mRNA_E-fasciculatus_F_contig10098.105.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10098.105.1 vs. uniprot
Match: A0A6H5KA31_9PHAE (RNA_pol_sigma70 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KA31_9PHAE) HSP 1 Score: 162 bits (411), Expect = 6.920e-42 Identity = 173/280 (61.79%), Postives = 185/280 (66.07%), Query Frame = 1 Query: 1 MVLTRRRLTAVCVVGAMCASAPPRTQGFAPPAGSFGRAHGAGDSFYCAERRLAAARLGESTSAASSPCRRDRRAATAVSRCCSMASGSRKAAARPGVAAXXXXXXXXXXXXXXXGRDRVPXXXXAA-VAIKDRAATEVGVVDKQARSRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGTA------EPKAGVVGGVAPPSKDVSPSVPXXXXXXXXXXXXXXXXXXXXD----YFKTLKKIKLLKPDEEVVLGRRIQRG---KRVAEKL 798
MVL RRRLTAVCVVGAMCASAPPRTQGFAPPA SFGR HGAGDSF+CAERRLAA LGESTSAAS+P R XXXXXXXXXXXX GRDRVP +A A+KDRAAT+VG VDKQ R+R XXXXXXXXXXXXXXXXXXXXXX E KA GGVAPPSK+VSPSVP XXXXXXXXXXX + YFKTLKKIKLLKPDEEVVLGR+IQRG +RV ++L
Sbjct: 1 MVLIRRRLTAVCVVGAMCASAPPRTQGFAPPA-SFGRTHGAGDSFHCAERRLAATSLGESTSAASAP-GRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRGRDRVPQSSSSAGAAVKDRAATDVGAVDKQLRARGAGSQARAPTVAAMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESKADTAGGVAPPSKEVSPSVPAKTVSAMXXXXXXXXXXXDANPLNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRL 278 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10098.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10098.105.1 >prot_E-fasciculatus_F_contig10098.105.1 ID=prot_E-fasciculatus_F_contig10098.105.1|Name=mRNA_E-fasciculatus_F_contig10098.105.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=267bp MVLTRRRLTAVCVVGAMCASAPPRTQGFAPPAGSFGRAHGAGDSFYCAERback to top mRNA from alignment at E-fasciculatus_F_contig10098:529..1815- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10098.105.1 ID=mRNA_E-fasciculatus_F_contig10098.105.1|Name=mRNA_E-fasciculatus_F_contig10098.105.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1287bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10098:529..1815- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10098:529..1815- >mRNA_E-fasciculatus_F_contig10098.105.1 ID=mRNA_E-fasciculatus_F_contig10098.105.1|Name=mRNA_E-fasciculatus_F_contig10098.105.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1602bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10098:529..1815- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |