mRNA_E-fasciculatus_F_contig12575.1968.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: D8LCR7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCR7_ECTSI) HSP 1 Score: 295 bits (754), Expect = 1.850e-99 Identity = 159/166 (95.78%), Postives = 159/166 (95.78%), Query Frame = 1
Query: 1 MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKAALRMTEEVAAEPEAAA-PE-VPAGPAMSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 492
MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKA LRM EEVAAEPEAA PE VPAGPAMSASIPFL QPKNLEGMVGDIGFDPFGFATIFP KFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN
Sbjct: 1 MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKA-LRMAEEVAAEPEAAVEPEPVPAGPAMSASIPFLEQPKNLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 165
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A7S4DC05_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DC05_HETAK) HSP 1 Score: 147 bits (370), Expect = 6.700e-42 Identity = 74/120 (61.67%), Postives = 88/120 (73.33%), Query Frame = 1
Query: 121 LRMTEEVAAEPEAAAPEVPAGPAMSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEW 480
L M EE AA PA MS S+PFL PKN GM+GD GFDPFGF+ F K+MREAELKHGRV+MLAVVG+LVS+ VH+PG AY S NP++A++ VGP P+ QIFLFCGFLE+
Sbjct: 30 LNMAEEGAA--------APAPMEMSKSMPFLAAPKNTAGMIGDKGFDPFGFSDTFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIEALSMVGPQPLAQIFLFCGFLEF 141
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A6V1U3D5_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U3D5_HETAK) HSP 1 Score: 146 bits (368), Expect = 8.840e-42 Identity = 67/101 (66.34%), Postives = 81/101 (80.20%), Query Frame = 1
Query: 190 MSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 492
MS S+PFL PKN GM+GD GFDPFGF+ F K+MREAELKHGRV+MLAVVG+LVS+ VH+PG AY S NP+DA++ VGP P+ QIFLFCGFLE+ +
Sbjct: 1 MSKSMPFLAAPKNTAGMIGDKGFDPFGFSDDFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIDALSMVGPQPLAQIFLFCGFLEFTMNK 101
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A835Z4D2_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D2_9STRA) HSP 1 Score: 137 bits (346), Expect = 2.130e-38 Identity = 62/101 (61.39%), Postives = 78/101 (77.23%), Query Frame = 1
Query: 190 MSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 492
MS S+PFL +PK L+G VG+ FDPF + + P F+RE+ELKHGR+AMLAVVG++VSE++H+PG AY + NPVDA+ VG PMLQIF FCGFLE FH
Sbjct: 1 MSKSLPFLVKPKQLDGWVGNAEFDPFSLSELLPMAFVRESELKHGRIAMLAVVGFVVSELIHIPGEAYQASNPVDAVNMVGAQPMLQIFAFCGFLESVFHK 101
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: W7TJ16_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ16_9STRA) HSP 1 Score: 127 bits (319), Expect = 6.630e-33 Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 1
Query: 184 PAMSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 492
P S S+PFL +PKNL+GMVGD+GFDP G A +++REAELK+GRVAMLA +G++V E + +PG Y N V A VGP P++QIFLFCGFLE+ H
Sbjct: 125 PVFSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHK 227
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A7S2FU49_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU49_9STRA) HSP 1 Score: 113 bits (282), Expect = 3.160e-28 Identity = 56/101 (55.45%), Postives = 67/101 (66.34%), Query Frame = 1
Query: 190 MSASIPFLTQPKNLE-----GMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLE 477
MS S+PF+ PK ++ GMVGD+GFDP G A F KF+REAELKHGRVAMLA+VG + E H+PG Y NP+ A A VGP QI LF GF+E
Sbjct: 38 MSPSVPFMLMPKYVKDKDAAGMVGDVGFDPLGLAEFFDIKFLREAELKHGRVAMLAIVGIITQEFFHIPGELYQDPNPLTAAAKVGPQVWGQIILFGGFVE 138
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A7S4DBU8_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBU8_HETAK) HSP 1 Score: 107 bits (266), Expect = 5.620e-27 Identity = 52/77 (67.53%), Postives = 60/77 (77.92%), Query Frame = 1
Query: 175 PAGPAMSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSEN 405
PA MS S+PFL PKN GM+GD GFDPFGF+ F K+MREAELKHGRV+MLAVVG+LVS+ VH+PG AY S N
Sbjct: 39 PAPVEMSKSMPFLAAPKNTAGMIGDKGFDPFGFSDDFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTN 115
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A7S0T6N2_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6N2_9RHOD) HSP 1 Score: 106 bits (265), Expect = 1.020e-25 Identity = 50/101 (49.50%), Postives = 71/101 (70.30%), Query Frame = 1
Query: 193 SASIPFLTQPKNL-EGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 492
SAS+PFL++P N+ E MVG GFDP G +T A+F++E+E+KHGR+ MLAVVG+LV EVVH+PG + ++ +A + V G + QIF+ CG E+ H
Sbjct: 34 SASVPFLSKPANIDESMVGYTGFDPLGLSTYLSARFLQESEIKHGRICMLAVVGFLVQEVVHLPGEVFSAKLATEAFSKVPTGGLWQIFIACGVAEYIGHK 134
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A7S3ZSN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSN6_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.120e-25 Identity = 53/106 (50.00%), Postives = 67/106 (63.21%), Query Frame = 1
Query: 190 MSASIPFLTQPKNLEGMVGD-IGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHV----PGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 492
MS ++PFLT PK L+G +G+ GFDP GFA I K+MREAE+KHGRVAMLA +G+ E+ PG AY NP+ A AV P Q+ LFCG +EW +
Sbjct: 64 MSKALPFLTAPKGLKGYIGEEAGFDPVGFAEIMDIKWMREAEIKHGRVAMLATIGYTYPEMPWFAQAFPGDAYSHSNPIKAALAVPPEAWAQVVLFCGVMEWSLNG 169
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A2V3IEU1_9FLOR (Chlorophyll a-b binding protein, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEU1_9FLOR) HSP 1 Score: 106 bits (264), Expect = 1.740e-25 Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 1
Query: 187 AMSASIPFLTQPKNLEGMV-GDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVV-HVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLE 477
A S S+PFL QP L+G + GD+GFDP GF+ +F F+REAE+KHGR+ MLA+VGW+ E V H+P Y + NP+DA+ VG P++QI LF E
Sbjct: 39 AASKSVPFLPQPAKLDGTLPGDVGFDPLGFSDMFDLNFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEMYSATNPLDAIGKVGWLPVIQILLFIAACE 137 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12575.1968.1 >prot_E-fasciculatus_F_contig12575.1968.1 ID=prot_E-fasciculatus_F_contig12575.1968.1|Name=mRNA_E-fasciculatus_F_contig12575.1968.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=164bp MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKAALRMTEEVAAEback to top mRNA from alignment at E-fasciculatus_F_contig12575:3189..3680- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12575.1968.1 ID=mRNA_E-fasciculatus_F_contig12575.1968.1|Name=mRNA_E-fasciculatus_F_contig12575.1968.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=492bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12575:3189..3680- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12575:3189..3680- >mRNA_E-fasciculatus_F_contig12575.1968.1 ID=mRNA_E-fasciculatus_F_contig12575.1968.1|Name=mRNA_E-fasciculatus_F_contig12575.1968.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=984bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12575:3189..3680- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |