mRNA_E-fasciculatus_F_contig1009.95.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1009.95.1
Unique NamemRNA_E-fasciculatus_F_contig1009.95.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1009.95.1 vs. uniprot
Match: D7G731_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G731_ECTSI)

HSP 1 Score: 635 bits (1638), Expect = 1.230e-224
Identity = 377/409 (92.18%), Postives = 385/409 (94.13%), Query Frame = 1 
Query:    1 MDTDDVQHRAQDKDNEARRIKRQLEVAERRVKNSLYINEAHESLAAKANEREKEANARAAELGRRLDRALEKLESIERKDMILNLETSCARDEEQTFFAEQELRAHQMDPELYLPVNTAKRRQVARSEKRLHRLRLRHESQSAALSQAQATERLHADLRRAAGLGDIPQTMKCLDSGISVNVPDQSGLSAFLYACGQANADLVQILVDAGGDVLDGDGTITGLIIAARKGTSGXXXXXXXXXXXVCARDSAGGTALHAATLHRHVNVXXXXXXXXXXXXXXXXXXXXXXXMLASVSSGKNGGGDGKGGETGAEVAGLLLEWGASADIKNAKGLTPISAALDTRNRAMVLAYREFFGEDSGLAAVDADFDVESNRSDTTPATDNGRLPPERSKGATAVASPTRERNTFSA 1227
            MDTDD +HRA DKDNEARRIKRQLEVAERRVKNS YINEAHESLAAKA EREKEANARAAELGRRLDRALEKLESIERKDMILNLETSCARDEEQTFFAE+ELRAHQMDPELYLPVNTAKRRQVARSEKRL RLRLRHESQSAALSQAQATERLHADLRRAAGLGDIPQTMKCLDSGISVNVPDQSGLSAFLYACGQANA+LVQILVDAGGDVLDGDGTITGLIIAARKGT G           VCARDSAGGTALHAATLHRHV+ XXXXXXXXXXXXXXXXXXXXXXXMLASVSSGK+GG D +GGETGA+VAGLLLEWGASADIKN+KGLTPISAALDTRNRAMVLAYREFFGEDSGLAAVDADFDVESNRSDTTPATDNGRLPPE  K ATAVA PTRERNTFSA
Sbjct:  157 MDTDDGRHRALDKDNEARRIKRQLEVAERRVKNSFYINEAHESLAAKATEREKEANARAAELGRRLDRALEKLESIERKDMILNLETSCARDEEQTFFAERELRAHQMDPELYLPVNTAKRRQVARSEKRLRRLRLRHESQSAALSQAQATERLHADLRRAAGLGDIPQTMKCLDSGISVNVPDQSGLSAFLYACGQANAELVQILVDAGGDVLDGDGTITGLIIAARKGTMGVVQTLLEAGADVCARDSAGGTALHAATLHRHVDXXXXXXXXXXXXXXXXXXXXXXXXMLASVSSGKDGGSDVRGGETGADVAGLLLEWGASADIKNSKGLTPISAALDTRNRAMVLAYREFFGEDSGLAAVDADFDVESNRSDTTPATDNGRLPPESPKKATAVADPTRERNTFSA 565
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BLAST of mRNA_E-fasciculatus_F_contig1009.95.1 vs. uniprot
Match: A0A7R9VLG3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VLG3_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.790e-14
Identity = 64/191 (33.51%), Postives = 92/191 (48.17%), Query Frame = 1 
Query:  472 LRRAAGLGDIPQTMKCLDSGISVNVPDQSGLSAFLYACGQANADLVQILVDAGGDVLDGDGTITGLIIAARKGTSGXXXXXXXXXXXVCARDSAGGTALHAATLHRHVNVXXXXXXXXXXXXXXXXXXXXXXXMLASVSSGKNGGGDGKGGETGAEVAGLLLEWGASADIKNAKGLTPISAALDTRNRAMV 1044
            +R+A+  GD     + ++ G+SVNVPD++G SAF YACG  + D V+++V +  D+ D DG  T LI A R G +            V +RD  G TAL  A    +V+     XXXX                    +       DG+      E+A LLL+ GA A  KNA G+TP+  A   R++ +V
