mRNA_E-fasciculatus_F_contig10098.105.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10098.105.1
Unique NamemRNA_E-fasciculatus_F_contig10098.105.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10098.105.1 vs. uniprot
Match: A0A6H5KA31_9PHAE (RNA_pol_sigma70 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KA31_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 6.920e-42
Identity = 173/280 (61.79%), Postives = 185/280 (66.07%), Query Frame = 1 
Query:    1 MVLTRRRLTAVCVVGAMCASAPPRTQGFAPPAGSFGRAHGAGDSFYCAERRLAAARLGESTSAASSPCRRDRRAATAVSRCCSMASGSRKAAARPGVAAXXXXXXXXXXXXXXXGRDRVPXXXXAA-VAIKDRAATEVGVVDKQARSRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGTA------EPKAGVVGGVAPPSKDVSPSVPXXXXXXXXXXXXXXXXXXXXD----YFKTLKKIKLLKPDEEVVLGRRIQRG---KRVAEKL 798
            MVL RRRLTAVCVVGAMCASAPPRTQGFAPPA SFGR HGAGDSF+CAERRLAA  LGESTSAAS+P  R                             XXXXXXXXXXXX   GRDRVP    +A  A+KDRAAT+VG VDKQ R+R               XXXXXXXXXXXXXXXXXXXXXX            E KA   GGVAPPSK+VSPSVP       XXXXXXXXXXX  +    YFKTLKKIKLLKPDEEVVLGR+IQRG   +RV ++L
Sbjct:    1 MVLIRRRLTAVCVVGAMCASAPPRTQGFAPPA-SFGRTHGAGDSFHCAERRLAATSLGESTSAASAP-GRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKRGRDRVPQSSSSAGAAVKDRAATDVGAVDKQLRARGAGSQARAPTVAAMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESKADTAGGVAPPSKEVSPSVPAKTVSAMXXXXXXXXXXXDANPLNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRL 278
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10098.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KA31_9PHAE6.920e-4261.79RNA_pol_sigma70 domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10098contigE-fasciculatus_F_contig10098:529..1815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.5
Seed ortholog evalue2.8e-31
Seed eggNOG ortholog2880.D8LNI4
EggNOG free text desc.sigma factor activity
EggNOG OGs2QVXR@2759,COG0568@1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionRNA polymerase sigma factor, region 2
Ec32 orthologEc-24_002960.1
Exons2
Model size801
Cds size801
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927511.2749436-CDS-E-fasciculatus_F_contig10098:528..12231622927511.2749436-CDS-E-fasciculatus_F_contig10098:528..1223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10098 529..1223 -
1695995571.6237154-CDS-E-fasciculatus_F_contig10098:528..12231695995571.6237154-CDS-E-fasciculatus_F_contig10098:528..1223Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10098 529..1223 -
