mRNA_E-fasciculatus_F_contig12053.1602.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12053.1602.1 vs. uniprot
Match: D8LQU2_ECTSI (Major facilitator superfamily permease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU2_ECTSI) HSP 1 Score: 214 bits (545), Expect = 6.580e-64 Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 1
Query: 1 FPLLVSVGLCLVNFLMIAFVMPETLPDEKRVKKVDLKQANPLGAVTMATRNQLITGVFACWTLLWIAHVGLQINWINYTDRKFGWGVAQSGASLALMGLLVAVFPK 318
FPLLVSVGLCLVNF+MIAFVMPETLPDEKRVKKVDLKQANPLGAVTMATRNQLITGVFACWTLLWIAHVGLQINWINYTDRKFGWGVAQSGASLALMGLLVAVFPK
Sbjct: 438 FPLLVSVGLCLVNFVMIAFVMPETLPDEKRVKKVDLKQANPLGAVTMATRNQLITGVFACWTLLWIAHVGLQINWINYTDRKFGWGVAQSGASLALMGLLVAVFPK 543
BLAST of mRNA_E-fasciculatus_F_contig12053.1602.1 vs. uniprot
Match: A0A6H5J9A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9A0_9PHAE) HSP 1 Score: 214 bits (545), Expect = 6.680e-64 Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 1
Query: 1 FPLLVSVGLCLVNFLMIAFVMPETLPDEKRVKKVDLKQANPLGAVTMATRNQLITGVFACWTLLWIAHVGLQINWINYTDRKFGWGVAQSGASLALMGLLVAVFPK 318
FPLLVSVGLCLVNF+MIAFVMPETLPDEKRVKKVDLKQANPLGAVTMATRNQLITGVFACWTLLWIAHVGLQINWINYTDRKFGWGVAQSGASLALMGLLVAVFPK
Sbjct: 439 FPLLVSVGLCLVNFVMIAFVMPETLPDEKRVKKVDLKQANPLGAVTMATRNQLITGVFACWTLLWIAHVGLQINWINYTDRKFGWGVAQSGASLALMGLLVAVFPK 544
BLAST of mRNA_E-fasciculatus_F_contig12053.1602.1 vs. uniprot
Match: A0A7S2UWW0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWW0_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.150e-27 Identity = 55/106 (51.89%), Postives = 71/106 (66.98%), Query Frame = 1
Query: 4 PLLVSVGLCLVNFLMIAFVMPETLP-DEKRVKKVDLKQANPLGAVTMATRNQLITGVFACWTLLWIAHVGLQINWINYTDRKFGWGVAQSGASLALMGLLVAVFPK 318
PL V +GLC N A ++PE D R + +DL +ANP+GAV + R++L+ + A + W+AH GLQ+NWIN+TD KFGWG A SGASLA MGLLVA PK
Sbjct: 13 PLYVGMGLCSFNAAFTATLVPEPRARDNGRRRDLDLARANPVGAVKLLARSKLLVALSASYFCTWVAHSGLQVNWINFTDYKFGWGAATSGASLAFMGLLVAAMPK 118
BLAST of mRNA_E-fasciculatus_F_contig12053.1602.1 vs. uniprot
Match: A0A836CIS1_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIS1_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.430e-25 Identity = 53/106 (50.00%), Postives = 71/106 (66.98%), Query Frame = 1
Query: 1 FPLLVSVGLCLVNFLMIAFVMPETLPDEKRVKKVDLKQANPLGAVTMATRNQLITGVFACWTLLWIAHVGLQINWINYTDRKFGWGVAQSGASLALMGLLVAVFPK 318
F + VSV LC +N L+ VMPE+L +R VD ANP+GA+ + +R+ + G+ C+ L WIA+ GLQIN+ NYT++K W AQSG LALMG+LVAV PK
Sbjct: 99 FSVCVSVALCALNALLTGLVMPESLHRARRKPAVDFTMANPVGALRLLSRSPISLGISICYCLHWIANAGLQINFFNYTEKKLSWTPAQSGGGLALMGILVAVAPK 204
BLAST of mRNA_E-fasciculatus_F_contig12053.1602.1 vs. uniprot
Match: A0A7S2CZ70_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CZ70_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.710e-19 Identity = 48/107 (44.86%), Postives = 73/107 (68.22%), Query Frame = 1
Query: 4 PLLVSVGLCLVNFLMIAFVMPETLPDEKRV-KKVDLKQANPLGAVTMAT-RNQLITGVFACWTLLWIAHVGLQINWINYTDRKFGWGVAQSGASLALMGLLVAVFPK 318
PLL+ GL L+N +IAFV PE+LP +R +K+DL++ANP+GA+ + RN L+TG + L+++A + L + +Y KFGWG AQSG L L+GL++A+ P+
Sbjct: 239 PLLIGAGLQLLNAFLIAFVTPESLPASERAGRKLDLRKANPIGALKLLLGRNPLLTGSAVAYFLVYLAKLCLDSQFTDYALYKFGWGPAQSGPLLVLVGLMLAIVPR 345
BLAST of mRNA_E-fasciculatus_F_contig12053.1602.1 vs. uniprot
Match: A0A7S0TRX5_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TRX5_HEMAN) HSP 1 Score: 85.9 bits (211), Expect = 2.330e-17 Identity = 42/105 (40.00%), Postives = 68/105 (64.76%), Query Frame = 1
Query: 4 PLLVSVGLCLVNFLMIAFVMPETLPDEKRVKKVDLKQANPLGAVTMATRNQLITGVFACWTLLWIAHVGLQINWINYTDRKFGWGVAQSGASLALMGLLVAVFPK 318
P + S + VN L++ F++PE+ P++ R ++VDL ANP GA+ M + L+ GV + LLW AH GLQ+ W+N+ D + GW ++SG L++ G+ V++ PK