Sbjct:    1 MRQASSRGDTKCIKQLMEQGVSVNVPDKAGFSAFKYACGGGHLDAVRLMVQSA-DLNDADGRTTALIAATRNGHAPVVRFLLEEGADVESRDDGGNTALLIACAGGYVDCARALXXXXKKGGRRGGGADPNAANAVGNAGLHLCARDGR-----EEIASLLLDRGAEAGAKNASGMTPMEIAKARRHQGVV 185
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1009.95.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G731_ECTSI1.230e-22492.18Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A7R9VLG3_9STRA6.790e-1433.51Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1009contigE-fasciculatus_F_contig1009:17298..19020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score645.2
Seed ortholog evalue2.1e-182
Seed eggNOG ortholog2880.D7G731
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_011230.1
Exons2
Model size1230
Cds size1230
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927510.7376833-CDS-E-fasciculatus_F_contig1009:17297..179841622927510.7376833-CDS-E-fasciculatus_F_contig1009:17297..17984Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1009 17298..17984 +
1695995571.3195791-CDS-E-fasciculatus_F_contig1009:17297..179841695995571.3195791-CDS-E-fasciculatus_F_contig1009:17297..17984Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1009 17298..17984 +
1622927510.7520816-CDS-E-fasciculatus_F_contig1009:18477..190201622927510.7520816-CDS-E-fasciculatus_F_contig1009:18477..19020Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1009 18478..19020 +
1695995571.3301232-CDS-E-fasciculatus_F_contig1009:18477..190201695995571.3301232-CDS-E-fasciculatus_F_contig1009:18477..19020Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1009 18478..19020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1009.95.1prot_E-fasciculatus_F_contig1009.95.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1009 17298..19020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1009.95.1

>prot_E-fasciculatus_F_contig1009.95.1 ID=prot_E-fasciculatus_F_contig1009.95.1|Name=mRNA_E-fasciculatus_F_contig1009.95.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=410bp
MDTDDVQHRAQDKDNEARRIKRQLEVAERRVKNSLYINEAHESLAAKANE
REKEANARAAELGRRLDRALEKLESIERKDMILNLETSCARDEEQTFFAE
QELRAHQMDPELYLPVNTAKRRQVARSEKRLHRLRLRHESQSAALSQAQA
TERLHADLRRAAGLGDIPQTMKCLDSGISVNVPDQSGLSAFLYACGQANA
DLVQILVDAGGDVLDGDGTITGLIIAARKGTSGVVQTLLEAGADVCARDS
AGGTALHAATLHRHVNVVRVLLEAGSDWNAIDQGNNTPLHMLASVSSGKN
GGGDGKGGETGAEVAGLLLEWGASADIKNAKGLTPISAALDTRNRAMVLA
YREFFGEDSGLAAVDADFDVESNRSDTTPATDNGRLPPERSKGATAVASP
TRERNTFSA*
