prot_E-fasciculatus_F_contig12575.1968.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12575.1968.1
Unique Nameprot_E-fasciculatus_F_contig12575.1968.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length164
Homology
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: D8LCR7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCR7_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 1.850e-99
Identity = 159/166 (95.78%), Postives = 159/166 (95.78%), Query Frame = 0
Query:    1 MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKAALRMTEEVAAEPEAAA-PE-VPAGPAMSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 164
            MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKA LRM EEVAAEPEAA  PE VPAGPAMSASIPFL QPKNLEGMVGDIGFDPFGFATIFP KFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN
Sbjct:    1 MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKA-LRMAEEVAAEPEAAVEPEPVPAGPAMSASIPFLEQPKNLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 165          
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A7S4DC05_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DC05_HETAK)

HSP 1 Score: 147 bits (370), Expect = 6.700e-42
Identity = 74/120 (61.67%), Postives = 88/120 (73.33%), Query Frame = 0
Query:   41 LRMTEEVAAEPEAAAPEVPAGPAMSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEW 160
            L M EE AA         PA   MS S+PFL  PKN  GM+GD GFDPFGF+  F  K+MREAELKHGRV+MLAVVG+LVS+ VH+PG AY S NP++A++ VGP P+ QIFLFCGFLE+
Sbjct:   30 LNMAEEGAA--------APAPMEMSKSMPFLAAPKNTAGMIGDKGFDPFGFSDTFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIEALSMVGPQPLAQIFLFCGFLEF 141          
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A6V1U3D5_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U3D5_HETAK)

HSP 1 Score: 146 bits (368), Expect = 8.840e-42
Identity = 67/101 (66.34%), Postives = 81/101 (80.20%), Query Frame = 0
Query:   64 MSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 164
            MS S+PFL  PKN  GM+GD GFDPFGF+  F  K+MREAELKHGRV+MLAVVG+LVS+ VH+PG AY S NP+DA++ VGP P+ QIFLFCGFLE+  + 
Sbjct:    1 MSKSMPFLAAPKNTAGMIGDKGFDPFGFSDDFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIDALSMVGPQPLAQIFLFCGFLEFTMNK 101          
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A835Z4D2_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D2_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.130e-38
Identity = 62/101 (61.39%), Postives = 78/101 (77.23%), Query Frame = 0
Query:   64 MSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 164
            MS S+PFL +PK L+G VG+  FDPF  + + P  F+RE+ELKHGR+AMLAVVG++VSE++H+PG AY + NPVDA+  VG  PMLQIF FCGFLE  FH 
Sbjct:    1 MSKSLPFLVKPKQLDGWVGNAEFDPFSLSELLPMAFVRESELKHGRIAMLAVVGFVVSELIHIPGEAYQASNPVDAVNMVGAQPMLQIFAFCGFLESVFHK 101          
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: W7TJ16_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ16_9STRA)

HSP 1 Score: 127 bits (319), Expect = 6.630e-33
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 0
Query:   62 PAMSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 164
            P  S S+PFL +PKNL+GMVGD+GFDP G A     +++REAELK+GRVAMLA +G++V E + +PG  Y   N V A   VGP P++QIFLFCGFLE+  H 
Sbjct:  125 PVFSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHK 227          
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A7S2FU49_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU49_9STRA)

HSP 1 Score: 113 bits (282), Expect = 3.160e-28
Identity = 56/101 (55.45%), Postives = 67/101 (66.34%), Query Frame = 0
Query:   64 MSASIPFLTQPKNLE-----GMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLE 159
            MS S+PF+  PK ++     GMVGD+GFDP G A  F  KF+REAELKHGRVAMLA+VG +  E  H+PG  Y   NP+ A A VGP    QI LF GF+E
Sbjct:   38 MSPSVPFMLMPKYVKDKDAAGMVGDVGFDPLGLAEFFDIKFLREAELKHGRVAMLAIVGIITQEFFHIPGELYQDPNPLTAAAKVGPQVWGQIILFGGFVE 138          
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A7S4DBU8_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBU8_HETAK)

