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Homology
BLAST of mRNA_E-fasciculatus_F_contig10098.105.1 vs. uniprot
Match: A0A6H5KA31_9PHAE (RNA_pol_sigma70 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KA31_9PHAE) HSP 1 Score: 162 bits (411), Expect = 6.920e-42 Identity = 173/280 (61.79%), Postives = 185/280 (66.07%), Query Frame = 1 Query: 1 MVLTRRRLTAVCVVGAMCASAPPRTQGFAPPAGSFGRAHGAGDSFYCAERRLAAARLGESTSAASSPCRRDRRAATAVSRCCSMASGSRKAAARPGVAAXXXXXXXXXXXXXXXGRDRVPXXXXAA-VAIKDRAATEVGVVDKQARSRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGTA------EPKAGVVGGVAPPSKDVSPSVPXXXXXXXXXXXXXXXXXXXXD----YFKTLKKIKLLKPDEEVVLGRRIQRG---KRVAEKL 798
MVL RRRLTAVCVVGAMCASAPPRTQGFAPPA SFGR HGAGDSF+CAERRLAA LGESTSAAS+P R XXXXXXXXXXXX GRDRVP +A A+KDRAAT+VG VDKQ R+R XXXXXXXXXXXXXXXXXXXXXX E KA GGVAPPSK+VSPSVP XXXXXXXXXXX + YFKTLKKIKLLKPDEEVVLGR+IQRG +RV ++L
Sbjct: 1 MVLIRRRLTAVCVVGAMCASAPPRTQGFAPPA-SFGRTHGAGDSFHCAERRLAATSLGESTSAASAP-GRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRGRDRVPQSSSSAGAAVKDRAATDVGAVDKQLRARGAGSQARAPTVAAMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESKADTAGGVAPPSKEVSPSVPAKTVSAMXXXXXXXXXXXDANPLNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRL 278
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 142.5 |
| Seed ortholog evalue | 2.8e-31 |
| Seed eggNOG ortholog | 2880.D8LNI4 |
| EggNOG free text desc. | sigma factor activity |
| EggNOG OGs | 2QVXR@2759,COG0568@1 |
| COG Functional cat. | K |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | chloroplast |
| Ec32 ortholog description | RNA polymerase sigma factor, region 2 |
| Ec32 ortholog | Ec-24_002960.1 |
| Exons | 2 |
| Model size | 801 |
| Cds size | 801 |
| Stop | 1 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10098.105.1 >prot_E-fasciculatus_F_contig10098.105.1 ID=prot_E-fasciculatus_F_contig10098.105.1|Name=mRNA_E-fasciculatus_F_contig10098.105.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=267bp
MVLTRRRLTAVCVVGAMCASAPPRTQGFAPPAGSFGRAHGAGDSFYCAER
RLAAARLGESTSAASSPCRRDRRAATAVSRCCSMASGSRKAAARPGVAAR
SGAARAAASATRKRGRDRVPPPSSAAVAIKDRAATEVGVVDKQARSRAGG
GSHATAPGGGALANPPPQAKGFRRKNSGGKKKKTTGAGTAEPKAGVVGGV
APPSKDVSPSVPAVPGSAPSSSSSSSDANPLNDYFKTLKKIKLLKPDEEV
VLGRRIQRGKRVAEKL* back to topmRNA from alignment at E-fasciculatus_F_contig10098:529..1815- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10098.105.1 ID=mRNA_E-fasciculatus_F_contig10098.105.1|Name=mRNA_E-fasciculatus_F_contig10098.105.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1287bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10098:529..1815- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTTCTCACGCGGCGAAGATTGACGGCCGTGTGTGTGGTTGGGGCAAT
GTGTGCCTCGGCACCGCCACGAACACAGGGCTTCGCTCCACCAGCGGGCA
GCTTCGGTGAGACAGCGGCGTTGCACGACGAGTGAGCTGGGGCCCAAGCC
AGGCCGGTGCTCTCGGGGTGGGGTCTGAGCACTTACCGTGTTGCCTTAGC
TTTTCGCTGATTGTCGTGGTGGCGAGGCAGGGTGAAAAACAGCAGTTTGA
AGCTGCTGTCCGGTTTTTGTGTCGAATTACGCAGCGATTTTGCCTTTATG
TGTACGAACATGATTCCGCCCCAAGCTCTGAGTCAAAACTCAGATGCCAA