1622927511.2858741-CDS-E-fasciculatus_F_contig10098:1709..18151622927511.2858741-CDS-E-fasciculatus_F_contig10098:1709..1815Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10098 1710..1815 -
1695995571.6346843-CDS-E-fasciculatus_F_contig10098:1709..18151695995571.6346843-CDS-E-fasciculatus_F_contig10098:1709..1815Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10098 1710..1815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10098.105.1prot_E-fasciculatus_F_contig10098.105.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10098 529..1815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10098.105.1

>prot_E-fasciculatus_F_contig10098.105.1 ID=prot_E-fasciculatus_F_contig10098.105.1|Name=mRNA_E-fasciculatus_F_contig10098.105.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=267bp
MVLTRRRLTAVCVVGAMCASAPPRTQGFAPPAGSFGRAHGAGDSFYCAER
RLAAARLGESTSAASSPCRRDRRAATAVSRCCSMASGSRKAAARPGVAAR
SGAARAAASATRKRGRDRVPPPSSAAVAIKDRAATEVGVVDKQARSRAGG
GSHATAPGGGALANPPPQAKGFRRKNSGGKKKKTTGAGTAEPKAGVVGGV
APPSKDVSPSVPAVPGSAPSSSSSSSDANPLNDYFKTLKKIKLLKPDEEV
VLGRRIQRGKRVAEKL*
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mRNA from alignment at E-fasciculatus_F_contig10098:529..1815-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10098.105.1 ID=mRNA_E-fasciculatus_F_contig10098.105.1|Name=mRNA_E-fasciculatus_F_contig10098.105.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1287bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10098:529..1815- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTTCTCACGCGGCGAAGATTGACGGCCGTGTGTGTGGTTGGGGCAAT
GTGTGCCTCGGCACCGCCACGAACACAGGGCTTCGCTCCACCAGCGGGCA
GCTTCGGTGAGACAGCGGCGTTGCACGACGAGTGAGCTGGGGCCCAAGCC
AGGCCGGTGCTCTCGGGGTGGGGTCTGAGCACTTACCGTGTTGCCTTAGC
TTTTCGCTGATTGTCGTGGTGGCGAGGCAGGGTGAAAAACAGCAGTTTGA
AGCTGCTGTCCGGTTTTTGTGTCGAATTACGCAGCGATTTTGCCTTTATG
TGTACGAACATGATTCCGCCCCAAGCTCTGAGTCAAAACTCAGATGCCAA
CATGTTCAGGAATTTGTACAGTCTCGTCTACATAACAAACTGAAGTTATG
ACCCTCTCATGTTCCCTCTCCGTGCATGTGCCAAAGTTGAAGTGCCGTGA
GCAGCACGCTTGTGTGAAAATTCCTGCCATAATGAAAAGGGAACAGCGAC
GTGCACACACACCAAATATGTTGAACGTCCCCTTGCCTACTGCTGCCACG
CACCATCCGCCAACCCCACCTCATCCCCCCCCTCCCTCCCAGGGCGAGCG
CACGGAGCCGGAGACTCTTTCTACTGCGCCGAGCGCCGATTAGCGGCAGC
AAGGCTGGGCGAAAGCACGTCAGCGGCGTCATCACCCTGCCGGCGTGATC
GCCGAGCGGCAACAGCGGTTTCGCGCTGCTGTAGCATGGCGTCCGGCAGC
CGAAAAGCGGCGGCTAGGCCGGGCGTAGCGGCCAGGTCGGGAGCGGCGAG
AGCGGCGGCGTCGGCGACGCGAAAGCGGGGTCGAGATAGGGTTCCGCCTC
CGTCTAGTGCGGCGGTAGCTATTAAGGATAGGGCCGCCACGGAGGTGGGG
