mRNA_E-fasciculatus_F_contig12575.1968.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12575.1968.1
Unique NamemRNA_E-fasciculatus_F_contig12575.1968.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: D8LCR7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCR7_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 1.850e-99
Identity = 159/166 (95.78%), Postives = 159/166 (95.78%), Query Frame = 1
Query:    1 MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKAALRMTEEVAAEPEAAA-PE-VPAGPAMSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 492
            MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKA LRM EEVAAEPEAA  PE VPAGPAMSASIPFL QPKNLEGMVGDIGFDPFGFATIFP KFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN
Sbjct:    1 MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKA-LRMAEEVAAEPEAAVEPEPVPAGPAMSASIPFLEQPKNLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 165          
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A7S4DC05_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DC05_HETAK)

HSP 1 Score: 147 bits (370), Expect = 6.700e-42
Identity = 74/120 (61.67%), Postives = 88/120 (73.33%), Query Frame = 1
Query:  121 LRMTEEVAAEPEAAAPEVPAGPAMSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEW 480
            L M EE AA         PA   MS S+PFL  PKN  GM+GD GFDPFGF+  F  K+MREAELKHGRV+MLAVVG+LVS+ VH+PG AY S NP++A++ VGP P+ QIFLFCGFLE+
Sbjct:   30 LNMAEEGAA--------APAPMEMSKSMPFLAAPKNTAGMIGDKGFDPFGFSDTFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIEALSMVGPQPLAQIFLFCGFLEF 141          
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A6V1U3D5_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U3D5_HETAK)

HSP 1 Score: 146 bits (368), Expect = 8.840e-42
Identity = 67/101 (66.34%), Postives = 81/101 (80.20%), Query Frame = 1
Query:  190 MSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 492
            MS S+PFL  PKN  GM+GD GFDPFGF+  F  K+MREAELKHGRV+MLAVVG+LVS+ VH+PG AY S NP+DA++ VGP P+ QIFLFCGFLE+  + 
Sbjct:    1 MSKSMPFLAAPKNTAGMIGDKGFDPFGFSDDFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIDALSMVGPQPLAQIFLFCGFLEFTMNK 101          
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A835Z4D2_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D2_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.130e-38
Identity = 62/101 (61.39%), Postives = 78/101 (77.23%), Query Frame = 1
Query:  190 MSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 492
            MS S+PFL +PK L+G VG+  FDPF  + + P  F+RE+ELKHGR+AMLAVVG++VSE++H+PG AY + NPVDA+  VG  PMLQIF FCGFLE  FH 
Sbjct:    1 MSKSLPFLVKPKQLDGWVGNAEFDPFSLSELLPMAFVRESELKHGRIAMLAVVGFVVSELIHIPGEAYQASNPVDAVNMVGAQPMLQIFAFCGFLESVFHK 101          
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: W7TJ16_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ16_9STRA)

HSP 1 Score: 127 bits (319), Expect = 6.630e-33
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 1
Query:  184 PAMSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 492
            P  S S+PFL +PKNL+GMVGD+GFDP G A     +++REAELK+GRVAMLA +G++V E + +PG  Y   N V A   VGP P++QIFLFCGFLE+  H 
Sbjct:  125 PVFSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHK 227          
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A7S2FU49_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU49_9STRA)

HSP 1 Score: 113 bits (282), Expect = 3.160e-28
Identity = 56/101 (55.45%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  190 MSASIPFLTQPKNLE-----GMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLE 477
            MS S+PF+  PK ++     GMVGD+GFDP G A  F  KF+REAELKHGRVAMLA+VG +  E  H+PG  Y   NP+ A A VGP    QI LF GF+E
Sbjct:   38 MSPSVPFMLMPKYVKDKDAAGMVGDVGFDPLGLAEFFDIKFLREAELKHGRVAMLAIVGIITQEFFHIPGELYQDPNPLTAAAKVGPQVWGQIILFGGFVE 138          
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A7S4DBU8_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBU8_HETAK)

HSP 1 Score: 107 bits (266), Expect = 5.620e-27
Identity = 52/77 (67.53%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  175 PAGPAMSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSEN 405
            PA   MS S+PFL  PKN  GM+GD GFDPFGF+  F  K+MREAELKHGRV+MLAVVG+LVS+ VH+PG AY S N
Sbjct:   39 PAPVEMSKSMPFLAAPKNTAGMIGDKGFDPFGFSDDFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTN 115          
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A7S0T6N2_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6N2_9RHOD)