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mRNA from alignment at E-fasciculatus_F_contig1009:17298..19020+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1009.95.1 ID=mRNA_E-fasciculatus_F_contig1009.95.1|Name=mRNA_E-fasciculatus_F_contig1009.95.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1723bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1009:17298..19020+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATACCGACGACGTGCAACATCGTGCGCAAGACAAGGACAACGAAGC
TCGGCGGATCAAACGACAGCTGGAAGTTGCCGAGCGCAGGGTGAAAAACT
CGCTTTACATCAACGAGGCACACGAAAGCTTGGCAGCCAAGGCGAACGAA
AGAGAAAAGGAGGCTAATGCCCGCGCGGCCGAGCTCGGGCGCAGGCTGGA
CCGTGCGCTCGAAAAGCTGGAATCCATCGAGCGCAAGGACATGATACTAA
ACCTCGAAACATCCTGTGCGAGAGACGAGGAACAAACATTTTTCGCCGAA
CAAGAATTACGAGCCCACCAGATGGACCCCGAGCTATACCTGCCGGTCAA
CACTGCCAAGCGACGGCAGGTGGCTCGCTCGGAGAAGCGCCTCCATCGCT
TGCGGCTGCGCCACGAAAGTCAAAGTGCCGCCCTGTCCCAGGCACAAGCG
ACGGAGCGGTTACACGCAGACCTAAGGAGAGCGGCAGGTTTAGGAGACAT
ACCCCAGACGATGAAGTGCTTGGATTCAGGGATCTCAGTGAATGTGCCGG
ATCAGAGTGGACTCTCTGCTTTTCTGTACGCCTGCGGCCAGGCAAATGCT
GACTTGGTTCAAATTTTAGTAGATGCGGGGGGGGATGTCCTTGATGGCGA
TGGCACCATCACGGGGCTCATCATCGCGGCAAGGAAGGTGAGGGTCGGGC
GCAGAAACCTGAACGAAGACCCCATGGGTTCCGGCAACAATTTTTTGTAG
TTCAAAAGGAGTACATAGTTGGACTCCTGTCCTGCTAGAGAACCTGATAT
CGGTCAACAGTGCCGTTCAAGGTGAACAAAGCCTACACACAACGACGTGG
TTCATTTTCCAATATTTGTCGTGCCAAAACGCGGAAAATTGACTCTTGAT
GCCATTCTCGGGGAGGCGTGTGAGTCCTCTATCTACCGCCCGTTCTACTT
CAGGTGTTTGCAAACAGCAACAACAACAGCAGCACCACGTAGCGTAGTAG
ACTAAGTAGCCGTCGCGCCCAAGAACCCCCAAGAACACGTTCTTCCTGCC
ACAAGTTTGTCTGTGGATGGATGCTGCGCATTCTAGACATGAGAAACATA
CAGATTGTGGGCGGCACCACCACCAACGCTACTATTGCTACGACACCCCC
CCCCGCTTTTCCGTCCATCGAACGAAAAAGGGAACCTCGGGAGTGGTCCA
AACGCTACTGGAAGCCGGCGCAGACGTGTGCGCTCGCGATTCAGCAGGAG
GGACCGCCCTTCACGCAGCAACTCTCCATCGGCACGTGAACGTCGTCCGA
GTTTTGCTCGAAGCAGGATCGGACTGGAACGCTATCGACCAGGGCAACAA
CACCCCGCTGCACATGCTAGCGTCGGTATCTTCAGGCAAGAACGGAGGGG
GTGACGGTAAAGGAGGGGAAACGGGTGCCGAGGTCGCCGGTCTGCTCTTG
GAGTGGGGAGCCTCAGCAGACATTAAGAACGCAAAGGGCTTGACTCCGAT
ATCGGCTGCCCTCGACACGAGGAATCGGGCAATGGTACTCGCATACCGAG
AGTTTTTTGGCGAAGACAGCGGCCTTGCGGCTGTTGACGCTGATTTCGAT
GTTGAGAGCAATCGTAGCGATACTACTCCTGCCACGGATAACGGACGGTT
GCCGCCAGAAAGATCCAAGGGGGCCACTGCTGTCGCAAGTCCTACACGCG
AGCGAAACACATTCAGTGCCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1009:17298..19020+

>mRNA_E-fasciculatus_F_contig1009.95.1 ID=mRNA_E-fasciculatus_F_contig1009.95.1|Name=mRNA_E-fasciculatus_F_contig1009.95.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2460bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1009:17298..19020+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATACCGACGACGTGCAACATCGTGCGCAAGACAAGGACAACGAAGC