GTAGTAGACAAGCAAGCGCGGAGTAGGGCGGGAGGAGGCTCGCACGCAAC
AGCACCGGGCGGTGGGGCGTTGGCGAACCCGCCGCCGCAGGCCAAGGGCT
TCAGAAGAAAAAACAGCGGTGGCAAGAAAAAGAAGACCACCGGCGCCGGC
ACCGCCGAACCGAAGGCAGGAGTGGTGGGAGGAGTTGCACCACCTTCGAA
GGACGTTTCGCCTTCCGTCCCCGCCGTGCCTGGCTCCGCCCCTTCGTCGT
CGTCGTCGTCGTCTGACGCTAACCCCCTCAACGACTACTTCAAGACCCTC
AAGAAGATCAAGCTGCTCAAGCCAGACGAGGAAGTTGTCCTTGGACGACG
AATCCAGAGAGGTAAGCGTGTAGCGGAAAAACTCTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10098:529..1815-

>mRNA_E-fasciculatus_F_contig10098.105.1 ID=mRNA_E-fasciculatus_F_contig10098.105.1|Name=mRNA_E-fasciculatus_F_contig10098.105.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1602bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10098:529..1815- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTTCTCACGCGGCGAAGATTGACGGCCGTGTGTGTGGTTGGGGCAAT
GTGTGCCTCGGCACCGCCACGAACACAGGGCTTCGCTCCACCAGCGGGCA
GCTTCGATGGTTCTCACGCGGCGAAGATTGACGGCCGTGTGTGTGGTTGG
GGCAATGTGTGCCTCGGCACCGCCACGAACACAGGGCTTCGCTCCACCAG
CGGGCAGCTTCGGGCGAGCGCACGGAGCCGGAGACTCTTTCTACTGCGCC
GAGCGCCGATTAGCGGCAGCAAGGCTGGGCGAAAGCACGTCAGCGGCGTC
ATCACCCTGCCGGCGTGATCGCCGAGCGGCAACAGCGGTTTCGCGCTGCT
GTAGCATGGCGTCCGGCAGCCGAAAAGCGGCGGCTAGGCCGGGCGTAGCG
GCCAGGTCGGGAGCGGCGAGAGCGGCGGCGTCGGCGACGCGAAAGCGGGG
TCGAGATAGGGTTCCGCCTCCGTCTAGTGCGGCGGTAGCTATTAAGGATA
GGGCCGCCACGGAGGTGGGGGTAGTAGACAAGCAAGCGCGGAGTAGGGCG
GGAGGAGGCTCGCACGCAACAGCACCGGGCGGTGGGGCGTTGGCGAACCC
GCCGCCGCAGGCCAAGGGCTTCAGAAGAAAAAACAGCGGTGGCAAGAAAA
AGAAGACCACCGGCGCCGGCACCGCCGAACCGAAGGCAGGAGTGGTGGGA
GGAGTTGCACCACCTTCGAAGGACGTTTCGCCTTCCGTCCCCGCCGTGCC
TGGCTCCGCCCCTTCGTCGTCGTCGTCGTCGTCTGACGCTAACCCCCTCA
ACGACTACTTCAAGACCCTCAAGAAGATCAAGCTGCTCAAGCCAGACGAG
GAAGTTGTCCTTGGACGACGAATCCAGAGAGGTAAGCGTGTAGCGGAAAA
ACTCTAAGGCGAGCGCACGGAGCCGGAGACTCTTTCTACTGCGCCGAGCG
CCGATTAGCGGCAGCAAGGCTGGGCGAAAGCACGTCAGCGGCGTCATCAC
CCTGCCGGCGTGATCGCCGAGCGGCAACAGCGGTTTCGCGCTGCTGTAGC
ATGGCGTCCGGCAGCCGAAAAGCGGCGGCTAGGCCGGGCGTAGCGGCCAG
GTCGGGAGCGGCGAGAGCGGCGGCGTCGGCGACGCGAAAGCGGGGTCGAG
ATAGGGTTCCGCCTCCGTCTAGTGCGGCGGTAGCTATTAAGGATAGGGCC
GCCACGGAGGTGGGGGTAGTAGACAAGCAAGCGCGGAGTAGGGCGGGAGG
AGGCTCGCACGCAACAGCACCGGGCGGTGGGGCGTTGGCGAACCCGCCGC
CGCAGGCCAAGGGCTTCAGAAGAAAAAACAGCGGTGGCAAGAAAAAGAAG
ACCACCGGCGCCGGCACCGCCGAACCGAAGGCAGGAGTGGTGGGAGGAGT
TGCACCACCTTCGAAGGACGTTTCGCCTTCCGTCCCCGCCGTGCCTGGCT
CCGCCCCTTCGTCGTCGTCGTCGTCGTCTGACGCTAACCCCCTCAACGAC
TACTTCAAGACCCTCAAGAAGATCAAGCTGCTCAAGCCAGACGAGGAAGT
TGTCCTTGGACGACGAATCCAGAGAGGTAAGCGTGTAGCGGAAAAACTCT
AA
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