HSP 1 Score: 106 bits (265), Expect = 1.020e-25
Identity = 50/101 (49.50%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  193 SASIPFLTQPKNL-EGMVGDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 492
            SAS+PFL++P N+ E MVG  GFDP G +T   A+F++E+E+KHGR+ MLAVVG+LV EVVH+PG  + ++   +A + V  G + QIF+ CG  E+  H 
Sbjct:   34 SASVPFLSKPANIDESMVGYTGFDPLGLSTYLSARFLQESEIKHGRICMLAVVGFLVQEVVHLPGEVFSAKLATEAFSKVPTGGLWQIFIACGVAEYIGHK 134          
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A7S3ZSN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSN6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.120e-25
Identity = 53/106 (50.00%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  190 MSASIPFLTQPKNLEGMVGD-IGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVVHV----PGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHN 492
            MS ++PFLT PK L+G +G+  GFDP GFA I   K+MREAE+KHGRVAMLA +G+   E+       PG AY   NP+ A  AV P    Q+ LFCG +EW  + 
Sbjct:   64 MSKALPFLTAPKGLKGYIGEEAGFDPVGFAEIMDIKWMREAEIKHGRVAMLATIGYTYPEMPWFAQAFPGDAYSHSNPIKAALAVPPEAWAQVVLFCGVMEWSLNG 169          
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Match: A0A2V3IEU1_9FLOR (Chlorophyll a-b binding protein, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEU1_9FLOR)

HSP 1 Score: 106 bits (264), Expect = 1.740e-25
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 1
Query:  187 AMSASIPFLTQPKNLEGMV-GDIGFDPFGFATIFPAKFMREAELKHGRVAMLAVVGWLVSEVV-HVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLE 477
            A S S+PFL QP  L+G + GD+GFDP GF+ +F   F+REAE+KHGR+ MLA+VGW+  E V H+P   Y + NP+DA+  VG  P++QI LF    E
Sbjct:   39 AASKSVPFLPQPAKLDGTLPGDVGFDPLGFSDMFDLNFLREAEVKHGRICMLAIVGWVFPEAVYHLPNEMYSATNPLDAIGKVGWLPVIQILLFIAACE 137          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12575.1968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCR7_ECTSI1.850e-9995.78Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A7S4DC05_HETAK6.700e-4261.67Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A6V1U3D5_HETAK8.840e-4266.34Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A835Z4D2_9STRA2.130e-3861.39Chlorophyll a/b-binding protein domain-containing ... [more]
W7TJ16_9STRA6.630e-3356.31Light-harvesting protein n=1 Tax=Nannochloropsis g... [more]
A0A7S2FU49_9STRA3.160e-2855.45Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S4DBU8_HETAK5.620e-2767.53Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S0T6N2_9RHOD1.020e-2549.50Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A7S3ZSN6_9STRA1.120e-2550.00Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A2V3IEU1_9FLOR1.740e-2551.52Chlorophyll a-b binding protein, chloroplastic n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12575contigE-fasciculatus_F_contig12575:3189..3680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score295.8
Seed ortholog evalue1.2e-77
Seed eggNOG ortholog2880.D8LCR7
Preferred nameLhcr1
KEGG koko:K08907,ko:K08910
KEGG Pathwayko00196,map00196
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2D9V2@1,2S5EH@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-03_001900.1
Exons1
Model size492
Cds size492
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927763.8296454-CDS-E-fasciculatus_F_contig12575:3188..36801622927763.8296454-CDS-E-fasciculatus_F_contig12575:3188..3680Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12575 3189..3680 -
1695995684.3136406-CDS-E-fasciculatus_F_contig12575:3188..36801695995684.3136406-CDS-E-fasciculatus_F_contig12575:3188..3680Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12575 3189..3680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12575.1968.1prot_E-fasciculatus_F_contig12575.1968.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12575 3189..3680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12575.1968.1