TCGGCGGATCAAACGACAGCTGGAAGTTGCCGAGCGCAGGGTGAAAAACT
CGCTTTACATCAACGAGGCACACGAAAGCTTGGCAGCCAAGGCGAACGAA
AGAGAAAAGGAGGCTAATGCCCGCGCGGCCGAGCTCGGGCGCAGGCTGGA
CCGTGCGCTCGAAAAGCTGGAATCCATCGAGCGCAAGGACATGATACTAA
ACCTCGAAACATCCTGTGCGAGAGACGAGGAACAAACATTTTTCGCCGAA
CAAGAATTACGAGCCCACCAGATGGACCCCGAGCTATACCTGCCGGTCAA
CACTGCCAAGCGACGGCAGGTGGCTCGCTCGGAGAAGCGCCTCCATCGCT
TGCGGCTGCGCCACGAAAGTCAAAGTGCCGCCCTGTCCCAGGCACAAGCG
ACGGAGCGGTTACACGCAGACCTAAGGAGAGCGGCAGGTTTAGGAGACAT
ACCCCAGACGATGAAGTGCTTGGATTCAGGGATCTCAGTGAATGTGCCGG
ATCAGAGTGGACTCTCTGCTTTTCTGTACGCCTGCGGCCAGGCAAATGCT
GACTTGGTTCAAATTTTAGTAGATGCGGGGGGGGATGTCCTTGATGGCGA
TGGCACCATCACGGGGCTCATCATCGCGGCAAGGAAGATGGATACCGACG
ACGTGCAACATCGTGCGCAAGACAAGGACAACGAAGCTCGGCGGATCAAA
CGACAGCTGGAAGTTGCCGAGCGCAGGGTGAAAAACTCGCTTTACATCAA
CGAGGCACACGAAAGCTTGGCAGCCAAGGCGAACGAAAGAGAAAAGGAGG
CTAATGCCCGCGCGGCCGAGCTCGGGCGCAGGCTGGACCGTGCGCTCGAA
AAGCTGGAATCCATCGAGCGCAAGGACATGATACTAAACCTCGAAACATC
CTGTGCGAGAGACGAGGAACAAACATTTTTCGCCGAACAAGAATTACGAG
CCCACCAGATGGACCCCGAGCTATACCTGCCGGTCAACACTGCCAAGCGA
CGGCAGGTGGCTCGCTCGGAGAAGCGCCTCCATCGCTTGCGGCTGCGCCA
CGAAAGTCAAAGTGCCGCCCTGTCCCAGGCACAAGCGACGGAGCGGTTAC
ACGCAGACCTAAGGAGAGCGGCAGGTTTAGGAGACATACCCCAGACGATG
AAGTGCTTGGATTCAGGGATCTCAGTGAATGTGCCGGATCAGAGTGGACT
CTCTGCTTTTCTGTACGCCTGCGGCCAGGCAAATGCTGACTTGGTTCAAA
TTTTAGTAGATGCGGGGGGGGATGTCCTTGATGGCGATGGCACCATCACG
GGGCTCATCATCGCGGCAAGGAAGGGAACCTCGGGAGTGGTCCAAACGCT
ACTGGAAGCCGGCGCAGACGTGTGCGCTCGCGATTCAGCAGGAGGGACCG
CCCTTCACGCAGCAACTCTCCATCGGCACGTGAACGTCGTCCGAGTTTTG
CTCGAAGCAGGATCGGACTGGAACGCTATCGACCAGGGCAACAACACCCC
GCTGCACATGCTAGCGTCGGTATCTTCAGGCAAGAACGGAGGGGGTGACG
GTAAAGGAGGGGAAACGGGTGCCGAGGTCGCCGGTCTGCTCTTGGAGTGG
GGAGCCTCAGCAGACATTAAGAACGCAAAGGGCTTGACTCCGATATCGGC
TGCCCTCGACACGAGGAATCGGGCAATGGTACTCGCATACCGAGAGTTTT
TTGGCGAAGACAGCGGCCTTGCGGCTGTTGACGCTGATTTCGATGTTGAG
AGCAATCGTAGCGATACTACTCCTGCCACGGATAACGGACGGTTGCCGCC
AGAAAGATCCAAGGGGGCCACTGCTGTCGCAAGTCCTACACGCGAGCGAA
ACACATTCAGTGCCTGAGGAACCTCGGGAGTGGTCCAAACGCTACTGGAA
GCCGGCGCAGACGTGTGCGCTCGCGATTCAGCAGGAGGGACCGCCCTTCA
CGCAGCAACTCTCCATCGGCACGTGAACGTCGTCCGAGTTTTGCTCGAAG
CAGGATCGGACTGGAACGCTATCGACCAGGGCAACAACACCCCGCTGCAC
ATGCTAGCGTCGGTATCTTCAGGCAAGAACGGAGGGGGTGACGGTAAAGG
AGGGGAAACGGGTGCCGAGGTCGCCGGTCTGCTCTTGGAGTGGGGAGCCT
CAGCAGACATTAAGAACGCAAAGGGCTTGACTCCGATATCGGCTGCCCTC
GACACGAGGAATCGGGCAATGGTACTCGCATACCGAGAGTTTTTTGGCGA
AGACAGCGGCCTTGCGGCTGTTGACGCTGATTTCGATGTTGAGAGCAATC
GTAGCGATACTACTCCTGCCACGGATAACGGACGGTTGCCGCCAGAAAGA
TCCAAGGGGGCCACTGCTGTCGCAAGTCCTACACGCGAGCGAAACACATT
CAGTGCCTGA
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