HSP 1 Score: 107 bits (266), Expect = 5.620e-27
Identity = 52/77 (67.53%), Postives = 60/77 (77.92%), Query Frame = 0
Query:   59 PAGPAMSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSEN 135
            PA   MS S+PFL  PKN  GM+GD GFDPFGF+  F  K+MREAELKHGRV+MLAVVG+LVS+ VH+PG AY S N
Sbjct:   39 PAPVEMSKSMPFLAAPKNTAGMIGDKGFDPFGFSDDFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTN 115          
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A7S0T6N2_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6N2_9RHOD)

HSP 1 Score: 106 bits (265), Expect = 1.020e-25
Identity = 50/101 (49.50%), Postives = 71/101 (70.30%), Query Frame = 0
Query:   65 SASIPFLTQPKNL-EGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 164
            SAS+PFL++P N+ E MVG  GFDP G +T   A+F++E+E+KHGR+ MLAVVG+LV EVVH+PG  + ++   +A + V  G + QIF+ CG  E+  H 
Sbjct:   34 SASVPFLSKPANIDESMVGYTGFDPLGLSTYLSARFLQESEIKHGRICMLAVVGFLVQEVVHLPGEVFSAKLATEAFSKVPTGGLWQIFIACGVAEYIGHK 134          
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A7S3ZSN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSN6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.120e-25
Identity = 53/106 (50.00%), Postives = 67/106 (63.21%), Query Frame = 0
Query:   64 MSASIPFLTQPKNLEGMVGD-IGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHV----PGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 164
            MS ++PFLT PK L+G +G+  GFDP GFA I   K+MREAE+KHGRVAMLA +G+   E+       PG AY   NP+ A  AV P    Q+ LFCG +EW  + 
Sbjct:   64 MSKALPFLTAPKGLKGYIGEEAGFDPVGFAEIMDIKWMREAEIKHGRVAMLATIGYTYPEMPWFAQAFPGDAYSHSNPIKAALAVPPEAWAQVVLFCGVMEWSLNG 169          
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A2V3IEU1_9FLOR (Chlorophyll a-b binding protein, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEU1_9FLOR)

HSP 1 Score: 106 bits (264), Expect = 1.740e-25
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 0
Query:   63 AMSASIPFLTQPKNLEGMV-GDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVV-HVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLE 159
            A S S+PFL QP  L+G + GD+GFDP GF+ +F   F+REAE+KHGR+ MLA+VGW+  E V H+P   Y + NP+DA+  VG  P++QI LF    E
Sbjct:   39 AASKSVPFLPQPAKLDGTLPGDVGFDPLGFSDMFDLNFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEMYSATNPLDAIGKVGWLPVIQILLFIAACE 137          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCR7_ECTSI1.850e-9995.78Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A7S4DC05_HETAK6.700e-4261.67Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A6V1U3D5_HETAK8.840e-4266.34Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A835Z4D2_9STRA2.130e-3861.39Chlorophyll a/b-binding protein domain-containing ... [more]
W7TJ16_9STRA6.630e-3356.31Light-harvesting protein n=1 Tax=Nannochloropsis g... [more]
A0A7S2FU49_9STRA3.160e-2855.45Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S4DBU8_HETAK5.620e-2767.53Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S0T6N2_9RHOD1.020e-2549.50Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A7S3ZSN6_9STRA1.120e-2550.00Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A2V3IEU1_9FLOR1.740e-2551.52Chlorophyll a-b binding protein, chloroplastic n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 74..162
e-value: 5.7E-21
score: 75.7
IPR023329Chlorophyll a/b binding domain superfamilyGENE3D1.10.3460.10coord: 68..164
e-value: 3.1E-18
score: 68.2
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 14..128
NoneNo IPR availablePANTHERPTHR21649:SF7CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTICcoord: 14..128
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..164
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 63..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12575contigE-fasciculatus_F_contig12575:3189..3680 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12575.1968.1mRNA_E-fasciculatus_F_contig12575.1968.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12575 3189..3680 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12575.1968.1 ID=prot_E-fasciculatus_F_contig12575.1968.1|Name=mRNA_E-fasciculatus_F_contig12575.1968.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=164bp
MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKAALRMTEEVAAE
PEAAAPEVPAGPAMSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFM
REAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQ
IFLFCGFLEWKFHN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR023329Chlorophyll_a/b-bd_dom_sf
IPR022796Chloroa_b-bind