>prot_E-fasciculatus_F_contig12575.1968.1 ID=prot_E-fasciculatus_F_contig12575.1968.1|Name=mRNA_E-fasciculatus_F_contig12575.1968.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=164bp
MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKAALRMTEEVAAE
PEAAAPEVPAGPAMSASIPFLTQPKNLEGMVGDIGFDPFGFATIFPAKFM
REAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQ
IFLFCGFLEWKFHN
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mRNA from alignment at E-fasciculatus_F_contig12575:3189..3680-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12575.1968.1 ID=mRNA_E-fasciculatus_F_contig12575.1968.1|Name=mRNA_E-fasciculatus_F_contig12575.1968.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=492bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12575:3189..3680- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGGTCATCTCTACCGTAGGCGCTGGCCTGGCGTGCGCTTCCTGCGC CTCGGCGTTCGTAGCACCTTCCTCCTTTTCCCGGGTGATCAGCAGCTCTC CCGCAGCATCGAAGGCGGCGCTACGCATGACGGAGGAGGTCGCCGCCGAG CCGGAGGCGGCGGCGCCGGAGGTGCCCGCGGGCCCGGCGATGTCCGCGTC CATCCCCTTCTTGACCCAGCCCAAGAACCTGGAGGGCATGGTCGGAGACA TCGGCTTCGACCCGTTCGGGTTCGCTACCATCTTCCCCGCTAAGTTCATG AGGGAGGCCGAGCTCAAGCACGGCCGCGTTGCGATGCTTGCTGTGGTGGG GTGGCTCGTGTCGGAGGTGGTGCACGTGCCCGGGGCGGCGTACATGTCGG AGAACCCCGTGGATGCTATGGCGGCGGTCGGGCCCGGCCCCATGTTGCAG ATCTTCTTGTTCTGCGGGTTCCTGGAGTGGAAATTCCACAAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12575:3189..3680-

>mRNA_E-fasciculatus_F_contig12575.1968.1 ID=mRNA_E-fasciculatus_F_contig12575.1968.1|Name=mRNA_E-fasciculatus_F_contig12575.1968.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=984bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12575:3189..3680- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGGTCATCTCTACCGTAGGCGCTGGCCTGGCGTGCGCTTCCTGCGC
CTCGGCGTTCGTAGCACCTTCCTCCTTTTCCCGGGTGATCAGCAGCTCTC
CCGCAGCATCGAAGGCGGCGCTACGCATGACGGAGGAGGTCGCCGCCGAG
CCGGAGGCGGCGGCGCCGGAGGTGCCCGCGGGCCCGGCGATGTCCGCGTC
CATCCCCTTCTTGACCCAGCCCAAGAACCTGGAGGGCATGGTCGGAGACA
TCGGCTTCGACCCGTTCGGGTTCGCTACCATCTTCCCCGCTAAGTTCATG
AGGGAGGCCGAGCTCAAGCACGGCCGCGTTGCGATGCTTGCTGTGGTGGG
GTGGCTCGTGTCGGAGGTGGTGCACGTGCCCGGGGCGGCGTACATGTCGG
AGAACCCCGTGGATGCTATGGCGGCGGTCGGGCCCGGCCCCATGTTGCAG
ATCTTCTTGTTCTGCGGGTTCCTGGAGTGGAAATTCCACAACATGAAGGT
CATCTCTACCGTAGGCGCTGGCCTGGCGTGCGCTTCCTGCGCCTCGGCGT
TCGTAGCACCTTCCTCCTTTTCCCGGGTGATCAGCAGCTCTCCCGCAGCA
TCGAAGGCGGCGCTACGCATGACGGAGGAGGTCGCCGCCGAGCCGGAGGC
GGCGGCGCCGGAGGTGCCCGCGGGCCCGGCGATGTCCGCGTCCATCCCCT
TCTTGACCCAGCCCAAGAACCTGGAGGGCATGGTCGGAGACATCGGCTTC
GACCCGTTCGGGTTCGCTACCATCTTCCCCGCTAAGTTCATGAGGGAGGC
CGAGCTCAAGCACGGCCGCGTTGCGATGCTTGCTGTGGTGGGGTGGCTCG
TGTCGGAGGTGGTGCACGTGCCCGGGGCGGCGTACATGTCGGAGAACCCC
GTGGATGCTATGGCGGCGGTCGGGCCCGGCCCCATGTTGCAGATCTTCTT
GTTCTGCGGGTTCCTGGAGTGGAAATTCCACAAC
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