CATGTTCAGGAATTTGTACAGTCTCGTCTACATAACAAACTGAAGTTATG
ACCCTCTCATGTTCCCTCTCCGTGCATGTGCCAAAGTTGAAGTGCCGTGA
GCAGCACGCTTGTGTGAAAATTCCTGCCATAATGAAAAGGGAACAGCGAC
GTGCACACACACCAAATATGTTGAACGTCCCCTTGCCTACTGCTGCCACG
CACCATCCGCCAACCCCACCTCATCCCCCCCCTCCCTCCCAGGGCGAGCG
CACGGAGCCGGAGACTCTTTCTACTGCGCCGAGCGCCGATTAGCGGCAGC
AAGGCTGGGCGAAAGCACGTCAGCGGCGTCATCACCCTGCCGGCGTGATC
GCCGAGCGGCAACAGCGGTTTCGCGCTGCTGTAGCATGGCGTCCGGCAGC
CGAAAAGCGGCGGCTAGGCCGGGCGTAGCGGCCAGGTCGGGAGCGGCGAG
AGCGGCGGCGTCGGCGACGCGAAAGCGGGGTCGAGATAGGGTTCCGCCTC
CGTCTAGTGCGGCGGTAGCTATTAAGGATAGGGCCGCCACGGAGGTGGGG
GTAGTAGACAAGCAAGCGCGGAGTAGGGCGGGAGGAGGCTCGCACGCAAC
AGCACCGGGCGGTGGGGCGTTGGCGAACCCGCCGCCGCAGGCCAAGGGCT
TCAGAAGAAAAAACAGCGGTGGCAAGAAAAAGAAGACCACCGGCGCCGGC
ACCGCCGAACCGAAGGCAGGAGTGGTGGGAGGAGTTGCACCACCTTCGAA
GGACGTTTCGCCTTCCGTCCCCGCCGTGCCTGGCTCCGCCCCTTCGTCGT
CGTCGTCGTCGTCTGACGCTAACCCCCTCAACGACTACTTCAAGACCCTC
AAGAAGATCAAGCTGCTCAAGCCAGACGAGGAAGTTGTCCTTGGACGACG
AATCCAGAGAGGTAAGCGTGTAGCGGAAAAACTCTAA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10098:529..1815- >mRNA_E-fasciculatus_F_contig10098.105.1 ID=mRNA_E-fasciculatus_F_contig10098.105.1|Name=mRNA_E-fasciculatus_F_contig10098.105.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1602bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10098:529..1815- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTTCTCACGCGGCGAAGATTGACGGCCGTGTGTGTGGTTGGGGCAAT
GTGTGCCTCGGCACCGCCACGAACACAGGGCTTCGCTCCACCAGCGGGCA
GCTTCGATGGTTCTCACGCGGCGAAGATTGACGGCCGTGTGTGTGGTTGG
GGCAATGTGTGCCTCGGCACCGCCACGAACACAGGGCTTCGCTCCACCAG
CGGGCAGCTTCGGGCGAGCGCACGGAGCCGGAGACTCTTTCTACTGCGCC
GAGCGCCGATTAGCGGCAGCAAGGCTGGGCGAAAGCACGTCAGCGGCGTC
ATCACCCTGCCGGCGTGATCGCCGAGCGGCAACAGCGGTTTCGCGCTGCT
GTAGCATGGCGTCCGGCAGCCGAAAAGCGGCGGCTAGGCCGGGCGTAGCG
GCCAGGTCGGGAGCGGCGAGAGCGGCGGCGTCGGCGACGCGAAAGCGGGG
TCGAGATAGGGTTCCGCCTCCGTCTAGTGCGGCGGTAGCTATTAAGGATA
GGGCCGCCACGGAGGTGGGGGTAGTAGACAAGCAAGCGCGGAGTAGGGCG
GGAGGAGGCTCGCACGCAACAGCACCGGGCGGTGGGGCGTTGGCGAACCC
GCCGCCGCAGGCCAAGGGCTTCAGAAGAAAAAACAGCGGTGGCAAGAAAA
AGAAGACCACCGGCGCCGGCACCGCCGAACCGAAGGCAGGAGTGGTGGGA
GGAGTTGCACCACCTTCGAAGGACGTTTCGCCTTCCGTCCCCGCCGTGCC
TGGCTCCGCCCCTTCGTCGTCGTCGTCGTCGTCTGACGCTAACCCCCTCA
ACGACTACTTCAAGACCCTCAAGAAGATCAAGCTGCTCAAGCCAGACGAG
GAAGTTGTCCTTGGACGACGAATCCAGAGAGGTAAGCGTGTAGCGGAAAA
ACTCTAAGGCGAGCGCACGGAGCCGGAGACTCTTTCTACTGCGCCGAGCG
CCGATTAGCGGCAGCAAGGCTGGGCGAAAGCACGTCAGCGGCGTCATCAC
CCTGCCGGCGTGATCGCCGAGCGGCAACAGCGGTTTCGCGCTGCTGTAGC
ATGGCGTCCGGCAGCCGAAAAGCGGCGGCTAGGCCGGGCGTAGCGGCCAG
GTCGGGAGCGGCGAGAGCGGCGGCGTCGGCGACGCGAAAGCGGGGTCGAG
ATAGGGTTCCGCCTCCGTCTAGTGCGGCGGTAGCTATTAAGGATAGGGCC
GCCACGGAGGTGGGGGTAGTAGACAAGCAAGCGCGGAGTAGGGCGGGAGG
AGGCTCGCACGCAACAGCACCGGGCGGTGGGGCGTTGGCGAACCCGCCGC
CGCAGGCCAAGGGCTTCAGAAGAAAAAACAGCGGTGGCAAGAAAAAGAAG
ACCACCGGCGCCGGCACCGCCGAACCGAAGGCAGGAGTGGTGGGAGGAGT
TGCACCACCTTCGAAGGACGTTTCGCCTTCCGTCCCCGCCGTGCCTGGCT
CCGCCCCTTCGTCGTCGTCGTCGTCGTCTGACGCTAACCCCCTCAACGAC
TACTTCAAGACCCTCAAGAAGATCAAGCTGCTCAAGCCAGACGAGGAAGT
TGTCCTTGGACGACGAATCCAGAGAGGTAAGCGTGTAGCGGAAAAACTCT
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