAAGGGCACCTCCGTCGGGGGCGACTGTGA
CGAGGACCTCCTTTACCCGGTCGACCCGGCCACCGGTGCCGCCATCACGA
CAGCGTCGACAGTGGAGGAACTTACCGGAGTGTGGCTCGTGAGAACGTCG
TTGGCCGTCTCTAACGGTGTGACGATGGACCTCAAGGGCACCTCCGTCGG
GGGCGACTGTGACGAGCTGAAGATCAGGAGCTCGCCGACCTTGATCCACG
CCGTCCGGGGGCATGGCGGCAACCTCGACATCTACAAGACTTTGCTGAAG
ATCAGGAGCTCGCCGACCTTGATCCACGCCGTCCGGGGGCATGGCGGCAA
CCTCGACATCTACAAGACTTTGATCCAGAGCTGGGACGAAGATCTGCTGA
CGGCCCACATCCTGGCCGACGACAGCAGCGGGGACGAGCCCCGCTCCTAC
ATCGCCTGCAGCAGCGAGATCCAGAGCTGGGACGAAGATCTGCTGACGGC
CCACATCCTGGCCGACGACAGCAGCGGGGACGAGCCCCGCTCCTACATCG
CCTGCAGCAGCGAGGTGGTCAACGAGAACGACACGTGCGACTCGGGGTAC
GCGAGGGAGGACAAGGGCGAGTGCCGGATGGACATGGTCGAAAGCGAGCT
GGGGCACATGGGCTACTTCGCCTCGGAATCCTACGGCATCACCTGGAAGG
TGGTCAACGAGAACGACACGTGCGACTCGGGGTACGCGAGGGAGGACAAG
GGCGAGTGCCGGATGGACATGGTCGAAAGCGAGCTGGGGCACATGGGCTA
CTTCGCCTCGGAATCCTACGGCATCACCTGGAAGGTCCGAGGTTTCTGCA
CGGACATGACCAACCCCGAGGTGTTCGATAACGTGCAAGTCTACGGAGAC
ATCACGAACTGCGACATCCACCACATGTGGTACGGCATGTACAGCTACGG
CCACCAGGGGGGGGTCTGGACCGACACCCTCATGCACGTCCGAGGTTTCT
GCACGGACATGACCAACCCCGAGGTGTTCGATAACGTGCAAGTCTACGGA
GACATCACGAACTGCGACATCCACCACATGTGGTACGGCATGTACAGCTA
CGGCCACCAGGGGGGGGTCTGGACCGACACCCTCATGCAC
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