Sbjct: 249 PFIASAVIGFVNSLLV-FLIPESNPEDDR-REVDLANANPWGALRMLHEDPLMFGVAVTYFLLWFAHTGLQVTWMNFFDAQHGWPASKSGMVLSVFGIGVSIMPK 351
BLAST of mRNA_E-fasciculatus_F_contig12053.1602.1 vs. uniprot
Match: A0A7S2G8W7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G8W7_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 4.180e-17 Identity = 43/98 (43.88%), Postives = 67/98 (68.37%), Query Frame = 1
Query: 31 LVNFLMIAFVMPETLPDEKRV-KKVDLKQANPLGAVTMAT-RNQLITGVFACWTLLWIAHVGLQINWINYTDRKFGWGVAQSGASLALMGLLVAVFPK 318
L+N +IAFV PE+LP +R +K+DL++ANP+GA+ + RN L+TG + L+++A + L + +Y KFGWG AQSG L L+GL++A+ P+
Sbjct: 6 LLNAFLIAFVTPESLPASERAGRKLDLRKANPIGALKLLLGRNPLLTGSAVAYFLVYLAKLCLDSQFTDYALYKFGWGPAQSGPLLVLVGLMLAIVPR 103
BLAST of mRNA_E-fasciculatus_F_contig12053.1602.1 vs. uniprot
Match: A0A7S0VW17_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VW17_9CRYP) HSP 1 Score: 81.6 bits (200), Expect = 2.170e-16 Identity = 40/105 (38.10%), Postives = 66/105 (62.86%), Query Frame = 1
Query: 4 PLLVSVGLCLVNFLMIAFVMPETLPDEKRVKKVDLKQANPLGAVTMATRNQLITGVFACWTLLWIAHVGLQINWINYTDRKFGWGVAQSGASLALMGLLVAVFPK 318
P + S + VN L+++ + PE+ P++ R ++VDL ANP GA+ M N L G+ + LLW AH GLQ+ W+N+ + + GW ++SG L++ G+ ++V PK
Sbjct: 56 PFIASACIGAVNALLVSLI-PESNPEDLR-REVDLANANPWGALKMLHANPLTFGLAVSYFLLWFAHTGLQVTWMNFFETQHGWPASKSGIVLSVFGIGISVMPK 158
BLAST of mRNA_E-fasciculatus_F_contig12053.1602.1 vs. uniprot
Match: A0A1E4NI89_9GAMM (Tetracycline resistance MFS efflux pump n=2 Tax=Xanthomonadales TaxID=135614 RepID=A0A1E4NI89_9GAMM) HSP 1 Score: 81.3 bits (199), Expect = 8.610e-16 Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 1
Query: 4 PLLVSVGLCLVNFLMIAFVMPETLPDEKRVKKVDLKQANPLGAVTMATRNQLITGVFACWTLLWIAHVGLQINWINYTDRKFGWGVAQSGASLALMGLLVAV 309
P V+ GLCLVNF FV+PE+LP E+R K D + ANPLG++ + R + + + LL +A + ++ YTD ++GWG G +LAL+G+L V
Sbjct: 173 PFWVAAGLCLVNFCYGWFVLPESLPKERRAPKFDWRHANPLGSLLLLKRYPQVLALAMVFFLLALAQFSINSTYVLYTDFRYGWGPQTVGYTLALVGVLTGV 274
BLAST of mRNA_E-fasciculatus_F_contig12053.1602.1 vs. uniprot
Match: I4VIW2_9GAMM (Major facilitator superfamily protein n=4 Tax=Rhodanobacter TaxID=75309 RepID=I4VIW2_9GAMM) HSP 1 Score: 79.7 bits (195), Expect = 2.980e-15 Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 1
Query: 4 PLLVSVGLCLVNFLMIAFVMPETLPDEKRVKKVDLKQANPLGAVTMATRNQLITGVFACWTLLWIAHVGLQINWINYTDRKFGWGVAQSGASLALMGL 297
P V+ GL LVNF FV+PE+LP E+R K+ + + ANPLGAV + R + G+ A + L+ +A L ++ YTD +FGWG G +L L+GL
Sbjct: 138 PFWVAAGLSLVNFCYGWFVLPESLPPERRSKRFEWRHANPLGAVMLLRRYPQVFGLAAVFFLINLAQFSLNSTYVLYTDYRFGWGPQVVGYTLGLVGL 235 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12053.1602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12053.1602.1 >prot_E-fasciculatus_F_contig12053.1602.1 ID=prot_E-fasciculatus_F_contig12053.1602.1|Name=mRNA_E-fasciculatus_F_contig12053.1602.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=107bp FPLLVSVGLCLVNFLMIAFVMPETLPDEKRVKKVDLKQANPLGAVTMATRback to top mRNA from alignment at E-fasciculatus_F_contig12053:291..2114- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12053.1602.1 ID=mRNA_E-fasciculatus_F_contig12053.1602.1|Name=mRNA_E-fasciculatus_F_contig12053.1602.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1824bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12053:291..2114- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12053:291..2114- >mRNA_E-fasciculatus_F_contig12053.1602.1 ID=mRNA_E-fasciculatus_F_contig12053.1602.1|Name=mRNA_E-fasciculatus_F_contig12053.1602.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12053:291..2114- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |